TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448720.2.1
(510 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE239778.1|BE239778 EST403827 MHRP- Medicago truncatula ... 103 2e-021
gb|AL369527.1|AL369527 MtBA31F08F1 MtBA Medicago truncatula... 101 6e-021
gb|AL382871.1|AL382871 MtBC10D12F1 MtBC Medicago truncatula... 101 6e-021
gb|BQ148467.1|BQ148467 NF068F08FL1F1075 Developing flower M... 101 6e-021
>gb|BE239778.1|BE239778 EST403827 MHRP- Medicago truncatula cDNA clone pMHRP-38E6, mRNA
sequence
Length = 524
Score = 103 bits (219), Expect = 2e-021
Identities = 43/73 (58%), Positives = 51/73 (69%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVGVWNLR E LD WY GQE Y+KV +P N TE+ +PDNAL CG L+ QKP
Sbjct: 112 VLVSLDNVGVWNLRTENLDSWYLGQETYIKVVNPEPTNKTELPMPDNALKCGRLQHLQKP 291
Query: 183 QVHESNSKSSAQG 221
Q S++ + G
Sbjct: 292 QKIISSASINGNG 330
>gb|AL369527.1|AL369527 MtBA31F08F1 MtBA Medicago truncatula cDNA clone MtBA31F08 T3, mRNA
sequence
Length = 369
Score = 101 bits (216), Expect = 6e-021
Identities = 42/73 (57%), Positives = 51/73 (69%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVGVWNLR E LD WY GQE Y++V +P N TE+ +PDNAL CG L+ QKP
Sbjct: 151 VLVSLDNVGVWNLRTENLDSWYLGQETYIRVVNPEPTNKTELPMPDNALKCGRLQHLQKP 330
Query: 183 QVHESNSKSSAQG 221
Q S++ + G
Sbjct: 331 QKIISSASINGNG 369
>gb|AL382871.1|AL382871 MtBC10D12F1 MtBC Medicago truncatula cDNA clone MtBC10D12 T3, mRNA
sequence
Length = 489
Score = 101 bits (216), Expect = 6e-021
Identities = 42/73 (57%), Positives = 51/73 (69%)
Frame = +3 / +2
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVGVWNLR E LD WY GQE Y++V +P N TE+ +PDNAL CG L+ QKP
Sbjct: 83 VLVSLDNVGVWNLRTENLDSWYLGQETYIRVVNPEPTNKTELPMPDNALKCGRLQHLQKP 262
Query: 183 QVHESNSKSSAQG 221
Q S++ + G
Sbjct: 263 QKIISSASINGNG 301
>gb|BQ148467.1|BQ148467 NF068F08FL1F1075 Developing flower Medicago truncatula cDNA clone
NF068F08FL 5', mRNA sequence
Length = 635
Score = 101 bits (216), Expect = 6e-021
Identities = 42/73 (57%), Positives = 51/73 (69%)
Frame = +3 / +1
Query: 3 VLVSLDNVGVWNLRAERLDDWYRGQEVYVKVADPLGYNITEMVVPDNALYCGLLKERQKP 182
VLVSLDNVGVWNLR E LD WY GQE Y++V +P N TE+ +PDNAL CG L+ QKP
Sbjct: 64 VLVSLDNVGVWNLRTENLDSWYLGQETYIRVVNPEPTNKTELPMPDNALKCGRLQHLQKP 243
Query: 183 QVHESNSKSSAQG 221
Q S++ + G
Sbjct: 244 QKIISSASINGNG 282
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 474,897,044
Number of Sequences: 392609
Number of extensions: 5852149
Number of successful extensions: 53952
Number of sequences better than 1.0e-020: 5
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 14666582264
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)