TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750560.2.1
(660 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX532605.1|CX532605 s13dNF88C12MJ086_271495 Methyl Jasmo... 166 1e-055
gb|BQ140486.1|BQ140486 NF036C01PH1F1006 Phoma-infected Medi... 163 7e-053
gb|BG453543.1|BG453543 NF093C04LF1F1023 Developing leaf Med... 163 2e-047
gb|BF636203.1|BF636203 NF070A10DT1F1072 Drought Medicago tr... 163 4e-046
gb|CX533638.1|CX533638 s13dNF0HH12MJ096_320429 Methyl Jasmo... 166 2e-042
gb|BF641235.1|BF641235 NF061G12IN1F1099 Insect herbivory Me... 163 3e-039
gb|CX526857.1|CX526857 s13dNF27D06AT058_514226 Aphid-Infect... 163 3e-039
gb|AC148097.7| Medicago truncatula clone mth2-15a20, comple... 86 8e-039
gb|AC140551.8| Medicago truncatula clone mth2-80i8, complet... 86 1e-038
gb|BF643637.1|BF643637 NF021H11EC1F1096 Elicited cell cultu... 157 1e-037
gb|AW690016.1|AW690016 NF026E06ST1F1000 Developing stem Med... 156 3e-037
gb|AC126794.15| Medicago truncatula clone mth2-24j7, comple... 84 2e-035
gb|AW690249.2|AW690249 NF031B04ST1F1000 Developing stem Med... 117 8e-035
gb|BG448768.1|BG448768 NF044C12NR1F1087 Nodulated root Medi... 117 8e-035
gb|AW694907.2|AW694907 NF081D02ST1F1016 Developing stem Med... 117 8e-035
gb|AW696913.1|AW696913 NF110C08ST1F1065 Developing stem Med... 78 2e-032
gb|AW691338.1|AW691338 NF040D03ST1F1000 Developing stem Med... 136 4e-031
gb|BE325938.2|BE325938 NF083A06ST1F1038 Developing stem Med... 65 5e-031
gb|AW684240.1|AW684240 NF014E04NR1F1000 Nodulated root Medi... 95 1e-030
gb|AW695486.1|AW695486 NF095D02ST1F1016 Developing stem Med... 126 4e-028
gb|BG451672.1|BG451672 NF092H12DT1F1101 Drought Medicago tr... 57 2e-026
gb|AW736016.1|AW736016 EST332002 KV3 Medicago truncatula cD... 76 3e-025
gb|BG454986.1|BG454986 NF112A02LF1F1005 Developing leaf Med... 52 1e-024
gb|BE204967.1|BE204967 EST397643 KV0 Medicago truncatula cD... 62 6e-024
gb|CX526282.1|CX526282 s13dNF34B12AT101_510308 Aphid-Infect... 111 1e-023
gb|AW688973.1|AW688973 NF013H09ST1F1000 Developing stem Med... 95 3e-022
gb|BI308096.1|BI308096 EST529506 GPOD Medicago truncatula c... 68 5e-022
gb|CX526327.1|CX526327 s13dNF34F09AT079_510398 Aphid-Infect... 68 1e-021
gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone m... 66 2e-021
>gb|CX532605.1|CX532605 s13dNF88C12MJ086_271495 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 599
Score = 166 bits (357), Expect(2) = 1e-055
Identities = 65/87 (74%), Positives = 76/87 (87%)
Frame = +3 / +1
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL++ELWHACAGPLVT+PR+GE VYYFPQGHMEQLEAS +Q L+Q +P F+LP KILCK
Sbjct: 10 DALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCK 189
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
VVN+ LRAE ++DEVYAQI L PE DQ
Sbjct: 190 VVNIHLRAEPETDEVYAQITLLPETDQ 270
Score = 71.6 bits (150), Expect(2) = 1e-055
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
RC V+SFCKTLTASDTSTHGGFSVLRRHA++
Sbjct: 313 RCTVHSFCKTLTASDTSTHGGFSVLRRHADD 405
>gb|BQ140486.1|BQ140486 NF036C01PH1F1006 Phoma-infected Medicago truncatula cDNA clone
NF036C01PH 5', mRNA sequence
Length = 626
Score = 163 bits (350), Expect(2) = 7e-053
Identities = 61/86 (70%), Positives = 78/86 (90%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 154 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 333
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 334 INVMLKAEPDTDEVFAQVTLVPEPNQ 411
Score = 65.7 bits (137), Expect(2) = 7e-053
Identities = 26/31 (83%), Positives = 29/31 (93%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R +V+SFCKTLTASDTSTHGGFSVL RHA+E
Sbjct: 457 RFHVHSFCKTLTASDTSTHGGFSVLXRHADE 549
>gb|BG453543.1|BG453543 NF093C04LF1F1023 Developing leaf Medicago truncatula cDNA clone
NF093C04LF 5', mRNA sequence
Length = 673
Score = 163 bits (350), Expect(2) = 2e-047
Identities = 61/86 (70%), Positives = 78/86 (90%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 295 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 474
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 475 INVMLKAEPDTDEVFAQVTLVPEPNQ 552
Score = 47.8 bits (98), Expect(2) = 2e-047
Identities = 18/22 (81%), Positives = 20/22 (90%)
Frame = +3 / +1
Query: 567 RCNVYSFCKTLTASDTSTHGGF 632
R +V+SFCKTLTASDT THGGF
Sbjct: 598 RFHVHSFCKTLTASDTXTHGGF 663
>gb|BF636203.1|BF636203 NF070A10DT1F1072 Drought Medicago truncatula cDNA clone NF070A10DT
5', mRNA sequence
Length = 696
Score = 163 bits (350), Expect(2) = 4e-046
Identities = 61/86 (70%), Positives = 78/86 (90%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 310 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 489
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 490 INVMLKAEPDTDEVFAQVTLVPEPNQ 567
Score = 43.2 bits (88), Expect(2) = 4e-046
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +3 / +3
Query: 594 TLTASDTSTHGGFSVLRRH 650
TLTASDTSTHGGFSVL+ H
Sbjct: 639 TLTASDTSTHGGFSVLKPH 695
>gb|CX533638.1|CX533638 s13dNF0HH12MJ096_320429 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 606
Score = 166 bits (357), Expect(2) = 2e-042
Identities = 65/87 (74%), Positives = 76/87 (87%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL++ELWHACAGPLVT+PR+GE VYYFPQGHMEQLEAS +Q L+Q +P F+LP KILCK
Sbjct: 269 DALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCK 448
Query: 444 VVNVELRAETDSDEVYAQIMLQPEADQ 524
VVN+ LRAE ++DEVYAQI L PE DQ
Sbjct: 449 VVNIHLRAEPETDEVYAQITLLPETDQ 529
Score = 27.2 bits (53), Expect(2) = 2e-042
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTL 599
RC V+SFCKTL
Sbjct: 572 RCTVHSFCKTL 604
>gb|BF641235.1|BF641235 NF061G12IN1F1099 Insect herbivory Medicago truncatula cDNA clone
NF061G12IN 5', mRNA sequence
Length = 652
Score = 163 bits (350), Expect = 3e-039
Identities = 61/86 (70%), Positives = 78/86 (90%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 357 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 536
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 537 INVMLKAEPDTDEVFAQVTLVPEPNQ 614
>gb|CX526857.1|CX526857 s13dNF27D06AT058_514226 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 623
Score = 163 bits (350), Expect = 3e-039
Identities = 61/86 (70%), Positives = 78/86 (90%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 303 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 482
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 483 INVMLKAEPDTDEVFAQVTLVPEPNQ 560
>gb|AC148097.7| Medicago truncatula clone mth2-15a20, complete sequence
Length = 125098
Score = 85.8 bits (181), Expect(4) = 8e-039
Identities = 30/37 (81%), Positives = 36/37 (97%)
Frame = +3 / -3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLE 374
DAL++ELWHACAGPLVT+PR+GE VYYFPQGHMEQ++
Sbjct: 47672 DALYKELWHACAGPLVTLPREGERVYYFPQGHMEQVK 47562
Score = 71.6 bits (150), Expect(4) = 8e-039
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +3 / -1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
RC V+SFCKTLTASDTSTHGGFSVLRRHA++
Sbjct: 46759 RCTVHSFCKTLTASDTSTHGGFSVLRRHADD 46667
Score = 52.4 bits (108), Expect(4) = 8e-039
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +3 / -1
Query: 369 LEASTDQQLDQHLPLFDLPPKILCKVVNVELR 464
LEAS +Q L+Q +P F+LP KILCKVVN+ LR
Sbjct: 47251 LEASMNQGLEQQMPSFNLPSKILCKVVNIHLR 47156
Score = 32.7 bits (65), Expect(4) = 8e-039
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / -2
Query: 465 AETDSDEVYAQIMLQPEAD 521
AE ++DEVYAQI L PE D
Sbjct: 47031 AEPETDEVYAQITLLPETD 46975
>gb|AC140551.8| Medicago truncatula clone mth2-80i8, complete sequence
Length = 135244
Score = 85.8 bits (181), Expect(4) = 1e-038
Identities = 30/37 (81%), Positives = 36/37 (97%)
Frame = +3 / -3
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLE 374
DAL++ELWHACAGPLVT+PR+GE VYYFPQGHMEQ++
Sbjct: 47675 DALYKELWHACAGPLVTLPREGERVYYFPQGHMEQVK 47565
Score = 71.6 bits (150), Expect(4) = 1e-038
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +3 / -1
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
RC V+SFCKTLTASDTSTHGGFSVLRRHA++
Sbjct: 46762 RCTVHSFCKTLTASDTSTHGGFSVLRRHADD 46670
Score = 52.4 bits (108), Expect(4) = 1e-038
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +3 / -1
Query: 369 LEASTDQQLDQHLPLFDLPPKILCKVVNVELR 464
LEAS +Q L+Q +P F+LP KILCKVVN+ LR
Sbjct: 47254 LEASMNQGLEQQMPSFNLPSKILCKVVNIHLR 47159
Score = 32.7 bits (65), Expect(4) = 1e-038
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = +3 / -2
Query: 465 AETDSDEVYAQIMLQPEAD 521
AE ++DEVYAQI L PE D
Sbjct: 47034 AEPETDEVYAQITLLPETD 46978
>gb|BF643637.1|BF643637 NF021H11EC1F1096 Elicited cell culture Medicago truncatula cDNA
clone NF021H11EC 5', mRNA sequence
Length = 605
Score = 157 bits (338), Expect = 1e-037
Identities = 59/86 (68%), Positives = 77/86 (89%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 300 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 479
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+D+V+AQ+ L P +Q
Sbjct: 480 INVMLKAEPDTDDVFAQVTLVP*PNQ 557
>gb|AW690016.1|AW690016 NF026E06ST1F1000 Developing stem Medicago truncatula cDNA clone
NF026E06ST 5', mRNA sequence
Length = 632
Score = 156 bits (335), Expect = 3e-037
Identities = 58/86 (67%), Positives = 76/86 (88%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL P+ILC+V
Sbjct: 312 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPRILCRV 491
Query: 447 VNVELRAETDSDEVYAQIMLQPEADQ 524
+NV L+AE D+DEV+A + L P +Q
Sbjct: 492 INVMLKAEPDTDEVFAXVTLVPXPNQ 569
>gb|AC126794.15| Medicago truncatula clone mth2-24j7, complete sequence
Length = 129513
Score = 84.5 bits (178), Expect(3) = 2e-035
Identities = 30/35 (85%), Positives = 35/35 (100%)
Frame = +3 / -1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQL 371
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+
Sbjct: 50625 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQV 50521
Score = 68.4 bits (143), Expect(3) = 2e-035
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +3 / -3
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R +V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 49825 RFHVHSFCKTLTASDTSTHGGFSVLRRHADE 49733
Score = 53.3 bits (110), Expect(3) = 2e-035
Identities = 19/32 (59%), Positives = 28/32 (87%)
Frame = +3 / -1
Query: 369 LEASTDQQLDQHLPLFDLPPKILCKVVNVELR 464
+EAST+Q +QH+P++DL PKILC+V+NV L+
Sbjct: 50298 VEASTNQASEQHMPVYDLRPKILCRVINVMLK 50203
>gb|AW690249.2|AW690249 NF031B04ST1F1000 Developing stem Medicago truncatula cDNA clone
NF031B04ST 5', mRNA sequence
Length = 673
Score = 117 bits (250), Expect(2) = 8e-035
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = +3 / +1
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVE 458
ELWHACAGPLV +P G V YFPQGH EQ+ ST++++D ++P LPP+++C++ N+
Sbjct: 73 ELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLT 252
Query: 459 LRAETDSDEVYAQIMLQP 512
+ A+T++DEVYAQ+ LQP
Sbjct: 253 MHADTETDEVYAQMTLQP 306
Score = 51.0 bits (105), Expect(2) = 8e-035
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3 / +1
Query: 585 FCKTLTASDTSTHGGFSVLRRHAEE 659
FCK LTASDTSTHGGFSV RR AE+
Sbjct: 382 FCKILTASDTSTHGGFSVPRRAAEK 456
>gb|BG448768.1|BG448768 NF044C12NR1F1087 Nodulated root Medicago truncatula cDNA clone
NF044C12NR 5', mRNA sequence
Length = 671
Score = 117 bits (250), Expect(2) = 8e-035
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = +3 / +2
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVE 458
ELWHACAGPLV +P G V YFPQGH EQ+ ST++++D ++P LPP+++C++ N+
Sbjct: 77 ELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLT 256
Query: 459 LRAETDSDEVYAQIMLQP 512
+ A+T++DEVYAQ+ LQP
Sbjct: 257 MHADTETDEVYAQMTLQP 310
Score = 51.0 bits (105), Expect(2) = 8e-035
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3 / +2
Query: 585 FCKTLTASDTSTHGGFSVLRRHAEE 659
FCK LTASDTSTHGGFSV RR AE+
Sbjct: 386 FCKILTASDTSTHGGFSVPRRAAEK 460
>gb|AW694907.2|AW694907 NF081D02ST1F1016 Developing stem Medicago truncatula cDNA clone
NF081D02ST 5', mRNA sequence
Length = 614
Score = 117 bits (250), Expect(2) = 8e-035
Identities = 42/78 (53%), Positives = 61/78 (78%)
Frame = +3 / +3
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKVVNVE 458
ELWHACAGPLV +P G V YFPQGH EQ+ ST++++D ++P LPP+++C++ N+
Sbjct: 129 ELWHACAGPLVCLPADGSRVVYFPQGHSEQVAVSTNREVDTYIPNPSLPPQLICQLHNLT 308
Query: 459 LRAETDSDEVYAQIMLQP 512
+ A+T++DEVYAQ+ LQP
Sbjct: 309 MHADTETDEVYAQMTLQP 362
Score = 51.0 bits (105), Expect(2) = 8e-035
Identities = 21/25 (84%), Positives = 22/25 (88%)
Frame = +3 / +3
Query: 585 FCKTLTASDTSTHGGFSVLRRHAEE 659
FCK LTASDTSTHGGFSV RR AE+
Sbjct: 438 FCKILTASDTSTHGGFSVPRRAAEK 512
>gb|AW696913.1|AW696913 NF110C08ST1F1065 Developing stem Medicago truncatula cDNA clone
NF110C08ST 5', mRNA sequence
Length = 662
Score = 78.0 bits (164), Expect(3) = 2e-032
Identities = 28/50 (56%), Positives = 37/50 (74%)
Frame = +3 / +2
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPP 428
ELWHACAGPLV++P G V YFPQGH EQ+ ST++++D H+P + P
Sbjct: 173 ELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLP 322
Score = 53.8 bits (111), Expect(3) = 2e-032
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3 / +3
Query: 585 FCKTLTASDTSTHGGFSVLRRHAEE 659
FCKTLTASDTSTHGGFSV RR AE+
Sbjct: 486 FCKTLTASDTSTHGGFSVPRRAAEK 560
Score = 46.4 bits (95), Expect(3) = 2e-032
Identities = 15/31 (48%), Positives = 26/31 (83%)
Frame = +3 / +2
Query: 420 LPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
LPP+++C++ N+ + A+ ++DEVYAQ+ LQP
Sbjct: 317 LPPQLICQLHNLTMHADVETDEVYAQMTLQP 409
>gb|AW691338.1|AW691338 NF040D03ST1F1000 Developing stem Medicago truncatula cDNA clone
NF040D03ST 5', mRNA sequence
Length = 666
Score = 136 bits (291), Expect = 4e-031
Identities = 50/67 (74%), Positives = 63/67 (94%)
Frame = +3 / +3
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCKV 446
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL PKILC+V
Sbjct: 300 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRV 479
Query: 447 VNVELRA 467
+NV L+A
Sbjct: 480 INVMLKA 500
>gb|BE325938.2|BE325938 NF083A06ST1F1038 Developing stem Medicago truncatula cDNA clone
NF083A06ST 5', mRNA sequence
Length = 634
Score = 65.2 bits (136), Expect(3) = 5e-031
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +3 / +1
Query: 273 FRELWHACAGPLVTVPRQGELVYYFPQGHMEQ 368
+ ELWHACAGPL ++P++G +V YFPQGH+EQ
Sbjct: 178 YLELWHACAGPLTSLPKKGNVVVYFPQGHLEQ 273
Score = 55.6 bits (115), Expect(3) = 5e-031
Identities = 20/39 (51%), Positives = 30/39 (76%)
Frame = +3 / +1
Query: 405 LPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEAD 521
+P +DL P+I C+VVNV+L A ++DEVY Q+ L P+A+
Sbjct: 307 IPNYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAE 423
Score = 52.8 bits (109), Expect(3) = 5e-031
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3 / +2
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+ FCKTLT SDTSTHGGFSV RR AE+
Sbjct: 515 HMFCKTLTVSDTSTHGGFSVPRRAAED 595
>gb|AW684240.1|AW684240 NF014E04NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF014E04NR 5', mRNA sequence
Length = 542
Score = 95.5 bits (202), Expect(2) = 1e-030
Identities = 35/41 (85%), Positives = 41/41 (100%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q
Sbjct: 295 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQ 417
Score = 58.8 bits (122), Expect(2) = 1e-030
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = +3 / +2
Query: 396 DQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
+QH+P++DL P ILC+V+NV L+AE +D V+AQ+ L P
Sbjct: 425 EQHMPVYDLRPXILCRVINVMLKAEPXTDXVFAQVTLVP 541
>gb|AW695486.1|AW695486 NF095D02ST1F1016 Developing stem Medicago truncatula cDNA clone
NF095D02ST 5', mRNA sequence
Length = 480
Score = 126 bits (269), Expect = 4e-028
Identities = 48/62 (77%), Positives = 56/62 (90%)
Frame = +3 / +2
Query: 264 DALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKILCK 443
DAL++ELWHACAGPLVT+PR+GE VYYFPQGHMEQLEAS +Q L+Q +P F+LP KILCK
Sbjct: 293 DALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCK 472
Query: 444 VV 449
VV
Sbjct: 473 VV 478
>gb|BG451672.1|BG451672 NF092H12DT1F1101 Drought Medicago truncatula cDNA clone NF092H12DT
5', mRNA sequence
Length = 677
Score = 57.4 bits (119), Expect(3) = 2e-026
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +3 / +3
Query: 300 GPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPP 428
GPLV++P G V YFPQGH EQ+ ST++++D H+P + P
Sbjct: 3 GPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLP 131
Score = 53.8 bits (111), Expect(3) = 2e-026
Identities = 22/25 (88%), Positives = 23/25 (92%)
Frame = +3 / +3
Query: 585 FCKTLTASDTSTHGGFSVLRRHAEE 659
FCKTLTASDTSTHGGFSV RR AE+
Sbjct: 294 FCKTLTASDTSTHGGFSVPRRAAEK 368
Score = 46.4 bits (95), Expect(3) = 2e-026
Identities = 15/31 (48%), Positives = 26/31 (83%)
Frame = +3 / +3
Query: 420 LPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
LPP+++C++ N+ + A+ ++DEVYAQ+ LQP
Sbjct: 126 LPPQLICQLHNLTMHADVETDEVYAQMTLQP 218
>gb|AW736016.1|AW736016 EST332002 KV3 Medicago truncatula cDNA clone pKV3-5G1, mRNA
sequence
Length = 485
Score = 75.8 bits (159), Expect(3) = 3e-025
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +3 / +1
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDLPPKIL 437
ELWHACAGPLV++P+ G LVYYFPQGH EQ+ AST + +P + P L
Sbjct: 139 ELWHACAGPLVSLPQVGGLVYYFPQGHSEQVAASTRRIATSQIPNYPSLPSQL 297
Score = 46.9 bits (96), Expect(3) = 3e-025
Identities = 17/31 (54%), Positives = 25/31 (80%)
Frame = +3 / +1
Query: 420 LPPKILCKVVNVELRAETDSDEVYAQIMLQP 512
LP ++LC+V NV L A+ ++DE+YAQ+ LQP
Sbjct: 283 LPSQLLCQVQNVTLHADKETDEIYAQMTLQP 375
Score = 31.3 bits (62), Expect(3) = 3e-025
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +3 / +1
Query: 585 FCKTLTASDTST 620
FCKTLTASDTST
Sbjct: 448 FCKTLTASDTST 483
>gb|BG454986.1|BG454986 NF112A02LF1F1005 Developing leaf Medicago truncatula cDNA clone
NF112A02LF 5', mRNA sequence
Length = 559
Score = 51.9 bits (107), Expect(4) = 1e-024
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3 / +2
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+ FCKTLTASDTSTHGGFSV R AE+
Sbjct: 377 HMFCKTLTASDTSTHGGFSVPRXAAED 457
Score = 51.5 bits (106), Expect(4) = 1e-024
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3 / +2
Query: 384 DQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+Q D + ++PP + C+V++V+L AE SDEVY Q++L PE Q
Sbjct: 152 EQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQ 292
Score = 41.8 bits (85), Expect(4) = 1e-024
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +3 / +2
Query: 300 GPLVTVPRQGELVYYFPQGHMEQ 368
GPL+++P++G +V Y PQGH EQ
Sbjct: 89 GPLISLPKKGSIVVYVPQGHFEQ 157
Score = 23.5 bits (45), Expect(4) = 1e-024
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = +3 / +1
Query: 279 ELWHACA 299
ELWHACA
Sbjct: 67 ELWHACA 87
>gb|BE204967.1|BE204967 EST397643 KV0 Medicago truncatula cDNA clone pKV0-18N16, mRNA
sequence
Length = 562
Score = 62.5 bits (130), Expect(3) = 6e-024
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3 / +2
Query: 279 ELWHACAGPLVTVPRQGELVYYFPQGHMEQ 368
ELWHACAGPL+++P++G +V Y PQGH EQ
Sbjct: 209 ELWHACAGPLISLPKKGSIVVYVPQGHFEQ 298
Score = 51.5 bits (106), Expect(3) = 6e-024
Identities = 20/47 (42%), Positives = 31/47 (65%)
Frame = +3 / +2
Query: 384 DQQLDQHLPLFDLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+Q D + ++PP + C+V++V+L AE SDEVY Q++L PE Q
Sbjct: 293 EQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQ 433
Score = 35.4 bits (71), Expect(3) = 6e-024
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3 / +2
Query: 579 YSFCKTLTASDTSTH 623
+ FCKTLTASDTSTH
Sbjct: 518 HMFCKTLTASDTSTH 562
>gb|CX526282.1|CX526282 s13dNF34B12AT101_510308 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 630
Score = 111 bits (237), Expect = 1e-023
Identities = 40/52 (76%), Positives = 50/52 (96%)
Frame = +3 / +1
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQQLDQHLPLFDL 422
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q +QH+P++DL
Sbjct: 475 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDL 630
>gb|AW688973.1|AW688973 NF013H09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF013H09ST 5', mRNA sequence
Length = 487
Score = 95.5 bits (202), Expect(2) = 3e-022
Identities = 35/41 (85%), Positives = 41/41 (100%)
Frame = +3 / +2
Query: 267 ALFRELWHACAGPLVTVPRQGELVYYFPQGHMEQLEASTDQ 389
AL+RELWHACAGPLVTVPR+GELV+YFPQGH+EQ+EAST+Q
Sbjct: 314 ALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQ 436
Score = 30.9 bits (61), Expect(2) = 3e-022
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3 / +3
Query: 387 QQLDQHLPLFDLPPKIL 437
+ L+QH+P++DL PKIL
Sbjct: 435 KHLEQHMPVYDLRPKIL 485
>gb|BI308096.1|BI308096 EST529506 GPOD Medicago truncatula cDNA clone pGPOD-2I13 5' end,
mRNA sequence
Length = 844
Score = 68.4 bits (143), Expect(2) = 5e-022
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R +V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 164 RFHVHSFCKTLTASDTSTHGGFSVLRRHADE 256
Score = 57.0 bits (118), Expect(2) = 5e-022
Identities = 22/36 (61%), Positives = 30/36 (83%)
Frame = +3 / +2
Query: 417 DLPPKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
+L PKILC+V+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 11 NLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQ 118
>gb|CX526327.1|CX526327 s13dNF34F09AT079_510398 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 630
Score = 68.4 bits (143), Expect(2) = 1e-021
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +3 / +2
Query: 567 RCNVYSFCKTLTASDTSTHGGFSVLRRHAEE 659
R +V+SFCKTLTASDTSTHGGFSVLRRHA+E
Sbjct: 158 RFHVHSFCKTLTASDTSTHGGFSVLRRHADE 250
Score = 55.6 bits (115), Expect(2) = 1e-021
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +3 / +2
Query: 426 PKILCKVVNVELRAETDSDEVYAQIMLQPEADQ 524
PKILC+V+NV L+AE D+DEV+AQ+ L PE +Q
Sbjct: 14 PKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQ 112
>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence
Length = 142579
Score = 65.7 bits (137), Expect(3) = 2e-021
Identities = 21/33 (63%), Positives = 29/33 (87%)
Frame = +3 / +1
Query: 273 FRELWHACAGPLVTVPRQGELVYYFPQGHMEQL 371
+ ELWHACAGPL ++P++G +V YFPQGH+EQ+
Sbjct: 48718 YLELWHACAGPLTSLPKKGNVVVYFPQGHLEQV 48816
Score = 54.7 bits (113), Expect(3) = 2e-021
Identities = 22/27 (81%), Positives = 24/27 (88%)
Frame = +3 / +2
Query: 579 YSFCKTLTASDTSTHGGFSVLRRHAEE 659
+ FCKTLTASDTSTHGGFSV RR AE+
Sbjct: 49469 HMFCKTLTASDTSTHGGFSVPRRAAED 49549
Score = 38.6 bits (78), Expect(3) = 2e-021
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3 / +1
Query: 405 LPLFDLPPKILCKVVNVELRAETDSDEVYAQIML 506
+P + L P+ILC+VVNV+L T ++ +Y+ I L
Sbjct: 48847 IPTYGLQPQILCRVVNVQLLVST*TELLYSSIEL 48948
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 526,986,379
Number of Sequences: 392609
Number of extensions: 6061710
Number of successful extensions: 39028
Number of sequences better than 1.0e-020: 37
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20797168425
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)