TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2622915.2.1
(584 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW560211.1|AW560211 EST315251 DSIR Medicago truncatula c... 140 1e-032
gb|AJ497568.1|AJ497568 AJ497568 MTFLOW Medicago truncatula ... 140 1e-032
gb|CA920379.1|CA920379 EST638097 MTUS Medicago truncatula c... 139 4e-032
gb|AC146723.24| Medicago truncatula clone mth2-34n4, WORKIN... 78 1e-027
gb|AC126785.11| Medicago truncatula clone mth2-9i24, comple... 77 1e-027
gb|BG449670.1|BG449670 NF055F06IN1F1057 Insect herbivory Me... 110 1e-026
gb|CX541254.1|CX541254 s13dNF26D05GS046_465804 Germinating ... 104 1e-021
>gb|AW560211.1|AW560211 EST315251 DSIR Medicago truncatula cDNA clone pDSIR-26M4, mRNA
sequence
Length = 656
Score = 140 bits (301), Expect = 1e-032
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = -3 / -2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMD 409
LWMVLRVL+TVEAH GY FPWSPSNFLPLYGGSDFHDYHHR+LYTKSGNY+STF YMD
Sbjct: 469 LWMVLRVLETVEAHCGYHFPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFTYMD 296
>gb|AJ497568.1|AJ497568 AJ497568 MTFLOW Medicago truncatula cDNA clone mt--abc955111a03,
mRNA sequence
Length = 495
Score = 140 bits (301), Expect = 1e-032
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = -3 / +1
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMD 409
LWMVLRVL+TVEAH GY FPWSPSNFLPLYGGSDFHDYHHR+LYTKSGNY+STF YMD
Sbjct: 181 LWMVLRVLETVEAHCGYHFPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFTYMD 354
>gb|CA920379.1|CA920379 EST638097 MTUS Medicago truncatula cDNA clone MTUS-27E3, mRNA
sequence
Length = 680
Score = 139 bits (298), Expect = 4e-032
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = -3 / -2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMD 409
LWMV+RVL+TVEAH GY FPWSPSNFLPLYGGSDFHDYHHR+LYTKSGNY+STF YMD
Sbjct: 388 LWMVVRVLETVEAHCGYHFPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFTYMD 215
>gb|AC146723.24| Medicago truncatula clone mth2-34n4, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 121085
Score = 78.0 bits (164), Expect(2) = 1e-027
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
LWMVLRVL+TVEAH GY FPWSPSNFLPLYGG
Sbjct: 85781 LWMVLRVLETVEAHCGYHFPWSPSNFLPLYGG 85876
Score = 66.1 bits (138), Expect(2) = 1e-027
Identities = 25/30 (83%), Positives = 27/30 (90%)
Frame = -3 / +2
Query: 486 SDFHDYHHRVLYTKSGNYASTFVYMDW*GF 397
SDFHDYHHR+LYTKSGNY+STF YMD * F
Sbjct: 85976 SDFHDYHHRLLYTKSGNYSSTFTYMDR*VF 86065
>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
Length = 132702
Score = 76.7 bits (161), Expect(2) = 1e-027
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = -3 / +2
Query: 582 LWMVLRVLKTVEAHTGYXFPWSPSNFLPLYGG 487
LWMV+RVL+TVEAH GY FPWSPSNFLPLYGG
Sbjct: 104036 LWMVVRVLETVEAHCGYHFPWSPSNFLPLYGG 104131
Score = 67.0 bits (140), Expect(2) = 1e-027
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = -3 / +2
Query: 501 PLYGGSDFHDYHHRVLYTKSGNYASTFVYMD 409
P + SDFHDYHHR+LYTKSGNY+STF YMD
Sbjct: 104216 PQFFRSDFHDYHHRLLYTKSGNYSSTFTYMD 104308
>gb|BG449670.1|BG449670 NF055F06IN1F1057 Insect herbivory Medicago truncatula cDNA clone
NF055F06IN 5', mRNA sequence
Length = 664
Score = 110 bits (234), Expect(2) = 1e-026
Identities = 39/43 (90%), Positives = 41/43 (95%)
Frame = -3 / -1
Query: 537 GYXFPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMD 409
GY FPWSPSNFLPLYGGSDFHDYHHR+LYTKSGNY+STF YMD
Sbjct: 523 GYHFPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFTYMD 395
Score = 30.4 bits (60), Expect(2) = 1e-026
Identities = 13/19 (68%), Positives = 15/19 (78%)
Frame = -3 / -3
Query: 582 LWMVLRVLKTVEAHTGYXF 526
L MV+RVL+TVEAH G F
Sbjct: 569 LXMVVRVLETVEAHCGLPF 513
>gb|CX541254.1|CX541254 s13dNF26D05GS046_465804 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 479
Score = 104 bits (222), Expect = 1e-021
Identities = 37/40 (92%), Positives = 39/40 (97%)
Frame = -3 / +1
Query: 528 FPWSPSNFLPLYGGSDFHDYHHRVLYTKSGNYASTFVYMD 409
FPWSPSNFLPLYGGSDFHDYHHR+LYTKSGNY+STF YMD
Sbjct: 4 FPWSPSNFLPLYGGSDFHDYHHRLLYTKSGNYSSTFTYMD 123
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 538,740,717
Number of Sequences: 392609
Number of extensions: 6736416
Number of successful extensions: 40493
Number of sequences better than 1.0e-020: 9
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 17827483614
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)