TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2448489.2.1
(677 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR342640.1| mte1-75O10RM1 BAC end, cultivar Jemalong A1... 204 2e-051
gb|CG962262.1|CG962262 MBEEP40TRB mth2 Medicago truncatula ... 186 4e-046
gb|CA920561.1|CA920561 EST638279 MTUS Medicago truncatula c... 184 1e-045
gb|BG647806.1|BG647806 EST509425 HOGA Medicago truncatula c... 174 1e-042
gb|BE202431.1|BE202431 EST392880 KV1 Medicago truncatula cD... 151 1e-035
gb|AL368953.1|AL368953 MtBA27H12R1 MtBA Medicago truncatula... 147 1e-034
emb|CR301430.1| mte1-2C20FM1 BAC end, cultivar Jemalong A17... 141 9e-033
gb|BE202442.1|BE202442 EST392891 KV1 Medicago truncatula cD... 136 4e-031
>emb|CR342640.1| mte1-75O10RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 364
Score = 204 bits (439), Expect = 2e-051
Identities = 76/105 (72%), Positives = 87/105 (82%)
Frame = -2 / +1
Query: 619 NSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSME 440
NS+Y HG+WA VD+Y MME + GLGDERWPFVTHFVGCKPCGSYGDYPVERCL SME
Sbjct: 1 NSFYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVERCLSSME 180
Query: 439 RAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
RAFNFADNQVL+LYGF H+GL SPKIKR R++T P+ V+ D+
Sbjct: 181 RAFNFADNQVLKLYGFRHRGLLSPKIKRIRNETITPLEFVDQFDI 315
Score = 104 bits (222), Expect = 1e-021
Identities = 54/77 (70%), Positives = 54/77 (70%)
Frame = +3 / -3
Query: 387 CEKPYSRSTWLSAKLNARSMLLRQRSTG*SP*LPHGLHPTK*VTKGHRSSPRPXW*FSII 566
C P S ST LSAKL A SMLLR STG*SP*LP GLHPTK VTKGH SSP P FSII
Sbjct: 233 CLNP*SLST*LSAKLKALSMLLRHLSTG*SP*LPQGLHPTKCVTKGHLSSPSPG*YFSII 54
Query: 567 XSYLSTXXAQKPCX**E 617
SY ST AQ PC * E
Sbjct: 53 SSYRSTNPAQ*PCK*KE 3
>gb|CG962262.1|CG962262 MBEEP40TRB mth2 Medicago truncatula genomic clone 39H8, DNA
sequence
Length = 911
Score = 186 bits (400), Expect = 4e-046
Identities = 63/110 (57%), Positives = 85/110 (77%)
Frame = -2 / +1
Query: 634 KVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERC 455
KV++EN YY HG+W VD+Y M+EN+ G GD RWP VTHFVGCKPCG +GDYPVERC
Sbjct: 367 KVYLENGYYLHGYWGILVDRYEEMIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERC 546
Query: 454 LRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
L+ M+RAFNF DNQ+L++YGF+HK L S +++R R++T+ P+ + L +
Sbjct: 547 LKQMDRAFNFGDNQILQIYGFTHKSLVSRRVRRIRNETSNPLEVKDELGL 696
>gb|CA920561.1|CA920561 EST638279 MTUS Medicago truncatula cDNA clone MTUS-29G1, mRNA
sequence
Length = 647
Score = 184 bits (396), Expect = 1e-045
Identities = 62/110 (56%), Positives = 86/110 (78%)
Frame = -2 / -2
Query: 634 KVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERC 455
KV++EN YY HG+W VD+Y M+EN+ G GD RWP VTHFVGCKPCG +GDYPVERC
Sbjct: 628 KVYLENHYYLHGYWGILVDRYEEMIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERC 449
Query: 454 LRSMERAFNFADNQVLRLYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
L+ M+RA+NF DNQ+L++YGF+HK L S ++KR R++++ P++ + L +
Sbjct: 448 LKQMDRAYNFGDNQILQMYGFTHKSLASRRVKRVRNESSNPLDVKDELGL 299
>gb|BG647806.1|BG647806 EST509425 HOGA Medicago truncatula cDNA clone pHOGA-17P10 5' end,
mRNA sequence
Length = 470
Score = 174 bits (375), Expect = 1e-042
Identities = 59/93 (63%), Positives = 75/93 (80%)
Frame = -2 / +2
Query: 634 KVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERC 455
KV++EN YY HG+W VD+Y M+EN+ G GD RWP VTHFVGCKPCG +GDYPVERC
Sbjct: 188 KVYLENHYYLHGYWGILVDRYEEMIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERC 367
Query: 454 LRSMERAFNFADNQVLRLYGFSHKGLESPKIKR 356
L+ M+RA+NF DNQ+L++YGF+HK L S ++KR
Sbjct: 368 LKQMDRAYNFGDNQILQMYGFTHKSLASRRVKR 466
>gb|BE202431.1|BE202431 EST392880 KV1 Medicago truncatula cDNA clone pKV1-2K11, mRNA
sequence
Length = 573
Score = 151 bits (324), Expect = 1e-035
Identities = 52/93 (55%), Positives = 73/93 (78%)
Frame = -2 / +2
Query: 583 VDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLR 404
VD+Y M+EN+ G D RWP VTHFVGCKPCG +GDYPVERCL+ M+RA+NF DNQ+L+
Sbjct: 2 VDRYEEMIENYHPGFCDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQ 181
Query: 403 LYGFSHKGLESPKIKRFRDQTTRPINDVENLDM 305
+YGF+HK L S ++KR R++++ P++ + L +
Sbjct: 182 MYGFTHKSLASRRVKRVRNESSNPLDVKDELGL 280
>gb|AL368953.1|AL368953 MtBA27H12R1 MtBA Medicago truncatula cDNA clone MtBA27H12 T7, mRNA
sequence
Length = 519
Score = 147 bits (316), Expect = 1e-034
Identities = 50/87 (57%), Positives = 70/87 (80%)
Frame = -2 / +3
Query: 565 MMENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSH 386
M+EN+ G GD RWP VTHFVGCKPCG +GDYPVERCL+ M+RA+NF DNQ+L++YGF+H
Sbjct: 9 MIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTH 188
Query: 385 KGLESPKIKRFRDQTTRPINDVENLDM 305
K L S ++KR R++++ P++ + L +
Sbjct: 189 KSLASRRVKRVRNESSNPLDVKDELGL 269
>emb|CR301430.1| mte1-2C20FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 412
Score = 141 bits (303), Expect = 9e-033
Identities = 52/72 (72%), Positives = 58/72 (80%)
Frame = -2 / +1
Query: 661 LSQXDXXXXKVFIENSYYXHGFWAXXVDKYXXMMENHXXGLGDERWPFVTHFVGCKPCGS 482
LS+ D KVF+ENS+Y HG+WA VD+Y MME + GLGDERWPFVTHFVGCKPCGS
Sbjct: 196 LSKKDKWMEKVFLENSFYLHGYWAGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGS 375
Query: 481 YGDYPVERCLRS 446
YGDYPVERCL S
Sbjct: 376 YGDYPVERCLSS 411
>gb|BE202442.1|BE202442 EST392891 KV1 Medicago truncatula cDNA clone pKV1-2K23, mRNA
sequence
Length = 551
Score = 136 bits (291), Expect = 4e-031
Identities = 47/86 (54%), Positives = 67/86 (77%)
Frame = -2 / +1
Query: 562 MENHXXGLGDERWPFVTHFVGCKPCGSYGDYPVERCLRSMERAFNFADNQVLRLYGFSHK 383
+EN+ G GD RW VT FVGCKPCG +GDYPVERCL+ M+RA+NF DNQ+L++YGF+HK
Sbjct: 1 IENYHPGFGDHRWFLVTDFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHK 180
Query: 382 GLESPKIKRFRDQTTRPINDVENLDM 305
L S ++KR R++++ P++ + L +
Sbjct: 181 SLASRRVKRVRNESSNPLDVKDELGL 258
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 564,127,206
Number of Sequences: 392609
Number of extensions: 6664824
Number of successful extensions: 36651
Number of sequences better than 1.0e-020: 8
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 21553429095
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)