TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2623051.2.1
(991 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DW016615.1|DW016615 EST1225576 MTY Medicago truncatula c... 147 7e-057
gb|AJ504258.1|AJ504258 AJ504258 MTAMP Medicago truncatula c... 143 1e-055
gb|BE204116.1|BE204116 EST396792 KV0 Medicago truncatula cD... 139 2e-054
gb|AW299016.1|AW299016 EST305690 KV2 Medicago truncatula cD... 147 2e-051
gb|BG453453.1|BG453453 NF094B06LF1F1046 Developing leaf Med... 122 2e-049
gb|DW015443.1|DW015443 EST1224404 MTY Medicago truncatula c... 122 1e-048
gb|BG644435.1|BG644435 EST506054 KV3 Medicago truncatula cD... 118 3e-048
gb|AW257443.1|AW257443 EST305580 KV2 Medicago truncatula cD... 95 1e-040
gb|BG457055.1|BG457055 NF069C04PL1F1024 Phosphate starved l... 117 2e-039
gb|BQ123662.1|BQ123662 EST609238 GLSD Medicago truncatula c... 117 2e-039
gb|AL389588.1|AL389588 MtBC55H09F1 MtBC Medicago truncatula... 115 1e-038
gb|AL385483.1|AL385483 MtBC28H01F1 MtBC Medicago truncatula... 147 7e-038
gb|BQ122948.1|BQ122948 EST608524 GLSD Medicago truncatula c... 117 1e-036
gb|AW257047.1|AW257047 EST305184 KV2 Medicago truncatula cD... 95 3e-033
gb|AC153125.10| Medicago truncatula clone mth2-74f16, compl... 60 6e-030
gb|BI271441.1|BI271441 NF051H12FL1F1104 Developing flower M... 95 8e-030
gb|AC174145.3| Medicago truncatula clone mth2-44m11, WORKIN... 60 4e-029
gb|AC126008.36| Medicago truncatula clone mth2-13e5, comple... 57 1e-027
gb|BI270332.1|BI270332 NF010A03FL1F1021 Developing flower M... 57 2e-027
gb|AC144404.34| Medicago truncatula clone mth2-19f21, WORKI... 57 1e-021
gb|AW171746.2|AW171746 N100640e rootphos(-) Medicago trunca... 103 4e-021
>gb|DW016615.1|DW016615 EST1225576 MTY Medicago truncatula cDNA clone MTYAJ48, mRNA
sequence
Length = 740
Score = 147 bits (316), Expect(2) = 7e-057
Identities = 56/79 (70%), Positives = 73/79 (92%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GAE
Sbjct: 500 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 679
Query: 516 EFFLKPVKPADMKKLKSHL 460
EFFLKPV+ +D+ +LK H+
Sbjct: 680 EFFLKPVRLSDLNRLKPHM 736
Score = 106 bits (226), Expect(2) = 2e-024
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = +2 / -3
Query: 470 LSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMPG 649
LS F S TGF+KNSSAPS KHLLI GTFSDD+ITTGM ++D+D +S+S PVMPG
Sbjct: 726 LSLFKSDNLTGFKKNSSAPSSKHLLILEGTFSDDIITTGMFLNDDDSLIFLSKS*PVMPG 547
Query: 650 MQ*SVMMRLTSIS* 691
+Q*SV+ R TS S*
Sbjct: 546 IQ*SVITRFTSTS* 505
Score = 95.5 bits (202), Expect(2) = 7e-057
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +2
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 314 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 460
Score = 27.6 bits (54), Expect(2) = 2e-024
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2 / -3
Query: 794 PESTVVTW*DEXXXXXXXXXXXXXXXXTARTWNRDSASSTVMA 922
PESTVVT +E TA+T N DSA+ + +
Sbjct: 423 PESTVVT*YEEVLRSLSISFLSMILSSTAKT*NCDSAAIPIFS 295
>gb|AJ504258.1|AJ504258 AJ504258 MTAMP Medicago truncatula cDNA clone mtgmadc120045d08,
mRNA sequence
Length = 626
Score = 143 bits (307), Expect(2) = 1e-055
Identities = 55/76 (72%), Positives = 71/76 (93%)
Frame = -2 / +1
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GAE
Sbjct: 349 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 528
Query: 516 EFFLKPVKPADMKKLK 469
EFFLKPV+ +D+ +LK
Sbjct: 529 EFFLKPVRLSDLNRLK 576
Score = 106 bits (226), Expect(2) = 2e-024
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = +2 / -1
Query: 470 LSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMPG 649
LS F S TGF+KNSSAPS KHLLI GTFSDD+ITTGM ++D+D +S+S PVMPG
Sbjct: 575 LSLFKSDNLTGFKKNSSAPSSKHLLILEGTFSDDIITTGMFLNDDDSLIFLSKS*PVMPG 396
Query: 650 MQ*SVMMRLTSIS* 691
+Q*SV+ R TS S*
Sbjct: 395 IQ*SVITRFTSTS* 354
Score = 95.5 bits (202), Expect(2) = 1e-055
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +1
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 163 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 309
Score = 27.6 bits (54), Expect(2) = 2e-024
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2 / -1
Query: 794 PESTVVTW*DEXXXXXXXXXXXXXXXXTARTWNRDSASSTVMA 922
PESTVVT +E TA+T N DSA+ + +
Sbjct: 272 PESTVVT*YEEVLRSLSISFLSMILSSTAKT*NCDSAAIPIFS 144
>gb|BE204116.1|BE204116 EST396792 KV0 Medicago truncatula cDNA clone pKV0-14F9, mRNA
sequence
Length = 649
Score = 139 bits (298), Expect(2) = 2e-054
Identities = 53/74 (71%), Positives = 69/74 (93%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GA+
Sbjct: 428 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAQ 607
Query: 516 EFFLKPVKPADMKK 475
EFFLKPVK +D+ +
Sbjct: 608 EFFLKPVKLSDLNR 649
Score = 100 bits (213), Expect(2) = 1e-022
Identities = 45/71 (63%), Positives = 54/71 (76%)
Frame = +2 / -2
Query: 479 FMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMPGMQ* 658
F S TGF+KNS APS KHLLI GTFSDD+ITTGM ++D+D +S+S PVMPG+Q*
Sbjct: 645 FKSDNLTGFKKNSCAPSSKHLLILEGTFSDDIITTGMFLNDDDSLIFLSKS*PVMPGIQ* 466
Query: 659 SVMMRLTSIS* 691
SV+ R TS S*
Sbjct: 465 SVITRFTSTS* 433
Score = 95.5 bits (202), Expect(2) = 2e-054
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +2
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 242 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 388
Score = 27.6 bits (54), Expect(2) = 1e-022
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2 / -2
Query: 794 PESTVVTW*DEXXXXXXXXXXXXXXXXTARTWNRDSASSTVMA 922
PESTVVT +E TA+T N DSA+ + +
Sbjct: 351 PESTVVT*YEEVLRSLSISFLSMILSSTAKT*NCDSAAIPIFS 223
>gb|AW299016.1|AW299016 EST305690 KV2 Medicago truncatula cDNA clone KV2-11A4, mRNA
sequence
Length = 723
Score = 147 bits (316), Expect(3) = 2e-051
Identities = 56/79 (70%), Positives = 73/79 (92%)
Frame = -2 / +3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GAE
Sbjct: 447 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 626
Query: 516 EFFLKPVKPADMKKLKSHL 460
EFFLKPV+ +D+ +LK H+
Sbjct: 627 EFFLKPVRLSDLNRLKPHM 683
Score = 106 bits (226), Expect = 6e-022
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = +2 / -3
Query: 470 LSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMPG 649
LS F S TGF+KNSSAPS KHLLI GTFSDD+ITTGM ++D+D +S+S PVMPG
Sbjct: 673 LSLFKSDNLTGFKKNSSAPSSKHLLILEGTFSDDIITTGMFLNDDDSLIFLSKS*PVMPG 494
Query: 650 MQ*SVMMRLTSIS* 691
+Q*SV+ R TS S*
Sbjct: 493 IQ*SVITRFTSTS* 452
Score = 69.8 bits (146), Expect(3) = 2e-051
Identities = 31/37 (83%), Positives = 34/37 (91%)
Frame = -2 / +3
Query: 867 SIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
SIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 297 SIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 407
Score = 25.8 bits (50), Expect(3) = 2e-051
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = -2 / +1
Query: 903 AESRFHVLAVD 871
AES+FHVLAVD
Sbjct: 262 AESQFHVLAVD 294
>gb|BG453453.1|BG453453 NF094B06LF1F1046 Developing leaf Medicago truncatula cDNA clone
NF094B06LF 5', mRNA sequence
Length = 665
Score = 122 bits (262), Expect(2) = 2e-049
Identities = 47/63 (74%), Positives = 59/63 (93%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GA
Sbjct: 476 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAX 655
Query: 516 EFF 508
EFF
Sbjct: 656 EFF 664
Score = 95.5 bits (202), Expect(2) = 2e-049
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +2
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 290 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 436
>gb|DW015443.1|DW015443 EST1224404 MTY Medicago truncatula cDNA clone MTYA521, mRNA
sequence
Length = 544
Score = 122 bits (260), Expect(2) = 1e-048
Identities = 46/63 (73%), Positives = 60/63 (95%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSE+VP+RI+RCL++GA+
Sbjct: 356 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSESVPSRINRCLEEGAQ 535
Query: 516 EFF 508
EFF
Sbjct: 536 EFF 544
Score = 93.6 bits (198), Expect(2) = 1e-048
Identities = 41/49 (83%), Positives = 46/49 (93%)
Frame = -2 / +2
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
A+S+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 170 AKSQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 316
>gb|BG644435.1|BG644435 EST506054 KV3 Medicago truncatula cDNA clone pKV3-37C20 5' end,
mRNA sequence
Length = 647
Score = 118 bits (253), Expect(2) = 3e-048
Identities = 46/61 (75%), Positives = 57/61 (93%)
Frame = -2 / +3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP RI+RCL++GAE
Sbjct: 465 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPFRINRCLEEGAE 644
Query: 516 E 514
E
Sbjct: 645 E 647
Score = 95.5 bits (202), Expect(2) = 3e-048
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +3
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 279 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 425
>gb|AW257443.1|AW257443 EST305580 KV2 Medicago truncatula cDNA clone KV2-9H4, mRNA sequence
Length = 614
Score = 95.5 bits (202), Expect(2) = 1e-040
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +2
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 278 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 424
Score = 93.2 bits (197), Expect(2) = 1e-040
Identities = 35/50 (70%), Positives = 45/50 (90%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPAR 547
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IP VIMSSE VP++
Sbjct: 464 NHQEVEVNLVITDYCMPGMTGYDLLNKIKESSSLRNIPAVIMSSEKVPSK 613
>gb|BG457055.1|BG457055 NF069C04PL1F1024 Phosphate starved leaf Medicago truncatula cDNA
clone NF069C04PL 5', mRNA sequence
Length = 654
Score = 117 bits (251), Expect(2) = 2e-039
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = -2 / +2
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
+ V L+ITDYCMPGMTGY+LL ++K S++ IPVVIMSSEN+ RI RCL++GAE+F +
Sbjct: 257 LKVDLVITDYCMPGMTGYELLKKIKESTTFRAIPVVIMSSENILPRIDRCLEEGAEDFIV 436
Query: 504 KPVKPADMKKLKSHL 460
KPVK +D+K+LK ++
Sbjct: 437 KPVKLSDVKRLKGYM 481
Score = 67.0 bits (140), Expect(2) = 2e-039
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2 / +2
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRD 760
HVLAVDDS++DRK+IE LLK S+ +VT VDSG +AL+ LGL D
Sbjct: 89 HVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLVD 217
>gb|BQ123662.1|BQ123662 EST609238 GLSD Medicago truncatula cDNA clone pGLSD-33A11, mRNA
sequence
Length = 628
Score = 117 bits (251), Expect(2) = 2e-039
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = -2 / +1
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
+ V L+ITDYCMPGMTGY+LL ++K S++ IPVVIMSSEN+ RI RCL++GAE+F +
Sbjct: 196 LKVDLVITDYCMPGMTGYELLKKIKESTTFRAIPVVIMSSENILPRIDRCLEEGAEDFIV 375
Query: 504 KPVKPADMKKLKSHL 460
KPVK +D+K+LK ++
Sbjct: 376 KPVKLSDVKRLKGYM 420
Score = 67.0 bits (140), Expect(2) = 2e-039
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRD 760
HVLAVDDS++DRK+IE LLK S+ +VT VDSG +AL+ LGL D
Sbjct: 28 HVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLVD 156
>gb|AL389588.1|AL389588 MtBC55H09F1 MtBC Medicago truncatula cDNA clone MtBC55H09 T3, mRNA
sequence
Length = 490
Score = 115 bits (245), Expect(2) = 1e-038
Identities = 44/75 (58%), Positives = 61/75 (81%)
Frame = -2 / +1
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
+ V L+ITDYCMPGMTGY+ L ++K S++ IPVVIMSSEN+ RI RCL++GAE+F +
Sbjct: 259 LKVDLVITDYCMPGMTGYESLKKIKESTTFRAIPVVIMSSENILPRIDRCLEEGAEDFIV 438
Query: 504 KPVKPADMKKLKSHL 460
KPVK +D+K+LK ++
Sbjct: 439 KPVKLSDVKRLKGYM 483
Score = 67.0 bits (140), Expect(2) = 1e-038
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2 / +1
Query: 888 HVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRD 760
HVLAVDDS++DRK+IE LLK S+ +VT VDSG +AL+ LGL D
Sbjct: 91 HVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLVD 219
>gb|AL385483.1|AL385483 MtBC28H01F1 MtBC Medicago truncatula cDNA clone MtBC28H01 T3, mRNA
sequence
Length = 436
Score = 147 bits (316), Expect(2) = 7e-038
Identities = 56/79 (70%), Positives = 73/79 (92%)
Frame = -2 / +3
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAE 517
+HQE++V+L+ITDYCMPGMTGYDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GAE
Sbjct: 93 NHQEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAE 272
Query: 516 EFFLKPVKPADMKKLKSHL 460
EFFLKPV+ +D+ +LK H+
Sbjct: 273 EFFLKPVRLSDLNRLKPHM 329
Score = 106 bits (226), Expect = 6e-022
Identities = 48/74 (64%), Positives = 57/74 (77%)
Frame = +2 / -1
Query: 470 LSFFMSAGFTGFRKNSSAPSCKHLLIRAGTFSDDMITTGMSVSDEDPFTRVSRSYPVMPG 649
LS F S TGF+KNSSAPS KHLLI GTFSDD+ITTGM ++D+D +S+S PVMPG
Sbjct: 319 LSLFKSDNLTGFKKNSSAPSSKHLLILEGTFSDDIITTGMFLNDDDSLIFLSKS*PVMPG 140
Query: 650 MQ*SVMMRLTSIS* 691
+Q*SV+ R TS S*
Sbjct: 139 IQ*SVITRFTSTS* 98
Score = 31.8 bits (63), Expect(2) = 7e-038
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = -2 / +3
Query: 807 TVDSGNKALELLGLRDN 757
TVDSG+KALE LGL +N
Sbjct: 3 TVDSGSKALEFLGLCEN 53
>gb|BQ122948.1|BQ122948 EST608524 GLSD Medicago truncatula cDNA clone pGLSD-30N3, mRNA
sequence
Length = 688
Score = 117 bits (251), Expect(2) = 1e-036
Identities = 45/75 (60%), Positives = 62/75 (82%)
Frame = -2 / +1
Query: 684 IDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFL 505
+ V L+ITDYCMPGMTGY+LL ++K S++ IPVVIMSSEN+ RI RCL++GAE+F +
Sbjct: 154 LKVDLVITDYCMPGMTGYELLKKIKESTTFRAIPVVIMSSENILPRIDRCLEEGAEDFIV 333
Query: 504 KPVKPADMKKLKSHL 460
KPVK +D+K+LK ++
Sbjct: 334 KPVKLSDVKRLKGYM 378
Score = 57.4 bits (119), Expect(2) = 1e-036
Identities = 25/38 (65%), Positives = 31/38 (81%)
Frame = -2 / +1
Query: 873 DDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRD 760
DDS++DRK+IE LLK SS +VT VDSG +AL+ LGL D
Sbjct: 1 DDSLVDRKVIERLLKISSCKVTAVDSGIRALQFLGLVD 114
>gb|AW257047.1|AW257047 EST305184 KV2 Medicago truncatula cDNA clone KV2-6D12, mRNA
sequence
Length = 573
Score = 95.5 bits (202), Expect(2) = 3e-033
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +2
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 275 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 421
Score = 68.4 bits (143), Expect(2) = 3e-033
Identities = 25/37 (67%), Positives = 33/37 (89%)
Frame = -2 / +2
Query: 696 DHQEIDVSLIITDYCMPGMTGYDLLTRVKGSSSLTDI 586
+H E++V+L+ITDYCMPGMTGYDLL ++K SSSL +I
Sbjct: 461 NHXEVEVNLVITDYCMPGMTGYDLLKKIKESSSLRNI 571
>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence
Length = 128458
Score = 59.7 bits (124), Expect(5) = 6e-030
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -2 / -2
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
Q++DV+LIITDYCMPGMTGYDLL ++K
Sbjct: 88650 QDVDVNLIITDYCMPGMTGYDLLRKIK 88570
Score = 55.1 bits (114), Expect(5) = 6e-030
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = -2 / -1
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVT 808
AE++FHVLAVDDSIIDR LIE LLK+SS+ T
Sbjct: 89077 AENQFHVLAVDDSIIDRMLIERLLKTSSFNGT 88982
Score = 52.8 bits (109), Expect(5) = 6e-030
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = -2 / -3
Query: 540 RCLQDGAEEFFLKPVKPADMKKLKSHLL 457
RCL++GAEEFFLKPV+ +D+ KLK HLL
Sbjct: 87992 RCLEEGAEEFFLKPVQLSDVSKLKPHLL 87909
Score = 42.8 bits (87), Expect(5) = 6e-030
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -2 / -3
Query: 606 SSSLTDIPVVIMSSENVPARISR 538
S S DIPVVIMSSENVP+RI+R
Sbjct: 88238 SKSFKDIPVVIMSSENVPSRINR 88170
Score = 29.0 bits (57), Expect(5) = 6e-030
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / -1
Query: 813 VTTVDSGNKALELLGL 766
VTTVDS +KAL+ LGL
Sbjct: 88840 VTTVDSASKALKFLGL 88793
>gb|BI271441.1|BI271441 NF051H12FL1F1104 Developing flower Medicago truncatula cDNA clone
NF051H12FL 5', mRNA sequence
Length = 648
Score = 95.5 bits (202), Expect(2) = 8e-030
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = -2 / +1
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVDSGNKALELLGLRDN 757
AES+FHVLAVDDSIIDRKLIE LLK+SSYQVTTVDSG+KALE LGL +N
Sbjct: 391 AESQFHVLAVDDSIIDRKLIERLLKTSSYQVTTVDSGSKALEFLGLCEN 537
Score = 57.0 bits (118), Expect(2) = 8e-030
Identities = 19/24 (79%), Positives = 24/24 (100%)
Frame = -2 / +1
Query: 696 DHQEIDVSLIITDYCMPGMTGYDL 625
+HQE++V+L+ITDYCMPGMTGYDL
Sbjct: 577 NHQEVEVNLVITDYCMPGMTGYDL 648
>gb|AC174145.3| Medicago truncatula clone mth2-44m11, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 215052
Score = 59.7 bits (124), Expect(5) = 4e-029
Identities = 21/27 (77%), Positives = 26/27 (96%)
Frame = -2 / -1
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
Q++DV+LIITDYCMPGMTGYDLL ++K
Sbjct: 88650 QDVDVNLIITDYCMPGMTGYDLLRKIK 88570
Score = 55.1 bits (114), Expect(5) = 4e-029
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = -2 / -3
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVT 808
AE++FHVLAVDDSIIDR LIE LLK+SS+ T
Sbjct: 89077 AENQFHVLAVDDSIIDRMLIERLLKTSSFNGT 88982
Score = 52.8 bits (109), Expect(5) = 4e-029
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = -2 / -2
Query: 540 RCLQDGAEEFFLKPVKPADMKKLKSHLL 457
RCL++GAEEFFLKPV+ +D+ KLK HLL
Sbjct: 87992 RCLEEGAEEFFLKPVQLSDVSKLKPHLL 87909
Score = 42.8 bits (87), Expect(5) = 4e-029
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -2 / -2
Query: 606 SSSLTDIPVVIMSSENVPARISR 538
S S DIPVVIMSSENVP+RI+R
Sbjct: 88238 SKSFKDIPVVIMSSENVPSRINR 88170
Score = 29.0 bits (57), Expect(5) = 4e-029
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / -3
Query: 813 VTTVDSGNKALELLGL 766
VTTVDS +KAL+ LGL
Sbjct: 88840 VTTVDSASKALKFLGL 88793
>gb|AC126008.36| Medicago truncatula clone mth2-13e5, complete sequence
Length = 124889
Score = 57.4 bits (119), Expect(5) = 1e-027
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -2 / +1
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVK 610
Q++DV+LII DYCMPGMTGYDLL ++K
Sbjct: 75907 QDVDVNLIIADYCMPGMTGYDLLRKIK 75987
Score = 55.1 bits (114), Expect(5) = 1e-027
Identities = 24/32 (75%), Positives = 28/32 (87%)
Frame = -2 / +3
Query: 903 AESRFHVLAVDDSIIDRKLIEMLLKSSSYQVT 808
AE++FHVLAVDDSIIDR LIE LLK+SS+ T
Sbjct: 75459 AETQFHVLAVDDSIIDRMLIERLLKTSSFHGT 75554
Score = 50.6 bits (104), Expect(5) = 1e-027
Identities = 18/28 (64%), Positives = 24/28 (85%)
Frame = -2 / +1
Query: 540 RCLQDGAEEFFLKPVKPADMKKLKSHLL 457
+C ++GAEEFFLKPV+ +D+ KLK HLL
Sbjct: 76939 KCFEEGAEEFFLKPVQQSDVNKLKPHLL 77022
Score = 39.1 bits (79), Expect(5) = 1e-027
Identities = 17/24 (70%), Positives = 19/24 (79%)
Frame = -2 / +3
Query: 609 GSSSLTDIPVVIMSSENVPARISR 538
G + DIPVVIMSSENV +RISR
Sbjct: 76707 GIQTFKDIPVVIMSSENVSSRISR 76778
Score = 29.0 bits (57), Expect(5) = 1e-027
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -2 / +1
Query: 813 VTTVDSGNKALELLGLRDNGAED 745
VTT+DS +KAL+ LGL ++ A +
Sbjct: 75736 VTTMDSASKALKFLGLVEDVASE 75804
>gb|BI270332.1|BI270332 NF010A03FL1F1021 Developing flower Medicago truncatula cDNA clone
NF010A03FL 5', mRNA sequence
Length = 556
Score = 57.4 bits (119), Expect(4) = 2e-027
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = -2 / +2
Query: 678 VSLIITDYCMPGMTGYDLLTRVKGSS 601
V+LI+TDYCMPGM+GYDLL RVKGSS
Sbjct: 278 VNLIMTDYCMPGMSGYDLLKRVKGSS 355
Score = 47.8 bits (98), Expect(4) = 2e-027
Identities = 18/23 (78%), Positives = 22/23 (95%)
Frame = -2 / +3
Query: 579 VIMSSENVPARISRCLQDGAEEF 511
V+MSSENVP+RIS CL++GAEEF
Sbjct: 375 VVMSSENVPSRISMCLEEGAEEF 443
Score = 40.9 bits (83), Expect(4) = 2e-027
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = -2 / +2
Query: 849 LIEMLLKSSSYQVTTVDSGNKALELLGL 766
L+E LL+ SS +VT VDSG+KAL+ LGL
Sbjct: 101 LLERLLRDSSCKVTCVDSGDKALKYLGL 184
Score = 33.1 bits (66), Expect(4) = 2e-027
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = -2 / +1
Query: 900 ESRFHVLAVDDSIIDR 853
+ FHVLAVDDS+IDR
Sbjct: 49 QEHFHVLAVDDSVIDR 96
>gb|AC144404.34| Medicago truncatula clone mth2-19f21, WORKING DRAFT SEQUENCE, 14
unordered pieces
Length = 268915
Score = 57.0 bits (118), Expect(4) = 1e-021
Identities = 21/30 (70%), Positives = 27/30 (90%)
Frame = -2 / +2
Query: 690 QEIDVSLIITDYCMPGMTGYDLLTRVKGSS 601
Q ++V+LIITDYCMPGMTGYDLL ++K +S
Sbjct: 228605 QVVEVNLIITDYCMPGMTGYDLLRKIKVNS 228694
Score = 53.8 bits (111), Expect(4) = 1e-021
Identities = 20/28 (71%), Positives = 25/28 (89%)
Frame = -2 / +2
Query: 540 RCLQDGAEEFFLKPVKPADMKKLKSHLL 457
RCL++GAEEFFLKPV+ +D+ KLK HLL
Sbjct: 229337 RCLEEGAEEFFLKPVQQSDVNKLKPHLL 229420
Score = 49.6 bits (102), Expect(4) = 1e-021
Identities = 20/27 (74%), Positives = 25/27 (92%)
Frame = -2 / +3
Query: 897 SRFHVLAVDDSIIDRKLIEMLLKSSSY 817
++FHVLAVDDS+IDR LIE LLK+SS+
Sbjct: 227829 AQFHVLAVDDSVIDRMLIERLLKTSSF 227909
Score = 29.0 bits (57), Expect(4) = 1e-021
Identities = 12/16 (75%), Positives = 13/16 (81%)
Frame = -2 / +2
Query: 813 VTTVDSGNKALELLGL 766
VT VDSG KAL+ LGL
Sbjct: 228386 VTVVDSGTKALKFLGL 228433
>gb|AW171746.2|AW171746 N100640e rootphos(-) Medicago truncatula cDNA clone MHRP-9E1, mRNA
sequence
Length = 548
Score = 103 bits (220), Expect = 4e-021
Identities = 41/60 (68%), Positives = 53/60 (88%)
Frame = -2 / +3
Query: 639 TGYDLLTRVKGSSSLTDIPVVIMSSENVPARISRCLQDGAEEFFLKPVKPADMKKLKSHL 460
T YDLL ++K SSSL +IPVVIMSSENVP+RI+RCL++GAEEFFLKPV+ +D+ +LK H+
Sbjct: 3 TSYDLLKKIKESSSLRNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVRLSDLNRLKPHM 182
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 610,632,841
Number of Sequences: 392609
Number of extensions: 5973472
Number of successful extensions: 26672
Number of sequences better than 1.0e-020: 28
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 34428329064
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)