TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750929.2.1
(583 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF641397.1|BF641397 NF061H12IN1F1103 Insect herbivory Me... 120 2e-026
gb|BG453405.1|BG453405 NF090G10LF1F1081 Developing leaf Med... 120 2e-026
gb|CX528236.1|CX528236 s13dNF53C02AT018_516984 Aphid-Infect... 117 2e-025
gb|BE202678.1|BE202678 EST402700 KV1 Medicago truncatula cD... 115 6e-025
gb|AW694777.2|AW694777 NF080A08ST1F1056 Developing stem Med... 98 1e-023
gb|BF003686.1|BF003686 EST432184 KV1 Medicago truncatula cD... 105 6e-022
gb|BF637128.1|BF637128 NF072E07LF1F1052 Developing leaf Med... 105 6e-022
gb|BF651193.1|BF651193 NF102H07EC1F1062 Elicited cell cultu... 105 6e-022
gb|AW685481.1|AW685481 NF030D05NR1F1000 Nodulated root Medi... 105 8e-022
gb|AW686035.1|AW686035 NF032G08NR1F1000 Nodulated root Medi... 105 8e-022
gb|AW736264.1|AW736264 EST332326 KV3 Medicago truncatula cD... 105 8e-022
gb|AW774787.1|AW774787 EST333938 KV3 Medicago truncatula cD... 105 8e-022
gb|BG645083.1|BG645083 EST506702 KV3 Medicago truncatula cD... 105 8e-022
gb|CX530825.1|CX530825 s13dNF33F09MJ076_247665 Methyl Jasmo... 105 8e-022
emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4... 69 7e-021
gb|BF003246.1|BF003246 EST431674 KV1 Medicago truncatula cD... 64 7e-021
gb|BQ148034.1|BQ148034 NF058A08FL1F1065 Developing flower M... 62 1e-020
>gb|BF641397.1|BF641397 NF061H12IN1F1103 Insect herbivory Medicago truncatula cDNA clone
NF061H12IN 5', mRNA sequence
Length = 664
Score = 120 bits (256), Expect = 2e-026
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +1 / +1
Query: 418 VLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
VLSTDAKPRLKWTPELH+RF++A++QLGG DKATPK+IMR+M IPGLTLYHLKSH
Sbjct: 310 VLSTDAKPRLKWTPELHQRFIDAINQLGGADKATPKSIMRVMEIPGLTLYHLKSH 474
>gb|BG453405.1|BG453405 NF090G10LF1F1081 Developing leaf Medicago truncatula cDNA clone
NF090G10LF 5', mRNA sequence
Length = 667
Score = 120 bits (256), Expect = 2e-026
Identities = 46/55 (83%), Positives = 53/55 (96%)
Frame = +1 / +3
Query: 418 VLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
VLSTDAKPRLKWTPELH+RF++A++QLGG DKATPK+IMR+M IPGLTLYHLKSH
Sbjct: 144 VLSTDAKPRLKWTPELHQRFIDAINQLGGADKATPKSIMRVMEIPGLTLYHLKSH 308
>gb|CX528236.1|CX528236 s13dNF53C02AT018_516984 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 550
Score = 117 bits (250), Expect = 2e-025
Identities = 45/56 (80%), Positives = 53/56 (94%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVLSTDAKPRLKWT ELH+RF +A++QLGG +KATPK++MR+MGIPGLTLYHLKSH
Sbjct: 332 LVLSTDAKPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSH 499
>gb|BE202678.1|BE202678 EST402700 KV1 Medicago truncatula cDNA clone pKV1-2F8, mRNA
sequence
Length = 578
Score = 115 bits (246), Expect = 6e-025
Identities = 44/55 (80%), Positives = 52/55 (94%)
Frame = +1 / +2
Query: 418 VLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
VLSTDAKPRLKWT ELH+RF +A++QLGG +KATPK++MR+MGIPGLTLYHLKSH
Sbjct: 5 VLSTDAKPRLKWTHELHQRFTDAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSH 169
>gb|AW694777.2|AW694777 NF080A08ST1F1056 Developing stem Medicago truncatula cDNA clone
NF080A08ST 5', mRNA sequence
Length = 513
Score = 97.7 bits (207), Expect(2) = 1e-023
Identities = 38/58 (65%), Positives = 45/58 (77%)
Frame = +1 / +1
Query: 373 LHXXXXXXXXXXXXLVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMG 546
+H LVLSTDAKPRLKWTP+LHERF+EAV+QLGG DKATPKT+++LMG
Sbjct: 274 MHMQGGGNGSSDSGLVLSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTVLKLMG 447
Score = 33.1 bits (66), Expect(2) = 1e-023
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1 / +3
Query: 547 IPGLTLYHLKSH 582
IPGLTLYHLKSH
Sbjct: 450 IPGLTLYHLKSH 485
>gb|BF003686.1|BF003686 EST432184 KV1 Medicago truncatula cDNA clone pKV1-13K10, mRNA
sequence
Length = 529
Score = 105 bits (224), Expect = 6e-022
Identities = 41/56 (73%), Positives = 48/56 (85%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL++D KPRL+WT +LH+RFV+AV QLGGP KATPK IMR M + GLTLYHLKSH
Sbjct: 195 LVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSH 362
>gb|BF637128.1|BF637128 NF072E07LF1F1052 Developing leaf Medicago truncatula cDNA clone
NF072E07LF 5', mRNA sequence
Length = 515
Score = 105 bits (224), Expect = 6e-022
Identities = 41/56 (73%), Positives = 48/56 (85%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL++D KPRL+WT +LH+RFV+AV QLGGP KATPK IMR M + GLTLYHLKSH
Sbjct: 239 LVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSH 406
>gb|BF651193.1|BF651193 NF102H07EC1F1062 Elicited cell culture Medicago truncatula cDNA
clone NF102H07EC 5', mRNA sequence
Length = 632
Score = 105 bits (224), Expect = 6e-022
Identities = 41/56 (73%), Positives = 48/56 (85%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL++D KPRL+WT +LH+RFV+AV QLGGP KATPK IMR M + GLTLYHLKSH
Sbjct: 262 LVLTSDPKPRLRWTTDLHQRFVDAVTQLGGPTKATPKAIMRTMNVKGLTLYHLKSH 429
>gb|AW685481.1|AW685481 NF030D05NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF030D05NR 5', mRNA sequence
Length = 656
Score = 105 bits (223), Expect = 8e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP KATPK IMR M + GLTL+HLKSH
Sbjct: 339 LVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 506
>gb|AW686035.1|AW686035 NF032G08NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF032G08NR 5', mRNA sequence
Length = 658
Score = 105 bits (223), Expect = 8e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +2
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP KATPK IMR M + GLTL+HLKSH
Sbjct: 302 LVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 469
>gb|AW736264.1|AW736264 EST332326 KV3 Medicago truncatula cDNA clone pKV3-12O2, mRNA
sequence
Length = 547
Score = 105 bits (223), Expect = 8e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP KATPK IMR M + GLTL+HLKSH
Sbjct: 178 LVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 345
>gb|AW774787.1|AW774787 EST333938 KV3 Medicago truncatula cDNA clone pKV3-23N22, mRNA
sequence
Length = 694
Score = 105 bits (223), Expect = 8e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP KATPK IMR M + GLTL+HLKSH
Sbjct: 217 LVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 384
>gb|BG645083.1|BG645083 EST506702 KV3 Medicago truncatula cDNA clone pKV3-39M15 5' end,
mRNA sequence
Length = 762
Score = 105 bits (223), Expect = 8e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP KATPK IMR M + GLTL+HLKSH
Sbjct: 217 LVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 384
>gb|CX530825.1|CX530825 s13dNF33F09MJ076_247665 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 612
Score = 105 bits (223), Expect = 8e-022
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +1 / +1
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPKTIMRLMGIPGLTLYHLKSH 582
LVL+ D KPRL+WT +LHERFV+AV QLGGP KATPK IMR M + GLTL+HLKSH
Sbjct: 235 LVLTADPKPRLRWTQDLHERFVDAVTQLGGPSKATPKAIMRTMNVKGLTLFHLKSH 402
>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
Length = 243542
Score = 69.3 bits (145), Expect(2) = 7e-021
Identities = 25/31 (80%), Positives = 30/31 (96%)
Frame = +1 / -1
Query: 418 VLSTDAKPRLKWTPELHERFVEAVHQLGGPD 510
VLSTDAKPRLKWTPELH+RF++A++QLGG D
Sbjct: 23468 VLSTDAKPRLKWTPELHQRFIDAINQLGGAD 23376
Score = 51.9 bits (107), Expect(2) = 7e-021
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = +1 / -1
Query: 511 KATPKTIMRLMGIPGLTLYHLKSH 582
+ATPK+IMR+M IPGLTLYHLKSH
Sbjct: 23258 EATPKSIMRVMEIPGLTLYHLKSH 23187
>gb|BF003246.1|BF003246 EST431674 KV1 Medicago truncatula cDNA clone pKV1-2D23, mRNA
sequence
Length = 615
Score = 63.8 bits (133), Expect(2) = 7e-021
Identities = 25/36 (69%), Positives = 30/36 (83%)
Frame = +1 / +3
Query: 418 VLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 525
VLSTDAKPRLKWT ELH+RF +A++QLGG K+ K
Sbjct: 3 VLSTDAKPRLKWTHELHQRFTDAINQLGGA*KSNTK 110
Score = 57.4 bits (119), Expect(2) = 7e-021
Identities = 21/25 (84%), Positives = 25/25 (100%)
Frame = +1 / +1
Query: 508 DKATPKTIMRLMGIPGLTLYHLKSH 582
+KATPK++MR+MGIPGLTLYHLKSH
Sbjct: 94 EKATPKSLMRVMGIPGLTLYHLKSH 168
>gb|BQ148034.1|BQ148034 NF058A08FL1F1065 Developing flower Medicago truncatula cDNA clone
NF058A08FL 5', mRNA sequence
Length = 671
Score = 62.5 bits (130), Expect(2) = 1e-020
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +1 / +1
Query: 499 GGPDKATPKTIMRLMGIPGLTLYHLKSH 582
GG +KATPK++MR+MGIPGLTLYHLKSH
Sbjct: 109 GGAEKATPKSLMRVMGIPGLTLYHLKSH 192
Score = 58.3 bits (121), Expect(2) = 1e-020
Identities = 24/37 (64%), Positives = 29/37 (78%)
Frame = +1 / +3
Query: 415 LVLSTDAKPRLKWTPELHERFVEAVHQLGGPDKATPK 525
LVLSTDAKPRLKWT ELH+RF +A++QL K+ K
Sbjct: 24 LVLSTDAKPRLKWTHELHQRFTDAINQLWRCRKSNTK 134
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 523,261,631
Number of Sequences: 392609
Number of extensions: 6534252
Number of successful extensions: 42397
Number of sequences better than 1.0e-020: 20
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 17701047560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)