TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750436.2.1
(656 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2... 162 6e-039
gb|CA921399.1|CA921399 EST639117 MTUS Medicago truncatula c... 159 5e-038
gb|CG973490.1|CG973490 MBEKJ65TF mth2 Medicago truncatula g... 131 1e-029
gb|AC175090.3| Medicago truncatula clone mth2-156c19, WORKI... 127 2e-028
gb|BF519709.1|BF519709 EST457173 DSIL Medicago truncatula c... 122 4e-027
gb|AW687606.2|AW687606 NF011D11RT1F1093 Developing root Med... 122 4e-027
gb|BE319936.2|BE319936 NF021D10RT1F1078 Developing root Med... 122 4e-027
gb|BE320472.2|BE320472 NF031B04RT1F1029 Developing root Med... 122 4e-027
gb|BE319809.2|BE319809 NF022C06RT1F1038 Developing root Med... 122 6e-027
gb|AL383572.1|AL383572 MtBC15C03F1 MtBC Medicago truncatula... 120 2e-026
gb|CA923127.1|CA923127 EST640845 MTUS Medicago truncatula c... 119 4e-026
emb|CR300646.1| mte1-19G21RM1 BAC end, cultivar Jemalong A1... 118 1e-025
emb|CR315137.1| mte1-39C6RM1 BAC end, cultivar Jemalong A17... 116 2e-025
emb|CR314565.1| mte1-38E22RM1 BAC end, cultivar Jemalong A1... 111 8e-024
gb|BE319553.2|BE319553 NF015A06RT1F1037 Developing root Med... 109 6e-023
gb|AW687013.2|AW687013 NF005A06RT1F1040 Developing root Med... 107 1e-022
gb|AL367521.1|AL367521 MtBA15E10F1 MtBA Medicago truncatula... 106 3e-022
>emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d5, COMPLETE SEQUENCE
Length = 89591
Score = 162 bits (348), Expect = 6e-039
Identities = 68/104 (65%), Positives = 82/104 (78%)
Frame = -1 / +3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE+IIS+ E LG A+ EHG+G VL V EIQ R DAA+E+E+SLLELHQ+FLDMAVM
Sbjct: 22977 IEKIISNGDDESFLGKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVM 23156
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGEK+DDIE HV +ASHYV+ G K L AK+YQ+SSRK +C
Sbjct: 23157 VEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMC 23288
>gb|CA921399.1|CA921399 EST639117 MTUS Medicago truncatula cDNA clone MTUS-39H3, mRNA
sequence
Length = 633
Score = 159 bits (341), Expect = 5e-038
Identities = 66/104 (63%), Positives = 81/104 (77%)
Frame = -1 / -2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE+I S+ E LG A+ +HG+G VL V EIQ R DAA+E+E+SLLELHQ+FLDMAVM
Sbjct: 599 IEKIFSNGDDESFLGKAIQDHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQIFLDMAVM 420
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGEK+DDIE HV +ASHYV+ G K L AK+YQ+SSRK +C
Sbjct: 419 VEAQGEKMDDIEHHVLHASHYVKDGTKNLHGAKQYQKSSRKWMC 288
>gb|CG973490.1|CG973490 MBEKJ65TF mth2 Medicago truncatula genomic clone 74K10, DNA
sequence
Length = 681
Score = 131 bits (280), Expect = 1e-029
Identities = 51/104 (49%), Positives = 78/104 (75%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E + A+ E G+G ++ + EIQ R DA +E+E++L+ELHQVFLDMA +
Sbjct: 232 IENLISSGESETFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAAL 411
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE+QG++L++IESHVA+AS +V+ G ++L +A+E+Q+ SRK C
Sbjct: 412 VESQGQQLNNIESHVAHASSFVRRGTEQLHEAREHQKDSRKWTC 543
>gb|AC175090.3| Medicago truncatula clone mth2-156c19, WORKING DRAFT SEQUENCE, 16
ordered pieces
Length = 138337
Score = 127 bits (272), Expect = 2e-028
Identities = 50/104 (48%), Positives = 77/104 (74%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E + A+ E G+G ++ + EIQ R DA +E+E++L+ELHQVFLDMA +
Sbjct: 91603 IENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMATL 91782
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE+QG++L++IESHVA+AS +V+ G ++L +A+ Q++SRK C
Sbjct: 91783 VESQGQQLNNIESHVAHASSFVRRGTEQLQEARVQQKNSRKWTC 91914
>gb|BF519709.1|BF519709 EST457173 DSIL Medicago truncatula cDNA clone pDSIL-21B11, mRNA
sequence
Length = 657
Score = 122 bits (262), Expect = 4e-027
Identities = 47/104 (45%), Positives = 76/104 (73%)
Frame = -1 / -2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ +IS E L A+ + G+ ++ + EIQ R D +E+ER+L+ELHQVF+DM+V+
Sbjct: 317 VDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVL 138
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V++QGE+LD+IESHVA A+ YV+GG ++L A+++Q ++RK C
Sbjct: 137 VQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQMNTRKWTC 6
>gb|AW687606.2|AW687606 NF011D11RT1F1093 Developing root Medicago truncatula cDNA clone
NF011D11RT 5', mRNA sequence
Length = 517
Score = 122 bits (262), Expect = 4e-027
Identities = 47/104 (45%), Positives = 76/104 (73%)
Frame = -1 / +3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ +IS E L A+ + G+ ++ + EIQ R D +E+ER+L+ELHQVF+DM+V+
Sbjct: 195 VDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVL 374
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V++QGE+LD+IESHVA A+ YV+GG ++L A+++Q ++RK C
Sbjct: 375 VQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQMNTRKWTC 506
>gb|BE319936.2|BE319936 NF021D10RT1F1078 Developing root Medicago truncatula cDNA clone
NF021D10RT 5', mRNA sequence
Length = 462
Score = 122 bits (262), Expect = 4e-027
Identities = 47/104 (45%), Positives = 76/104 (73%)
Frame = -1 / +1
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ +IS E L A+ + G+ ++ + EIQ R D +E+ER+L+ELHQVF+DM+V+
Sbjct: 85 VDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVL 264
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V++QGE+LD+IESHVA A+ YV+GG ++L A+++Q ++RK C
Sbjct: 265 VQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQMNTRKWTC 396
>gb|BE320472.2|BE320472 NF031B04RT1F1029 Developing root Medicago truncatula cDNA clone
NF031B04RT 5', mRNA sequence
Length = 531
Score = 122 bits (262), Expect = 4e-027
Identities = 47/104 (45%), Positives = 76/104 (73%)
Frame = -1 / +2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ +IS E L A+ + G+ ++ + EIQ R D +E+ER+L+ELHQVF+DM+V+
Sbjct: 125 VDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVL 304
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V++QGE+LD+IESHVA A+ YV+GG ++L A+++Q ++RK C
Sbjct: 305 VQSQGEQLDNIESHVARANSYVRGGVQQLHVARKHQMNTRKWTC 436
>gb|BE319809.2|BE319809 NF022C06RT1F1038 Developing root Medicago truncatula cDNA clone
NF022C06RT 5', mRNA sequence
Length = 493
Score = 122 bits (261), Expect = 6e-027
Identities = 51/104 (49%), Positives = 72/104 (69%)
Frame = -1 / +3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I E++ A+ E G+G V++ V EIQ R DA +E+E+ LL+LHQ++LDMAV+
Sbjct: 63 IDHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVL 242
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
VE QGE LD+IES V NA +VQ G L AK+ Q++SRK +C
Sbjct: 243 VEAQGEILDNIESQVNNAVDHVQRGTTALQSAKKLQKNSRKWMC 374
>gb|AL383572.1|AL383572 MtBC15C03F1 MtBC Medicago truncatula cDNA clone MtBC15C03 T3, mRNA
sequence
Length = 482
Score = 120 bits (257), Expect = 2e-026
Identities = 49/93 (52%), Positives = 68/93 (73%)
Frame = -1 / +3
Query: 626 EELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVMVETQGEKLDD 447
E++ A+ E G+G V++ V EIQ R DA +E+E+ LL+LH ++LDMAV+VE QGE LD+
Sbjct: 12 EQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHXIYLDMAVLVEAQGEILDN 191
Query: 446 IESHVANASHYVQGGNKELGKAKEYQRSSRKCL 348
IES VANA+ +V+ GN L AK Q+ SRKC+
Sbjct: 192 IESQVANATDHVKSGNDALHTAKSLQKKSRKCM 290
>gb|CA923127.1|CA923127 EST640845 MTUS Medicago truncatula cDNA clone MTUS-63D3, mRNA
sequence
Length = 769
Score = 119 bits (255), Expect = 4e-026
Identities = 50/104 (48%), Positives = 73/104 (70%)
Frame = -1 / -2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+R+I E++ A+ E G+G V+ + EIQ R +A R+VER LL+L Q F+D+AV+
Sbjct: 573 IDRLIETGDSEQIFQKAIQEQGRGQVMDTLAEIQERHEAVRDVERKLLDLQQTFMDIAVL 394
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSSRKCLC 345
V+ QG+ LD+IES V++A +VQ GN L KAK+ QR+SRK +C
Sbjct: 393 VDAQGDMLDNIESQVSSAVDHVQQGNNSLQKAKKMQRNSRKWMC 262
>emb|CR300646.1| mte1-19G21RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 650
Score = 118 bits (252), Expect = 1e-025
Identities = 46/98 (46%), Positives = 73/98 (74%)
Frame = -1 / -2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E + A+ E G+G ++ + EIQ R DA +E+E++L+ELHQVFLDMA +
Sbjct: 295 IENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMATL 116
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRS 363
VE+QG++L++IESHVA+AS +V+ G ++L +A+ Q++
Sbjct: 115 VESQGQQLNNIESHVAHASSFVRRGTEQLQEARVQQKN 2
>emb|CR315137.1| mte1-39C6RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 633
Score = 116 bits (249), Expect = 2e-025
Identities = 45/98 (45%), Positives = 73/98 (74%)
Frame = -1 / -3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E + A+ E G+G ++ + EIQ R DA +E+E++L+ELHQVFLDMA +
Sbjct: 295 IENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMATL 116
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRS 363
VE+QG++L++IESHVA+AS +V+ G +++ +A+ Q++
Sbjct: 115 VESQGQQLNNIESHVAHASSFVRRGTEQVQEARVQQKN 2
>emb|CR314565.1| mte1-38E22RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 580
Score = 111 bits (238), Expect = 8e-024
Identities = 43/88 (48%), Positives = 66/88 (75%)
Frame = -1 / -3
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
IE +IS E + A+ E G+G ++ + EIQ R DA +E+E++L+ELHQVFLDMA +
Sbjct: 296 IENLISSGESENFMQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMATL 117
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKE 393
VE+QG++L++IESHVA+AS +V+ G ++
Sbjct: 116 VESQGQQLNNIESHVAHASSFVRRGTEQ 33
>gb|BE319553.2|BE319553 NF015A06RT1F1037 Developing root Medicago truncatula cDNA clone
NF015A06RT 5', mRNA sequence
Length = 357
Score = 109 bits (232), Expect = 6e-023
Identities = 41/86 (47%), Positives = 64/86 (74%)
Frame = -1 / +2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
++ +IS E L A+ + G+ ++ + EIQ R D +E+ER+L+ELHQVF+DM+V+
Sbjct: 98 VDLLISTGESETFLQKAIQQQGRANIMDTIQEIQERHDTVKEIERNLMELHQVFMDMSVL 277
Query: 476 VETQGEKLDDIESHVANASHYVQGGN 399
V++QGE+LD+IESHVA A+ YV+GG+
Sbjct: 278 VQSQGEQLDNIESHVARANSYVKGGD 355
>gb|AW687013.2|AW687013 NF005A06RT1F1040 Developing root Medicago truncatula cDNA clone
NF005A06RT 5', mRNA sequence
Length = 772
Score = 107 bits (229), Expect = 1e-022
Identities = 46/94 (48%), Positives = 63/94 (67%)
Frame = -1 / +2
Query: 656 IERIISDDRGEELLGAAVAEHGKGAVLAAVHEIQXRRDAAREVERSLLELHQVFLDMAVM 477
I+ +I E++ A+ E G+G V++ V EIQ R DA +E+E+ LL+LHQ++LDMAV+
Sbjct: 467 IDHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVL 646
Query: 476 VETQGEKLDDIESHVANASHYVQGGNKELGKAKE 375
VE QGE LD+IES V NA +VQ G L K E
Sbjct: 647 VEAQGEILDNIESQVNNAVDHVQRGTTALSKC*E 748
>gb|AL367521.1|AL367521 MtBA15E10F1 MtBA Medicago truncatula cDNA clone MtBA15E10 T3, mRNA
sequence
Length = 507
Score = 106 bits (227), Expect = 3e-022
Identities = 43/65 (66%), Positives = 54/65 (83%)
Frame = -1 / -2
Query: 539 AREVERSLLELHQVFLDMAVMVETQGEKLDDIESHVANASHYVQGGNKELGKAKEYQRSS 360
A+E+E+S LE HQ+FLDMAVMVE QGEK+DDIE HV +ASHYV+ G K L +K+YQ+SS
Sbjct: 506 AKEIEKSSLERHQIFLDMAVMVEAQGEKMDDIEHHVLHASHYVKYGTKYLHGSKQYQKSS 327
Query: 359 RKCLC 345
RK +C
Sbjct: 326 RKWMC 312
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 425,979,912
Number of Sequences: 392609
Number of extensions: 4729165
Number of successful extensions: 28815
Number of sequences better than 1.0e-020: 19
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20671124980
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)