TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750663.2.1
(1282 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR954191.1| Medicago truncatula chromosome 5 clone mte1... 473 e-140
gb|CG924847.1|CG924847 MBENA07TR mth2 Medicago truncatula g... 164 8e-092
gb|CG927590.1|CG927590 MBEKH04TFB mth2 Medicago truncatula ... 265 2e-071
gb|BI262950.1|BI262950 NF035A12PL1F1097 Phosphate starved l... 127 2e-059
emb|CR497367.1| mth2-173G20RM1 BAC end, cultivar Jemalong A... 189 7e-047
gb|BI270342.1|BI270342 NF009G01FL1F1008 Developing flower M... 132 2e-031
>emb|CR954191.1| Medicago truncatula chromosome 5 clone mte1-26e13, WORKING DRAFT
SEQUENCE
Length = 94044
Score = 473 bits (1027), Expect(2) = e-140
Identities = 203/338 (60%), Positives = 256/338 (75%)
Frame = -1 / +1
Query: 1282 IVQSTVMPCALVEKAIFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCENIT 1103
IVQSTVMPC VEKA+FGLLRIC RLLPYKEN+ DELLRSLQLVLKLDARVAD Y E IT
Sbjct: 31912 IVQSTVMPCTQVEKAVFGLLRICHRLLPYKENMTDELLRSLQLVLKLDARVADTYYEQIT 32091
Query: 1102 QEVARLVKANAAHIKSQMGWRTVILLLSITARHPDASEVGFEAIVFIMTEGAHLSLANYG 923
QEV+ LVKANA+HI+SQ+GWRT+ LLSITARH ++SE GF+A+ FIM++GAH+ +N+
Sbjct: 32092 QEVSNLVKANASHIRSQLGWRTITSLLSITARHLESSEAGFDALFFIMSDGAHILPSNFA 32271
Query: 922 FCIDAARQFAESRVGLADRSVRALDLMSDSVRNLALWSQEIKATTFEEGEKGPEAIREMW 743
C+DAA+QFAESRVG +RSV ALDLM+ S+ W+ + K T EE K + I +MW
Sbjct: 32272 LCVDAAKQFAESRVGQVERSVVALDLMAGSINCFEKWANDAKQATTEEMAKMLQNIEDMW 32451
Query: 742 XXXXXXXXXXXLDQREEVRNHALASLQRCLTSTGELCLQSATWSHAFDLVIFSLLDDLLE 563
+DQREEVRNHAL SLQ CLT++ + L W FD VIF++LDDLLE
Sbjct: 32452 LRLVQGLKKLCMDQREEVRNHALLSLQNCLTASVGIHLPHDLWLQCFDQVIFTVLDDLLE 32631
Query: 562 ISQNHSQKDYRNMEGSLVLAMKLVAKVYLQLLPDLFGLSSFCKLWLGVLSRMEKYVKVKV 383
SQ HS KDYRNMEG+L+LA+KL++KV+L LL DL + F KLWL VL+R E ++KVK+
Sbjct: 32632 SSQTHSPKDYRNMEGTLILALKLLSKVFLLLLQDLSQSTDFSKLWLNVLNRFEIFMKVKI 32811
Query: 382 RGKRSDRLQEVVPDLLKNILLVMKSKGILAKRSTIGGD 269
RG+RS++ QE+VP+L+KN LLVMK+ +L + S+ G +
Sbjct: 32812 RGRRSEKFQELVPELMKNTLLVMKASHVLEQSSSSGDE 32925
Score = 182 bits (393), Expect = 8e-045
Identities = 113/322 (35%), Positives = 172/322 (53%)
Frame = +2 / -1
Query: 314 HHEQNVLEQVRDHLLQPVAPLASDLDLDVLLHPAQDPQPQLAETA*AEKVRQELEVYLRN 493
H++Q+VL ++RD LL+ +A + + DL Q+ QPQ AE V + E R
Sbjct: 32880 HNKQSVLHKLRDKLLKLLASPSPNFDLHKYFKTIQNIQPQFAEVCRL**VLE*QEENFRQ 32701
Query: 494 QLHGEHK*PFHVSVVLLGVVLADLQQIIEQGEYDEVKGMGPRRGLEAEFSRGC*ASLERS 673
+L G++K FHV VVL V L +Q+I+ GE VK + P+ E + C*A L+
Sbjct: 32700 ELQGKNKCSFHVPVVLWRVRLRTFKQVIQHGEDYLVKTL*PQVMWEMNSN*CC*AILQ** 32521
Query: 674 QRMVSHLLPLIQAQFLQCLQQPEPHLPYRLRPFLAFFKCRRFYLLGPQGKVSDGVGHQVQ 853
QR+VS+L L+ F L +P+PH+ L+ FF ++ P K D H ++
Sbjct: 32520 QRVVSNLFSLVHT*FF*SLYEPQPHVLNILQHLCHFFCRCLLSIVCPLLKTIDRPCH*IK 32341
Query: 854 GTDRPIS*TNSRLGKLPCRIDAEAIVR**KVSPLCHDEHDSLKTDFGSIWMACCNGEQQY 1033
RP++ +N+R GKL C I E+ +R V + H+E +K+ ++ N +Q
Sbjct: 32340 CHYRPLNLSNTRFGKLLCSIYTESKIRWKYVGSI*HNEKQCIKSSLR*FQVSSSNRKQ*C 32161
Query: 1034 YCSPAHL*LYMCRICFDEPCNLLCDVLTIRICYPCVELEN*LQRPQ*FISKILLVW*QPL 1213
Y P+ L M ICF + N LC++L + I ++L++ LQ PQ FI +L V +
Sbjct: 32160 YRPPS*LRSDMRSICFHKVTNFLCNLLIVCISNTGIKLQDKLQGPQKFIGHVLFVGK*AM 31981
Query: 1214 AYPQESKNSFLHESTRHNCGLN 1279
A PQESKNS L+ TRH+ GL+
Sbjct: 31980 ANPQESKNSLLYLCTRHHSGLH 31915
Score = 166 bits (357), Expect(3) = 2e-053
Identities = 87/170 (51%), Positives = 103/170 (60%)
Frame = +3 / -2
Query: 771 FSPSSNVVAFISWDHKARFLTESDIKSRARTDLSAKPTLDSANCRAASMQKP*FASER*A 950
F+ SS V S+ H ++ L + I+S A TD S PT DSANC AAS Q+ A
Sbjct: 32423 FAISSVVACLASFAHFSKQLIDPAIRSSATTDRSTCPTRDSANCFAASTQRAKLDGSMWA 32244
Query: 951 PSVMMNTIASKPTSEASGWRAVMESSNITVLQPICDFICAAFALTSRATSCVMFSQYASA 1130
PS +M AS P S+ S AV+ESS++ V P D I AFA T TSCV+ S Y SA
Sbjct: 32243 PSDIMKNNASNPASDDSKCLAVIESSDVIVRHPN*DLI*EAFAFTRLLTSCVICS*YVSA 32064
Query: 1131 TRASSLRTNCNDLSNSSARFSLYGSNLWHILRSPKIAFSTRAHGITVD*T 1280
TRASS RT+C DL +SS FSL GS W IL+SPK AFST GITVD T
Sbjct: 32063 TRASSFRTSCRDLKSSSVMFSL*GSKRWQILKSPKTAFSTCVQGITVDCT 31914
Score = 58.8 bits (122), Expect(3) = 2e-053
Identities = 38/96 (39%), Positives = 51/96 (53%)
Frame = +3 / -2
Query: 405 SIRLRTPSHSLQKLLRPKRSGKSWRYTFATSFMASTSDPSMFL*SFWEWFWLISSKSSSK 584
S R +T +H+L K + RS + R T SF A S PSMF *SF E +SS+SSS
Sbjct: 32789 SKRFKTFNHNLLKSVDCDRSWSNKRKTLDRSFKARISVPSMFR*SFGECV*ELSSRSSST 32610
Query: 585 ENMTRSKAWDHVADWRQSSPVDVRHRWREASAWFRT 692
+T SK +H + R V+ + +AWFRT
Sbjct: 32609 VKITWSKHCNHKSCGR*IPTDAVKQFCNDNNAWFRT 32502
Score = 49.2 bits (101), Expect(2) = e-140
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = -1 / +1
Query: 268 SLWELTWLHAHNISASLLPDVFPSQEYEQ 182
SLWELTW+H +NI+ SL +VFP QE +Q
Sbjct: 32929 SLWELTWVHINNIAPSLQSEVFPEQEAKQ 33015
Score = 24.9 bits (48), Expect(3) = 2e-053
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3 / -2
Query: 183 CSYSWLGKTSGSRLAEMLCA*SHVSSHRLSPPIVLL 290
C S G TS +L +HVSSH+L +LL
Sbjct: 33014 CLASCSGNTSDCNDGAILFICTHVSSHKLFSSPLLL 32907
>gb|CG924847.1|CG924847 MBENA07TR mth2 Medicago truncatula genomic clone 6A13, DNA sequence
Length = 852
Score = 164 bits (352), Expect(3) = 8e-092
Identities = 71/118 (60%), Positives = 88/118 (74%)
Frame = -1 / +2
Query: 1132 VADAYCENITQEVARLVKANAAHIKSQMGWRTVILLLSITARHPDASEVGFEAIVFIMTE 953
VAD Y + ITQEV+RLVKANA+ I+S +GWRT+ LLS+TARH +ASEVGF+ + FIM++
Sbjct: 11 VADVYYDQITQEVSRLVKANASRIRSHIGWRTITSLLSVTARHLEASEVGFDTLSFIMSD 190
Query: 952 GAHLSLANYGFCIDAARQFAESRVGLADRSVRALDLMSDSVRNLALWSQEIKATTFEE 779
G +L ANY CIDAARQFAESRVGL DRS+ +LDLM S L W+ + K EE
Sbjct: 191 GNYLLPANYILCIDAARQFAESRVGLVDRSIGSLDLMVGSFNCLQKWTSDAKQAAKEE 364
Score = 128 bits (275), Expect(3) = 8e-092
Identities = 61/114 (53%), Positives = 74/114 (64%)
Frame = -1 / +2
Query: 799 KATTFEEGEKGPEAIREMWXXXXXXXXXXXLDQREEVRNHALASLQRCLTSTGELCLQSA 620
+A EE K + I EMW LDQREEVRNHAL SLQ+C+T G+ L
Sbjct: 347 QAAKEEEVAKMLQDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCMTEAGKTHLPGD 526
Query: 619 TWSHAFDLVIFSLLDDLLEISQNHSQKDYRNMEGSLVLAMKLVAKVYLQLLPDL 458
W FD VIF+LLDDLL+ISQ SQKDYRN+E +L LA+KL+ KV+L LL +L
Sbjct: 527 LWLQCFDQVIFTLLDDLLDISQERSQKDYRNIEETLTLALKLLFKVFLLLLQEL 688
Score = 115 bits (246), Expect(3) = 2e-041
Identities = 62/119 (52%), Positives = 72/119 (60%)
Frame = +3 / -1
Query: 780 SSNVVAFISWDHKARFLTESDIKSRARTDLSAKPTLDSANCRAASMQKP*FASER*APSV 959
SS F S H + L E I+S DLS PT DSANC AASMQ+ * A +* PS
Sbjct: 363 SSFAACFASLVHFCKQLKEPTIRSSEPMDLSTSPTRDSANCLAASMQRI*LAGSK*FPSD 184
Query: 960 MMNTIASKPTSEASGWRAVMESSNITVLQPICDFICAAFALTSRATSCVMFSQYASATR 1136
+MN S PTS+AS AV ESS++ V PI D I AFALT R TSCV+ S Y SAT+
Sbjct: 183 IMNDSVSNPTSDASKCLAVTESSDVIVRHPI*DLIRDAFALTRRLTSCVI*S*YTSATQ 7
Score = 86.3 bits (182), Expect(3) = 8e-092
Identities = 36/49 (73%), Positives = 42/49 (85%)
Frame = -1 / +2
Query: 445 SFCKLWLGVLSRMEKYVKVKVRGKRSDRLQEVVPDLLKNILLVMKSKGI 299
+FCKLW+GVLS EKY+KVKVRGKRS+ LQ VP+LLKN L+VMKS GI
Sbjct: 704 AFCKLWVGVLSHAEKYMKVKVRGKRSEMLQLPVPELLKNALVVMKSGGI 850
Score = 66.6 bits (139), Expect(3) = 2e-041
Identities = 33/87 (37%), Positives = 53/87 (60%)
Frame = +2 / -3
Query: 494 QLHGEHK*PFHVSVVLLGVVLADLQQIIEQGEYDEVKGMGPRRGLEAEFSRGC*ASLERS 673
+L G+ K F+V V+LL L +++Q+I+QGE ++ + P+ E + C A L+R
Sbjct: 652 ELQGKSKCFFYVPVILLRAFLRNIKQVIQQGEDHLIETL*PQITWEMSLASFCHALLQR* 473
Query: 674 QRMVSHLLPLIQAQFLQCLQQPEPHLP 754
Q ++S+LL L+QA F L P+PH P
Sbjct: 472 QCVISNLLSLVQAYFP*SLY*PQPHFP 392
Score = 27.6 bits (54), Expect(3) = 2e-041
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +3 / -1
Query: 399 YFSIRLRTPSHSLQK 443
YFS L TP+HSLQK
Sbjct: 750 YFSA*LSTPTHSLQK 706
>gb|CG927590.1|CG927590 MBEKH04TFB mth2 Medicago truncatula genomic clone 73B8, DNA sequence
Length = 892
Score = 265 bits (574), Expect(2) = 2e-071
Identities = 114/156 (73%), Positives = 133/156 (85%)
Frame = -1 / -3
Query: 1246 EKAIFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCENITQEVARLVKANAA 1067
EKA+FGLLRI +RLLPYKEN+ADELLRSLQLVLKLDARVADAYCE ITQEV+RLVKANA+
Sbjct: 890 EKAVFGLLRIAKRLLPYKENIADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANAS 711
Query: 1066 HIKSQMGWRTVILLLSITARHPDASEVGFEAIVFIMTEGAHLSLANYGFCIDAARQFAES 887
HI+SQ+GWR + LLSITARH +ASE GF+A++FIM++GAHL ANY C+D ARQFAES
Sbjct: 710 HIRSQLGWRAITSLLSITARHIEASEAGFDALLFIMSDGAHLLPANYVLCVDTARQFAES 531
Query: 886 RVGLADRSVRALDLMSDSVRNLALWSQEIKATTFEE 779
RVG A+RSVRALDLM+ SV LA W+ E K +E
Sbjct: 530 RVGQAERSVRALDLMTGSVNCLAQWTSEGKEAMEDE 423
Score = 199 bits (430), Expect(2) = 1e-056
Identities = 88/150 (58%), Positives = 111/150 (74%)
Frame = -1 / -3
Query: 811 SQEIKATTFEEGEKGPEAIREMWXXXXXXXXXXXLDQREEVRNHALASLQRCLTSTGELC 632
S+ +A E+ K + I +MW LDQREEVRNHAL+SLQ+CL ++
Sbjct: 452 SEGKEAMEDEQMTKLSKDIGDMWLILGQGLRKVCLDQREEVRNHALSSLQKCLIGADDIY 273
Query: 631 LQSATWSHAFDLVIFSLLDDLLEISQNHSQKDYRNMEGSLVLAMKLVAKVYLQLLPDLFG 452
L W FDLVIF++LDDLLEISQ HSQKDYRNMEG+L+LA+KL++KV+LQ LP L
Sbjct: 272 LPYGKWLDCFDLVIFTVLDDLLEISQGHSQKDYRNMEGTLILAVKLLSKVFLQSLPVLSQ 93
Query: 451 LSSFCKLWLGVLSRMEKYVKVKVRGKRSDR 362
L++FCKLWLGVL+RMEKY+KVKVRGKRS++
Sbjct: 92 LTTFCKLWLGVLTRMEKYMKVKVRGKRSEK 3
Score = 156 bits (335), Expect(2) = 2e-051
Identities = 82/156 (52%), Positives = 101/156 (64%)
Frame = +3 / +1
Query: 780 SSNVVAFISWDHKARFLTESDIKSRARTDLSAKPTLDSANCRAASMQKP*FASER*APSV 959
SS++ + S H A+ LT+ ++S ARTD SA PT DSANC A S Q+ * A + APS
Sbjct: 424 SSSIASLPSLVHWAKQLTDPVMRSSARTDRSAWPTRDSANCLAVSTQRT*LAGSKWAPSD 603
Query: 960 MMNTIASKPTSEASGWRAVMESSNITVLQPICDFICAAFALTSRATSCVMFSQYASATRA 1139
+M AS P S+AS AVMESS++ P D + AFA T R TS V+ SQ ASATRA
Sbjct: 604 IMKRSASNPASDASMCLAVMESSDVIARHPNWDLM*EAFAFTRRLTS*VICSQ*ASATRA 783
Query: 1140 SSLRTNCNDLSNSSARFSLYGSNLWHILRSPKIAFS 1247
SS +T+C DL +SSA FSL GSN + RSPK AFS
Sbjct: 784 SSFKTSCKDLKSSSAMFSL*GSNRLAMRRSPKTAFS 891
Score = 68.9 bits (144), Expect(2) = 2e-051
Identities = 39/98 (39%), Positives = 54/98 (55%)
Frame = +3 / +1
Query: 399 YFSIRLRTPSHSLQKLLRPKRSGKSWRYTFATSFMASTSDPSMFL*SFWEWFWLISSKSS 578
YFSI + TP+HSLQK++ ++G R T SF A PS+ *SF E IS +SS
Sbjct: 40 YFSILVSTPNHSLQKVVNCDKTGSD*RKTLDKSFTAKIRVPSILR*SF*ECPCEISRRSS 219
Query: 579 SKENMTRSKAWDHVADWRQSSPVDVRHRWREASAWFRT 692
S +TRSK +H+ R S ++H ++ A F T
Sbjct: 220 STVKITRSKQSNHLPYGR*MSSAPIKHFCKDDKA*FLT 333
Score = 46.4 bits (95), Expect(2) = 1e-056
Identities = 23/77 (29%), Positives = 38/77 (49%)
Frame = -3 / -2
Query: 1244 ESYFWTPEDMPEVATIQGESC**ITEVVAVSSQARRTGSRCVL*EHHTGGCTARQSKCGT 1065
E FWTP +A +QG+ C** E+ A +A C+L* ++G + KC +
Sbjct: 888 EGCFWTPAHCQAIAPLQGKHC**TFEIFATCLKA*CACR*CLL*TDYSGSQPPCEGKCFS 709
Query: 1064 YKVTDGLENSNIAALHY 1014
+K+ + + I H+
Sbjct: 708 HKIPIRMACNYITTFHH 658
Score = 29.9 bits (59), Expect(2) = 2e-071
Identities = 24/68 (35%), Positives = 31/68 (45%)
Frame = -2 / -1
Query: 588 SPCSMICWRSARTTPRRTTETWKGHLCSP*SWLRRYTSSSCRTFSA*AVSASCGWGS*AG 409
S C MI R R RRTT WK L *S ++ + + + * SAS G *
Sbjct: 229 SLCLMIFSRFHRDILRRTTAIWKAPLS*Q*SSCPKFFFNHSQFYHN*LPSASYG*VY*RE 50
Query: 408 WRSTSRSR 385
W++ R R
Sbjct: 49 WKNI*R*R 26
>gb|BI262950.1|BI262950 NF035A12PL1F1097 Phosphate starved leaf Medicago truncatula cDNA
clone NF035A12PL 5', mRNA sequence
Length = 582
Score = 127 bits (272), Expect(2) = 2e-059
Identities = 58/102 (56%), Positives = 69/102 (67%)
Frame = -1 / +1
Query: 763 EAIREMWXXXXXXXXXXXLDQREEVRNHALASLQRCLTSTGELCLQSATWSHAFDLVIFS 584
E I EMW LDQREEVRNHAL SLQ+C+T G+ L W FD VIF+
Sbjct: 7 EDIGEMWLRLVQGLRKVCLDQREEVRNHALLSLQKCMTEAGKTHLPGDLWLQCFDQVIFT 186
Query: 583 LLDDLLEISQNHSQKDYRNMEGSLVLAMKLVAKVYLQLLPDL 458
LLDDLL+ISQ SQKDYRN+E +L LA+KL+ KV+L LL +L
Sbjct: 187 LLDDLLDISQERSQKDYRNIEETLTLALKLLFKVFLLLLQEL 312
Score = 124 bits (265), Expect(2) = 2e-059
Identities = 52/85 (61%), Positives = 64/85 (75%)
Frame = -1 / +1
Query: 445 SFCKLWLGVLSRMEKYVKVKVRGKRSDRLQEVVPDLLKNILLVMKSKGILAKRSTIGGDS 266
+FCKLW+GVLS EKY+KVKVRGKRS+ LQ VP+LLKN L+VMKS GIL + S + +
Sbjct: 328 AFCKLWVGVLSHAEKYMKVKVRGKRSEMLQLPVPELLKNALVVMKSGGILVESSGLXESN 507
Query: 265 LWELTWLHAHNISASLLPDVFPSQE 191
LWELTWLH NI+ SL +VF +
Sbjct: 508 LWELTWLHMKNIAPSLQXEVFQEHD 582
>emb|CR497367.1| mth2-173G20RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 521
Score = 189 bits (408), Expect = 7e-047
Identities = 82/122 (67%), Positives = 99/122 (81%)
Frame = -1 / +3
Query: 1144 LDARVADAYCENITQEVARLVKANAAHIKSQMGWRTVILLLSITARHPDASEVGFEAIVF 965
LDARVADAYCE+I QEV+RLVKANA+ I+SQ+GWR + LLSITARH +ASE GF+A++F
Sbjct: 3 LDARVADAYCEHIIQEVSRLVKANASLIRSQLGWRAITSLLSITARHIEASEAGFDALLF 182
Query: 964 IMTEGAHLSLANYGFCIDAARQFAESRVGLADRSVRALDLMSDSVRNLALWSQEIKATTF 785
IM++GAHL ANY C+D ARQFAESRVG A+RSVRALDLM+ SV LA W+ E K
Sbjct: 183 IMSDGAHLLPANYVLCVDTARQFAESRVGQAERSVRALDLMTGSVNCLAQWTSEGKEAME 362
Query: 784 EE 779
+E
Sbjct: 363 DE 368
Score = 117 bits (250), Expect = 4e-025
Identities = 63/122 (51%), Positives = 77/122 (63%)
Frame = +3 / -2
Query: 780 SSNVVAFISWDHKARFLTESDIKSRARTDLSAKPTLDSANCRAASMQKP*FASER*APSV 959
SS++ + S H A+ LT+ ++S ARTD SA PT DSANC A S Q+ * A + APS
Sbjct: 367 SSSIASLPSLVHWAKQLTDPVMRSSARTDRSAWPTRDSANCLAVSTQRT*LAGSKWAPSD 188
Query: 960 MMNTIASKPTSEASGWRAVMESSNITVLQPICDFICAAFALTSRATSCVMFSQYASATRA 1139
+M AS P S+AS AVMESS++ P D I AFA T R TS +M SQ ASATRA
Sbjct: 187 IMKRSASNPASDASMCLAVMESSDVIARHPNWDLIREAFAFTRRLTS*IMCSQ*ASATRA 8
Query: 1140 SS 1145
SS
Sbjct: 7 SS 2
>gb|BI270342.1|BI270342 NF009G01FL1F1008 Developing flower Medicago truncatula cDNA clone
NF009G01FL 5', mRNA sequence
Length = 370
Score = 132 bits (282), Expect(2) = 2e-031
Identities = 56/97 (57%), Positives = 72/97 (74%)
Frame = -1 / +2
Query: 664 QRCLTSTGELCLQSATWSHAFDLVIFSLLDDLLEISQNHSQKDYRNMEGSLVLAMKLVAK 485
Q CLT++ + L W FD VIF++LDDLLE SQ HS KDYRNMEG+L+LA+KL++K
Sbjct: 2 QNCLTASVGIHLPHDLWLQCFDQVIFTVLDDLLESSQTHSPKDYRNMEGTLILALKLLSK 181
Query: 484 VYLQLLPDLFGLSSFCKLWLGVLSRMEKYVKVKVRGK 374
V+L LL DL + F KLWL VL+R E ++KVK+RGK
Sbjct: 182 VFLLLLQDLSQSTDFSKLWLNVLNRFEIFMKVKIRGK 292
Score = 25.8 bits (50), Expect(2) = 2e-031
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1 / +1
Query: 364 RLQEVVPDLLKNILLVMKS 308
+ QE+VP L+KN LL +S
Sbjct: 304 KFQELVPXLMKNTLLCXES 360
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,192,953,539
Number of Sequences: 392609
Number of extensions: 15814762
Number of successful extensions: 63343
Number of sequences better than 1.0e-020: 9
length of database: 147,244,331
effective HSP length: 56
effective length of database: 125,258,227
effective search space used: 46345543990
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)