TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ499956.1|AJ499956 AJ499956 MTGIM Medicago truncatula c... 110 2e-023
gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone m... 83 1e-022
gb|CG951809.1|CG951809 MBEMH35TR mth2 Medicago truncatula g... 93 7e-022
gb|CG945883.1|CG945883 MBECB51TR mth2 Medicago truncatula g... 93 7e-022
gb|BG648501.1|BG648501 EST510120 HOGA Medicago truncatula c... 105 7e-022
gb|CA921732.1|CA921732 EST639450 MTUS Medicago truncatula c... 105 7e-022
>gb|AJ499956.1|AJ499956 AJ499956 MTGIM Medicago truncatula cDNA clone mtgmacc120010g01,
mRNA sequence
Length = 564
Score = 110 bits (235), Expect = 2e-023
Identities = 44/80 (55%), Positives = 57/80 (71%)
Frame = +3 / -2
Query: 75 TFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGE 254
T+ F+D DI K++LRSLID SVVESFG GK CI SRVYP++A+ A +Y FNNG
Sbjct: 365 TYGTFIDVDILHEKLSLRSLIDHSVVESFGGEGKACITSRVYPTLAINDKALIYAFNNGT 186
Query: 255 VDVTVSGLTAWEMKKPLMNG 314
+V ++ L+AW MKK +NG
Sbjct: 185 TNVKITRLSAWSMKKAQLNG 126
>gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2o12, complete sequence
Length = 89504
Score = 82.6 bits (174), Expect(2) = 1e-022
Identities = 35/54 (64%), Positives = 39/54 (72%)
Frame = +3 / +2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMK 296
ID SVVESFG GGKT ILSRVYP +AV A+L+VFNNG + V L AW MK
Sbjct: 80201 IDHSVVESFGEGGKTNILSRVYPVLAVANQANLFVFNNGTEPIIVENLKAWSMK 80362
Score = 44.6 bits (91), Expect(2) = 1e-022
Identities = 16/26 (61%), Positives = 23/26 (88%)
Frame = +3 / +1
Query: 60 DLYKPTFAGFVDADISSGKITLRSLI 137
+LYKP+FAGFVD D ++ K++LRSL+
Sbjct: 80032 NLYKPSFAGFVDVDFATKKLSLRSLV 80109
>gb|CG951809.1|CG951809 MBEMH35TR mth2 Medicago truncatula genomic clone 1F22, DNA sequence
Length = 898
Score = 92.7 bits (196), Expect(2) = 7e-022
Identities = 39/59 (66%), Positives = 44/59 (74%)
Frame = +3 / +1
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMN 311
ID SVVESFGAGGKT ILSRVYP++AV + AHL+VFNNG +TV L AW MK N
Sbjct: 346 IDHSVVESFGAGGKTNILSRVYPTVAVNEKAHLFVFNNGTEQITVEKLKAWSMKTASRN 522
Score = 34.5 bits (69), Expect(2) = 7e-022
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / +3
Query: 60 DLYKPTFAGFVDADISSGK 116
+LYKP+F GFVD D+++ K
Sbjct: 144 ELYKPSFGGFVDVDLANNK 200
>gb|CG945883.1|CG945883 MBECB51TR mth2 Medicago truncatula genomic clone 24I6, DNA sequence
Length = 913
Score = 92.7 bits (196), Expect(2) = 7e-022
Identities = 39/59 (66%), Positives = 44/59 (74%)
Frame = +3 / +2
Query: 135 IDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYVFNNGEVDVTVSGLTAWEMKKPLMN 311
ID SVVESFGAGGKT ILSRVYP++AV + AHL+VFNNG +TV L AW MK N
Sbjct: 509 IDHSVVESFGAGGKTNILSRVYPTVAVNEKAHLFVFNNGTEQITVEKLKAWSMKTASRN 685
Score = 34.5 bits (69), Expect(2) = 7e-022
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = +3 / +1
Query: 60 DLYKPTFAGFVDADISSGK 116
+LYKP+F GFVD D+++ K
Sbjct: 307 ELYKPSFGGFVDVDLANNK 363
>gb|BG648501.1|BG648501 EST510120 HOGA Medicago truncatula cDNA clone pHOGA-19P18 5' end,
mRNA sequence
Length = 451
Score = 105 bits (224), Expect = 7e-022
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +3 / +3
Query: 60 DLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYV 239
D+ K ++A D D + I+LRSLIDRS++ESFG GG+ CI SR YP A KDAHL+V
Sbjct: 87 DVEKTSYATIFDIDPNLKTISLRSLIDRSIIESFGDGGRACITSRAYPLFATDKDAHLFV 266
Query: 240 FNNGEVDVTVSGLTAWEMKK 299
FN+G V +S L AW MK+
Sbjct: 267 FNDGSQSVVISQLNAWSMKQ 326
>gb|CA921732.1|CA921732 EST639450 MTUS Medicago truncatula cDNA clone MTUS-43G7, mRNA
sequence
Length = 767
Score = 105 bits (224), Expect = 7e-022
Identities = 43/80 (53%), Positives = 55/80 (68%)
Frame = +3 / -3
Query: 60 DLYKPTFAGFVDADISSGKITLRSLIDRSVVESFGAGGKTCILSRVYPSIAVGKDAHLYV 239
D+ K ++A D D + I+LRSLIDRS++ESFG GG+ CI SR YP A KDAHL+V
Sbjct: 420 DVEKTSYATIFDIDPNLKTISLRSLIDRSIIESFGDGGRACITSRAYPLFATDKDAHLFV 241
Query: 240 FNNGEVDVTVSGLTAWEMKK 299
FN+G V +S L AW MK+
Sbjct: 240 FNDGSQSVVISQLNAWSMKQ 181
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 543,072,414
Number of Sequences: 392609
Number of extensions: 6735737
Number of successful extensions: 44319
Number of sequences better than 1.0e-020: 6
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20797168425
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)