TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2646712.2.1
(581 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ165456.1|BQ165456 EST611325 KVKC Medicago truncatula c... 126 3e-028
gb|CX524693.1|CX524693 s13dNF10A05AT037_478020 Aphid-Infect... 126 3e-028
gb|CA920040.1|CA920040 EST637758 MTUS Medicago truncatula c... 124 1e-027
gb|BF648496.1|BF648496 NF046G12EC1F1099 Elicited cell cultu... 118 8e-026
gb|AW687196.2|AW687196 NF007A07RT1F1052 Developing root Med... 118 8e-026
gb|AL368787.1|AL368787 MtBA26G06F1 MtBA Medicago truncatula... 113 3e-024
gb|BE942405.1|BE942405 EST421984 MGHG Medicago truncatula c... 113 3e-024
gb|BQ153125.1|BQ153125 NF029H08IR1F1076 Irradiated Medicago... 113 3e-024
gb|BQ155548.1|BQ155548 NF081E10IR1F1083 Irradiated Medicago... 113 3e-024
gb|CA918868.1|CA918868 EST636586 MTUS Medicago truncatula c... 113 3e-024
gb|BE319580.2|BE319580 NF015D06RT1F1046 Developing root Med... 107 1e-022
gb|AC174319.2| Medicago truncatula clone mth2-179i3, WORKIN... 82 2e-021
>gb|BQ165456.1|BQ165456 EST611325 KVKC Medicago truncatula cDNA clone pKVKC-9C10, mRNA
sequence
Length = 776
Score = 126 bits (270), Expect = 3e-028
Identities = 50/79 (63%), Positives = 59/79 (74%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRYIC + LHR +VV L K FP YP+P +CSDE NPR +PYK SNQ+L++LGLEFT
Sbjct: 544 ASGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFT 365
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LYDTV QEKG L
Sbjct: 364 PVKQCLYDTVRSLQEKGHL 308
>gb|CX524693.1|CX524693 s13dNF10A05AT037_478020 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 567
Score = 126 bits (270), Expect = 3e-028
Identities = 50/79 (63%), Positives = 59/79 (74%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRYIC + LHR +VV L K FP YP+P +CSDE NPR +PYK SNQ+L++LGLEFT
Sbjct: 270 ASGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFT 449
Query: 398 PAAQALYDTVVCFQEKGIL 342
P Q LYDTV QEKG L
Sbjct: 450 PVKQCLYDTVRSLQEKGHL 506
>gb|CA920040.1|CA920040 EST637758 MTUS Medicago truncatula cDNA clone MTUS-22H11, mRNA
sequence
Length = 504
Score = 124 bits (266), Expect = 1e-027
Identities = 49/78 (62%), Positives = 58/78 (74%)
Frame = -1 / -1
Query: 575 AGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFTP 396
+GRYIC + LHR +VV L K FP YP+P +CSDE NPR +PYK SNQ+L++LGLEFTP
Sbjct: 504 SGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFTP 325
Query: 395 AAQALYDTVVCFQEKGIL 342
Q LYDTV QEKG L
Sbjct: 324 VKQCLYDTVRSLQEKGHL 271
>gb|BF648496.1|BF648496 NF046G12EC1F1099 Elicited cell culture Medicago truncatula cDNA
clone NF046G12EC 5', mRNA sequence
Length = 654
Score = 118 bits (252), Expect = 8e-026
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRYIC + LHR +VV L K FP YP+P +CSDE NPR +PYK SNQ+L++LGLEFT
Sbjct: 435 ASGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFT 614
Query: 398 PAAQALYDTV 369
P Q LYDTV
Sbjct: 615 PVKQCLYDTV 644
>gb|AW687196.2|AW687196 NF007A07RT1F1052 Developing root Medicago truncatula cDNA clone
NF007A07RT 5', mRNA sequence
Length = 449
Score = 118 bits (252), Expect = 8e-026
Identities = 45/70 (64%), Positives = 54/70 (77%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRYIC + LHR +VV L K FP YP+P +CSDE NPR +PYK SNQ+L++LGLEFT
Sbjct: 200 ASGRYICCETALHRGEVVEILAKYFPEYPLPTKCSDEKNPRVKPYKFSNQKLKDLGLEFT 379
Query: 398 PAAQALYDTV 369
P Q LYDTV
Sbjct: 380 PVKQCLYDTV 409
>gb|AL368787.1|AL368787 MtBA26G06F1 MtBA Medicago truncatula cDNA clone MtBA26G06 T3, mRNA
sequence
Length = 467
Score = 113 bits (241), Expect = 3e-024
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = -1 / +1
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ LHR ++V L K FP YP+P +CSDE NPR +P+ SN++L++LGLEFT
Sbjct: 166 ASGRYLCAETSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFT 345
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++ LY+TV Q++G L
Sbjct: 346 PVSECLYETVKSLQDQGHL 402
>gb|BE942405.1|BE942405 EST421984 MGHG Medicago truncatula cDNA clone pMGHG-8K20, mRNA
sequence
Length = 609
Score = 113 bits (241), Expect = 3e-024
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = -1 / +3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ LHR ++V L K FP YP+P +CSDE NPR +P+ SN++L++LGLEFT
Sbjct: 150 ASGRYLCAETSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFT 329
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++ LY+TV Q++G L
Sbjct: 330 PVSECLYETVKSLQDQGHL 386
>gb|BQ153125.1|BQ153125 NF029H08IR1F1076 Irradiated Medicago truncatula cDNA clone
NF029H08IR 5', mRNA sequence
Length = 636
Score = 113 bits (241), Expect = 3e-024
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ LHR ++V L K FP YP+P +CSDE NPR +P+ SN++L++LGLEFT
Sbjct: 275 ASGRYLCAETSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFT 454
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++ LY+TV Q++G L
Sbjct: 455 PVSECLYETVKSLQDQGHL 511
>gb|BQ155548.1|BQ155548 NF081E10IR1F1083 Irradiated Medicago truncatula cDNA clone
NF081E10IR 5', mRNA sequence
Length = 632
Score = 113 bits (241), Expect = 3e-024
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ LHR ++V L K FP YP+P +CSDE NPR +P+ SN++L++LGLEFT
Sbjct: 275 ASGRYLCAETSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFT 454
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++ LY+TV Q++G L
Sbjct: 455 PVSECLYETVKSLQDQGHL 511
>gb|CA918868.1|CA918868 EST636586 MTUS Medicago truncatula cDNA clone MTUS-5D7, mRNA
sequence
Length = 723
Score = 113 bits (241), Expect = 3e-024
Identities = 42/79 (53%), Positives = 60/79 (75%)
Frame = -1 / -3
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ LHR ++V L K FP YP+P +CSDE NPR +P+ SN++L++LGLEFT
Sbjct: 490 ASGRYLCAETSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFT 311
Query: 398 PAAQALYDTVVCFQEKGIL 342
P ++ LY+TV Q++G L
Sbjct: 310 PVSECLYETVKSLQDQGHL 254
>gb|BE319580.2|BE319580 NF015D06RT1F1046 Developing root Medicago truncatula cDNA clone
NF015D06RT 5', mRNA sequence
Length = 405
Score = 107 bits (229), Expect = 1e-022
Identities = 39/70 (55%), Positives = 55/70 (78%)
Frame = -1 / +2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPERCSDEVNPRKQPYKISNQRLRELGLEFT 399
A+GRY+CA+ LHR ++V L K FP YP+P +CSDE NPR +P+ SN++L++LGLEFT
Sbjct: 176 ASGRYLCAETSLHRGELVEILAKYFPEYPIPTKCSDEKNPRVKPHIFSNKKLKDLGLEFT 355
Query: 398 PAAQALYDTV 369
P ++ LY+TV
Sbjct: 356 PVSECLYETV 385
>gb|AC174319.2| Medicago truncatula clone mth2-179i3, WORKING DRAFT SEQUENCE, 5
unordered pieces
Length = 87930
Score = 82.2 bits (173), Expect(2) = 2e-021
Identities = 33/47 (70%), Positives = 37/47 (78%)
Frame = -1 / -3
Query: 482 RCSDEVNPRKQPYKISNQRLRELGLEFTPAAQALYDTVVCFQEKGIL 342
RCSDE NPR +PYK SNQ+L++LGLEFTP Q LYDTV QEKG L
Sbjct: 77839 RCSDEKNPRVKPYKFSNQKLKDLGLEFTPVKQCLYDTVRSLQEKGHL 77699
Score = 49.6 bits (102), Expect(2) = 2e-021
Identities = 18/33 (54%), Positives = 23/33 (69%)
Frame = -1 / -2
Query: 578 AAGRYICADAVLHREDVVRTLRKSFPGYPVPER 480
A+GRYIC + LHR +VV L K FP YP+P +
Sbjct: 80051 ASGRYICCETALHRGEVVEILAKYFPEYPLPTK 79953
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 454,763,366
Number of Sequences: 392609
Number of extensions: 5853081
Number of successful extensions: 40137
Number of sequences better than 1.0e-020: 13
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 17701047560
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)