TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950089.2.3
(824 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA917721.1|CA917721 EST641868 GPOD Medicago truncatula c... 219 3e-060
gb|CX521899.1|CX521899 s13dNF1FE12VI099_469602 Virus-Infect... 219 3e-060
gb|DW017475.1|DW017475 EST1226436 MTY Medicago truncatula c... 218 4e-060
gb|CX523689.1|CX523689 s13dNF02G07AT054_322762 Aphid-Infect... 219 5e-060
gb|BI310113.1|BI310113 EST5311863 GESD Medicago truncatula ... 150 4e-053
gb|AW687624.2|AW687624 NF011F05RT1F1046 Developing root Med... 187 2e-048
gb|CX539846.1|CX539846 s13dNF0HH01GS012_462964 Germinating ... 192 8e-048
gb|AJ497137.1|AJ497137 AJ497137 MTFLOW Medicago truncatula ... 178 1e-043
gb|AL377777.1|AL377777 MtBB33H01F1 MtBB Medicago truncatula... 131 4e-034
gb|AJ846398.1|AJ846398 AJ846398 MtSCF Medicago truncatula c... 124 2e-027
gb|AW559437.1|AW559437 EST314485 DSIR Medicago truncatula c... 119 5e-026
gb|BF632934.1|BF632934 NF046E11DT1F1087 Drought Medicago tr... 119 5e-026
gb|BF635025.1|BF635025 NF078F08DT1F1074 Drought Medicago tr... 119 5e-026
gb|BG451908.1|BG451908 NF101D03DT1F1027 Drought Medicago tr... 119 5e-026
gb|BG454042.1|BG454042 NF105A01LF1F1001 Developing leaf Med... 119 5e-026
gb|BQ122641.1|BQ122641 EST608217 GLSD Medicago truncatula c... 119 5e-026
gb|BQ123507.1|BQ123507 EST609083 GLSD Medicago truncatula c... 119 5e-026
gb|BQ123589.1|BQ123589 EST609165 GLSD Medicago truncatula c... 119 5e-026
gb|BQ165245.1|BQ165245 EST611114 KVKC Medicago truncatula c... 119 5e-026
gb|CF068416.1|CF068416 EST669137 MTUS Medicago truncatula c... 119 5e-026
gb|CF068424.1|CF068424 EST669145 MTUS Medicago truncatula c... 119 5e-026
gb|CX541723.1|CX541723 s13dNF91F11GS095_466748 Germinating ... 119 5e-026
gb|AC146548.9| Medicago truncatula clone mth2-2p3, complete... 86 3e-025
gb|AC146329.18| Medicago truncatula clone mth2-5i21, comple... 86 3e-025
>gb|CA917721.1|CA917721 EST641868 GPOD Medicago truncatula cDNA clone GPOD-37E21, mRNA
sequence
Length = 701
Score = 219 bits (472), Expect(2) = 3e-060
Identities = 85/129 (65%), Positives = 98/129 (75%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRAIE+K+PVDDQQWLTYWV S IT
Sbjct: 80 GSGSGAGSFLMVLLRNFDVLAGPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLIT 259
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXR 223
LFELTFA I+EW+P W YAKL C LVLP+F G AYVY+H+ RP N Q +NIWY+ R
Sbjct: 260 LFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANPQTINIWYVPR 439
Query: 222 NEKLGKSDD 196
+ + D
Sbjct: 440 KKDVFTKQD 466
Score = 124 bits (266), Expect = 2e-027
Identities = 66/129 (51%), Positives = 81/129 (62%)
Frame = +2 / -3
Query: 173 YLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAY 352
+ +A +S + + FL Y M + G S*T*A P+ G+T Q++ SFAY
Sbjct: 489 FSAAVIMSSCFVKTSFFLGTYQMLMV*GLAKKGLT*CS*T*AAPVK*GRTNQQVRISFAY 310
Query: 353 DQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTS 532
G HS I AKVSS +VINE TQ*VSHC*SSTG +SIALTEAYRG* ++GPA TS
Sbjct: 309 GHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDLLSIALTEAYRG*TRLITGPASTS 130
Query: 533 KLLASTLRK 559
K L T+RK
Sbjct: 129 KFLRRTIRK 103
Score = 35.0 bits (70), Expect(2) = 3e-060
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3 / +2
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISKS 124
K DD+ AAE+YI++N AF LI ++
Sbjct: 458 KQDDIITAAEKYIKENGTEAFENLIHRA 541
>gb|CX521899.1|CX521899 s13dNF1FE12VI099_469602 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 614
Score = 219 bits (472), Expect(2) = 3e-060
Identities = 85/129 (65%), Positives = 98/129 (75%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRAIE+K+PVDDQQWLTYWV S IT
Sbjct: 113 GSGSGAGSFLMVLLRNFDVLAGPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLIT 292
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXR 223
LFELTFA I+EW+P W YAKL C LVLP+F G AYVY+H+ RP N Q +NIWY+ R
Sbjct: 293 LFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANPQTINIWYVPR 472
Query: 222 NEKLGKSDD 196
+ + D
Sbjct: 473 KKDVFTKQD 499
Score = 124 bits (266), Expect = 2e-027
Identities = 66/129 (51%), Positives = 81/129 (62%)
Frame = +2 / -3
Query: 173 YLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAY 352
+ +A +S + + FL Y M + G S*T*A P+ G+T Q++ SFAY
Sbjct: 522 FSAAVIMSSCFVKTSFFLGTYQMLMV*GLAKKGLT*CS*T*AAPVK*GRTNQQVRISFAY 343
Query: 353 DQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTS 532
G HS I AKVSS +VINE TQ*VSHC*SSTG +SIALTEAYRG* ++GPA TS
Sbjct: 342 GHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDLLSIALTEAYRG*TRLITGPASTS 163
Query: 533 KLLASTLRK 559
K L T+RK
Sbjct: 162 KFLRRTIRK 136
Score = 35.0 bits (70), Expect(2) = 3e-060
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3 / +2
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISKS 124
K DD+ AAE+YI++N AF LI ++
Sbjct: 491 KQDDIITAAEKYIKENGTEAFENLIHRA 574
>gb|DW017475.1|DW017475 EST1226436 MTY Medicago truncatula cDNA clone MTYAU11, mRNA
sequence
Length = 795
Score = 218 bits (471), Expect(2) = 4e-060
Identities = 84/129 (65%), Positives = 98/129 (75%)
Frame = -3 / +1
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRA+E+K+PVDDQQWLTYWV S IT
Sbjct: 124 GSGSGAGSFLMVLLKNFDVLAGPVISLVYPLYASVRAVESKSPVDDQQWLTYWVLYSLIT 303
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXR 223
LFELTFA I+EW+P W YAKL C LVLP+F G AYVY+H+ RP N Q +NIWY+ R
Sbjct: 304 LFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANPQTINIWYVPR 483
Query: 222 NEKLGKSDD 196
+ + D
Sbjct: 484 KKDVFTKQD 510
Score = 122 bits (261), Expect = 7e-027
Identities = 65/129 (50%), Positives = 80/129 (62%)
Frame = +2 / -2
Query: 173 YLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAY 352
+ +A +S + + FL Y M + G S*T*A P+ G+T Q++ SFAY
Sbjct: 533 FSAAVIMSSCFVKTSFFLGTYQMLMV*GLAKKGLT*CS*T*AAPVK*GRTNQQVRISFAY 354
Query: 353 DQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTS 532
G HS I AKVSS +VINE TQ*VSHC*SSTG +S ALTEAYRG* ++GPA TS
Sbjct: 353 GHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDLLSTALTEAYRG*TRLITGPASTS 174
Query: 533 KLLASTLRK 559
K L T+RK
Sbjct: 173 KFLRRTIRK 147
Score = 35.0 bits (70), Expect(2) = 4e-060
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3 / +1
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISKS 124
K DD+ AAE+YI++N AF LI ++
Sbjct: 502 KQDDIITAAEKYIKENGTEAFENLIHRA 585
>gb|CX523689.1|CX523689 s13dNF02G07AT054_322762 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 692
Score = 219 bits (472), Expect(2) = 5e-060
Identities = 85/129 (65%), Positives = 98/129 (75%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRAIE+K+PVDDQQWLTYWV S IT
Sbjct: 188 GSGSGAGSFLMVLLRNFDVLAGPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLIT 367
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXR 223
LFELTFA I+EW+P W YAKL C LVLP+F G AYVY+H+ RP N Q +NIWY+ R
Sbjct: 368 LFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANPQTINIWYVPR 547
Query: 222 NEKLGKSDD 196
+ + D
Sbjct: 548 KKDVFTKQD 574
Score = 124 bits (266), Expect = 2e-027
Identities = 66/129 (51%), Positives = 81/129 (62%)
Frame = +2 / -3
Query: 173 YLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAY 352
+ +A +S + + FL Y M + G S*T*A P+ G+T Q++ SFAY
Sbjct: 597 FSAAVIMSSCFVKTSFFLGTYQMLMV*GLAKKGLT*CS*T*AAPVK*GRTNQQVRISFAY 418
Query: 353 DQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSIALTEAYRG*ASDMSGPARTS 532
G HS I AKVSS +VINE TQ*VSHC*SSTG +SIALTEAYRG* ++GPA TS
Sbjct: 417 GHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDLLSIALTEAYRG*TRLITGPASTS 238
Query: 533 KLLASTLRK 559
K L T+RK
Sbjct: 237 KFLRRTIRK 211
Score = 34.1 bits (68), Expect(2) = 5e-060
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3 / +2
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLI 133
K DD+ AAE+YI++N AF LI
Sbjct: 566 KQDDIITAAEKYIKENGTEAFENLI 640
>gb|BI310113.1|BI310113 EST5311863 GESD Medicago truncatula cDNA clone pGESD7K13 5' end,
mRNA sequence
Length = 528
Score = 150 bits (323), Expect(3) = 4e-053
Identities = 54/92 (58%), Positives = 66/92 (71%)
Frame = -3 / +1
Query: 471 IETKNPVDDQQWLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAY 292
+ +K+PVDDQQWLTYWV S ITLFELTFA I+EW+P W YAKL C LVLP+F G AY
Sbjct: 94 LRSKSPVDDQQWLTYWVLYSLITLFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAY 273
Query: 291 VYDHFXRPMFVNRQIVNIWYIXRNEKLGKSDD 196
VY+H+ RP N Q +NIWY+ R + + D
Sbjct: 274 VYEHYVRPFLANPQTINIWYVPRKKDVFTKQD 369
Score = 82.2 bits (173), Expect(2) = 8e-023
Identities = 45/95 (47%), Positives = 56/95 (58%)
Frame = +2 / -2
Query: 173 YLSAAXXTSSDLPSFSFLXIYHMXTIWRFTNIGRXKWS*T*AXPLNQGKTXXQLKNSFAY 352
+ +A +S + + FL Y M + G S*T*A P+ G+T Q++ SFAY
Sbjct: 392 FSAAVIMSSCFVKTSFFLGTYQMLMV*GLAKKGLT*CS*T*AAPVK*GRTNQQVRISFAY 213
Query: 353 DQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTG 457
G HS I AKVSS +VINE TQ*VSHC*SSTG
Sbjct: 212 GHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTG 108
Score = 62.9 bits (131), Expect(3) = 4e-053
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = -3 / +3
Query: 561 SFLKVLANNFDVLAGPLISLAYPLYASVRAIE 466
SFL VL NFDVLAGP+ISL YPLYASVRAIE
Sbjct: 3 SFLMVLLRNFDVLAGPVISLVYPLYASVRAIE 98
Score = 46.4 bits (95), Expect(2) = 8e-023
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +2 / -3
Query: 467 SIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
SIALTEAYRG* ++GPA TSK L T+RK
Sbjct: 97 SIALTEAYRG*TRLITGPASTSKFLRRTIRK 5
Score = 35.0 bits (70), Expect(3) = 4e-053
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3 / +1
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISKS 124
K DD+ AAE+YI++N AF LI ++
Sbjct: 361 KQDDIITAAEKYIKENGTEAFENLIHRA 444
>gb|AW687624.2|AW687624 NF011F05RT1F1046 Developing root Medicago truncatula cDNA clone
NF011F05RT 5', mRNA sequence
Length = 476
Score = 187 bits (402), Expect(2) = 2e-048
Identities = 74/100 (74%), Positives = 82/100 (82%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRAIE+K+PVDDQQWLTYWV S IT
Sbjct: 104 GSGSGAGSFLMVLLRNFDVLAGPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLIT 283
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYD 283
LFELTFA I+EW+P W YAKL C LVLP+F G AYVY+
Sbjct: 284 LFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYE 403
Score = 119 bits (254), Expect = 7e-026
Identities = 59/92 (64%), Positives = 68/92 (73%)
Frame = +2 / -3
Query: 284 S*T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFF 463
S*T*A P+ G+T Q++ SFAY G HS I AKVSS +VINE TQ*VSHC*SSTG
Sbjct: 402 S*T*AAPVK*GRTNQQVRISFAYGHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDL 223
Query: 464 VSIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
+SIALTEAYRG* ++GPA TSK L T+RK
Sbjct: 222 LSIALTEAYRG*TRLITGPASTSKFLRRTIRK 127
Score = 27.2 bits (53), Expect(2) = 2e-048
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3 / +2
Query: 270 PMFVNRQIVNIWYIXRNE 217
P N Q +NIWY+ R +
Sbjct: 419 PFLANPQTINIWYVPRKK 472
>gb|CX539846.1|CX539846 s13dNF0HH01GS012_462964 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 392
Score = 192 bits (413), Expect = 8e-048
Identities = 75/102 (73%), Positives = 84/102 (82%)
Frame = -3 / +3
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRAIE+K+PVDDQQWLTYWV S IT
Sbjct: 84 GSGSGAGSFLMVLLRNFDVLAGPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLIT 263
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHF 277
LFELTFA I+EW+P W YAKL C LVLP+F G AYVY+H+
Sbjct: 264 LFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYEHY 389
Score = 119 bits (254), Expect = 7e-026
Identities = 59/92 (64%), Positives = 68/92 (73%)
Frame = +2 / -2
Query: 284 S*T*AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFF 463
S*T*A P+ G+T Q++ SFAY G HS I AKVSS +VINE TQ*VSHC*SSTG
Sbjct: 382 S*T*AAPVK*GRTNQQVRISFAYGHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDL 203
Query: 464 VSIALTEAYRG*ASDMSGPARTSKLLASTLRK 559
+SIALTEAYRG* ++GPA TSK L T+RK
Sbjct: 202 LSIALTEAYRG*TRLITGPASTSKFLRRTIRK 107
>gb|AJ497137.1|AJ497137 AJ497137 MTFLOW Medicago truncatula cDNA clone mt--abc955105a12,
mRNA sequence
Length = 377
Score = 178 bits (383), Expect = 1e-043
Identities = 71/97 (73%), Positives = 78/97 (80%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFIT 403
GS G+GSFL VL NFDVLAGP+ISL YPLYASVRAIE+K+PVDDQQWLTYWV S IT
Sbjct: 86 GSGSGAGSFLMVLLRNFDVLAGPVISLVYPLYASVRAIESKSPVDDQQWLTYWVLYSLIT 265
Query: 402 LFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAY 292
LFELTFA I+EW+P W YAKL C LVLP+ G AY
Sbjct: 266 LFELTFAKILEWIPIWPYAKLILTCWLVLPYLTGAAY 376
Score = 114 bits (244), Expect = 2e-024
Identities = 56/89 (62%), Positives = 65/89 (73%)
Frame = +2 / -3
Query: 293 *AXPLNQGKTXXQLKNSFAYDQNGSHSIIGAKVSSNKVINEXXTQ*VSHC*SSTGFFVSI 472
*A P+ G+T Q++ SFAY G HS I AKVSS +VINE TQ*VSHC*SSTG +SI
Sbjct: 375 *AAPVR*GRTNQQVRISFAYGHIGIHSRILAKVSSKRVINEYRTQ*VSHC*SSTGDLLSI 196
Query: 473 ALTEAYRG*ASDMSGPARTSKLLASTLRK 559
ALTEAYRG* ++GPA TSK L T+RK
Sbjct: 195 ALTEAYRG*TRLITGPASTSKFLRRTIRK 109
>gb|AL377777.1|AL377777 MtBB33H01F1 MtBB Medicago truncatula cDNA clone MtBB33H01 T3, mRNA
sequence
Length = 475
Score = 131 bits (281), Expect(2) = 4e-034
Identities = 47/81 (58%), Positives = 56/81 (69%)
Frame = -3 / +3
Query: 438 WLTYWVXXSFITLFELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFV 259
WLTYWV S ITLFELTFA I+EW+P W YAKL C LVLP+F G AYVY+H+ RP
Sbjct: 3 WLTYWVLYSLITLFELTFAKILEWIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLA 182
Query: 258 NRQIVNIWYIXRNEKLGKSDD 196
N Q +NIWY+ R + + D
Sbjct: 183 NPQTINIWYVPRKKDVFTKQD 245
Score = 35.0 bits (70), Expect(2) = 4e-034
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3 / +3
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISKS 124
K DD+ AAE+YI++N AF LI ++
Sbjct: 237 KQDDIITAAEKYIKENGTEAFENLIHRA 320
>gb|AJ846398.1|AJ846398 AJ846398 MtSCF Medicago truncatula cDNA clone MtCF02F21S6, mRNA
sequence
Length = 778
Score = 124 bits (265), Expect = 2e-027
Identities = 48/98 (48%), Positives = 65/98 (66%)
Frame = -3 / -3
Query: 561 SFLKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFA 382
S L + + +AGP++ L YPLYASV AIE+ + VDD+QWL YW+ SF+TL E+ A
Sbjct: 647 SKLWIFITQLNSIAGPVLMLLYPLYASVVAIESTSKVDDEQWLAYWIIYSFLTLVEIVLA 468
Query: 381 PIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRP 268
++EW+P W AKLF LVLP G A++Y+ F RP
Sbjct: 467 SLLEWIPIWYNAKLFLVAWLVLPQSKGAAFLYEKFVRP 354
>gb|AW559437.1|AW559437 EST314485 DSIR Medicago truncatula cDNA clone pDSIR-19G21, mRNA
sequence
Length = 781
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +2
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 167 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 346
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 347 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 451
>gb|BF632934.1|BF632934 NF046E11DT1F1087 Drought Medicago truncatula cDNA clone NF046E11DT
5', mRNA sequence
Length = 548
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +2
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 164 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 343
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 344 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 448
>gb|BF635025.1|BF635025 NF078F08DT1F1074 Drought Medicago truncatula cDNA clone NF078F08DT
5', mRNA sequence
Length = 683
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +3
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 132 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 311
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 312 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 416
>gb|BG451908.1|BG451908 NF101D03DT1F1027 Drought Medicago truncatula cDNA clone NF101D03DT
5', mRNA sequence
Length = 656
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +1
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 166 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 345
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 346 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 450
>gb|BG454042.1|BG454042 NF105A01LF1F1001 Developing leaf Medicago truncatula cDNA clone
NF105A01LF 5', mRNA sequence
Length = 663
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +2
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 170 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 349
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 350 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 454
>gb|BQ122641.1|BQ122641 EST608217 GLSD Medicago truncatula cDNA clone pGLSD-29J9, mRNA
sequence
Length = 543
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +1
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 109 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 288
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 289 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 393
>gb|BQ123507.1|BQ123507 EST609083 GLSD Medicago truncatula cDNA clone pGLSD-32D11, mRNA
sequence
Length = 469
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +1
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 112 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 291
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 292 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 396
>gb|BQ123589.1|BQ123589 EST609165 GLSD Medicago truncatula cDNA clone pGLSD-32D12, mRNA
sequence
Length = 426
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +3
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 108 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 287
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 288 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 392
>gb|BQ165245.1|BQ165245 EST611114 KVKC Medicago truncatula cDNA clone pKVKC-7C3, mRNA
sequence
Length = 847
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +3
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 165 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 344
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 345 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 449
>gb|CF068416.1|CF068416 EST669137 MTUS Medicago truncatula cDNA clone MTUS-7F9, mRNA
sequence
Length = 476
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +2
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 116 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 295
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 296 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 400
>gb|CF068424.1|CF068424 EST669145 MTUS Medicago truncatula cDNA clone MTUS-7G8, mRNA
sequence
Length = 771
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +1
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 121 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 300
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 301 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 405
>gb|CX541723.1|CX541723 s13dNF91F11GS095_466748 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 590
Score = 119 bits (255), Expect = 5e-026
Identities = 47/95 (49%), Positives = 61/95 (64%)
Frame = -3 / +3
Query: 555 LKVLANNFDVLAGPLISLAYPLYASVRAIETKNPVDDQQWLTYWVXXSFITLFELTFAPI 376
L L LAGP+++L YPLYASV AIE+ + +DD+QWL YW+ SF+TL E+ P
Sbjct: 126 LWTLITQLHSLAGPVVTLLYPLYASVVAIESPSKLDDEQWLAYWIIYSFLTLGEMLMQPA 305
Query: 375 IEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXR 271
+EW+P W KL LVLP F G AY+Y+ F R
Sbjct: 306 LEWIPIWYDVKLLVAAWLVLPQFMGAAYLYERFVR 410
>gb|AC146548.9| Medicago truncatula clone mth2-2p3, complete sequence
Length = 129327
Score = 85.8 bits (181), Expect(4) = 3e-025
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = -3 / +3
Query: 399 FELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXRN 220
F L F I +P W YAKL C LVLP+F G AYVY+H+ RP N Q +NIWY+ R
Sbjct: 35160 FRLNFHNIYCRIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANPQTINIWYVPRK 35339
Query: 219 EKLGKSDD 196
+ + D
Sbjct: 35340 KDVFTKQD 35363
Score = 39.6 bits (80), Expect(4) = 3e-025
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2 / +3
Query: 508 ITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLIYHFV*ANFCSN 377
+ C+ ICF * ++ SC *S VA+LLG I H FC N
Sbjct: 34452 LICVLQICFS*GN*EQVSCG*STVANLLGSVFIDHSFRTYFCQN 34583
Score = 37.7 bits (76), Expect(4) = 3e-025
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAG 517
GS G+GSFL VL NFDVLAG
Sbjct: 34157 GSGSGAGSFLMVLLRNFDVLAG 34222
Score = 34.5 bits (69), Expect(4) = 3e-025
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3 / +3
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISK 127
K DD+ AAE+YI++N AF LI +
Sbjct: 35355 KQDDIITAAEKYIKENGTEAFENLIHR 35435
>gb|AC146329.18| Medicago truncatula clone mth2-5i21, complete sequence
Length = 129327
Score = 85.8 bits (181), Expect(4) = 3e-025
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = -3 / +3
Query: 399 FELTFAPIIEWLPFWSYAKLFFNCXLVLPWFNGXAYVYDHFXRPMFVNRQIVNIWYIXRN 220
F L F I +P W YAKL C LVLP+F G AYVY+H+ RP N Q +NIWY+ R
Sbjct: 35160 FRLNFHNIYCRIPIWPYAKLILTCWLVLPYFTGAAYVYEHYVRPFLANPQTINIWYVPRK 35339
Query: 219 EKLGKSDD 196
+ + D
Sbjct: 35340 KDVFTKQD 35363
Score = 39.6 bits (80), Expect(4) = 3e-025
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -2 / +3
Query: 508 ITCLSSICFC*SYRDKKSCR*SAVAHLLGVXLIYHFV*ANFCSN 377
+ C+ ICF * ++ SC *S VA+LLG I H FC N
Sbjct: 34452 LICVLQICFS*GN*EQVSCG*STVANLLGSVFIDHSFRTYFCQN 34583
Score = 37.7 bits (76), Expect(4) = 3e-025
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = -3 / +2
Query: 582 GSKMGSGSFLKVLANNFDVLAG 517
GS G+GSFL VL NFDVLAG
Sbjct: 34157 GSGSGAGSFLMVLLRNFDVLAG 34222
Score = 34.5 bits (69), Expect(4) = 3e-025
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3 / +3
Query: 207 KSDDVXXAAERYIEQNXXXAFXXLISK 127
K DD+ AAE+YI++N AF LI +
Sbjct: 35355 KQDDIITAAEKYIKENGTEAFENLIHR 35435
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 591,081,431
Number of Sequences: 392609
Number of extensions: 7398994
Number of successful extensions: 56389
Number of sequences better than 1.0e-020: 28
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 27729557900
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)