TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441100.2.1
(646 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381349.1|AL381349 MtBC019E03R1 MtBC Medicago truncatul... 132 5e-030
gb|AL386203.1|AL386203 MtBC33B12F1 MtBC Medicago truncatula... 132 5e-030
gb|AW696699.2|AW696699 NF109H05ST1F1047 Developing stem Med... 132 5e-030
gb|BG453426.1|BG453426 NF096D10LF1F1079 Developing leaf Med... 132 5e-030
gb|CB891142.1|CB891142 EST648111 KV3 Medicago truncatula cD... 132 5e-030
gb|CX534988.1|CX534988 s13dNF28A09MJ069_388159 Methyl Jasmo... 132 5e-030
gb|AL377539.1|AL377539 MtBB32C08F1 MtBB Medicago truncatula... 123 2e-027
gb|AC161863.20| Medicago truncatula clone mth2-175f4, compl... 123 2e-027
gb|BH759703.1|BH759703 Mt_H2_029A04_f MtH2 Medicago truncat... 119 4e-026
emb|CR489370.1| mth2-159L18FM1 BAC end, cultivar Jemalong A... 119 4e-026
gb|CG946601.1|CG946601 MBEEE26TR mth2 Medicago truncatula g... 115 9e-025
gb|AC154036.7| Medicago truncatula clone mth2-123c24, WORKI... 113 2e-024
gb|BG646934.1|BG646934 EST508553 HOGA Medicago truncatula c... 81 3e-023
gb|BF519331.1|BF519331 EST456793 DSIL Medicago truncatula c... 107 1e-022
gb|CG930553.1|CG930553 MBEFJ50TF mth2 Medicago truncatula g... 107 2e-022
gb|CG969565.1|CG969565 MBECV02TF mth2 Medicago truncatula g... 107 2e-022
gb|BG647065.1|BG647065 EST508684 HOGA Medicago truncatula c... 105 7e-022
gb|CG930669.1|CG930669 MBEKK04TR mth2 Medicago truncatula g... 105 9e-022
>gb|AL381349.1|AL381349 MtBC019E03R1 MtBC Medicago truncatula cDNA clone MtBC019E0 T7, mRNA
sequence
Length = 549
Score = 132 bits (283), Expect = 5e-030
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +3 / +3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQK
Sbjct: 150 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKT 329
Query: 189 HPNGYGPA* 215
PNGYG +*
Sbjct: 330 RPNGYGSS* 356
>gb|AL386203.1|AL386203 MtBC33B12F1 MtBC Medicago truncatula cDNA clone MtBC33B12 T3, mRNA
sequence
Length = 497
Score = 132 bits (283), Expect = 5e-030
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +3 / -3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQK
Sbjct: 429 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKT 250
Query: 189 HPNGYGPA* 215
PNGYG +*
Sbjct: 249 RPNGYGSS* 223
>gb|AW696699.2|AW696699 NF109H05ST1F1047 Developing stem Medicago truncatula cDNA clone
NF109H05ST 5', mRNA sequence
Length = 550
Score = 132 bits (283), Expect = 5e-030
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +3 / -3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQK
Sbjct: 419 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKT 240
Query: 189 HPNGYGPA* 215
PNGYG +*
Sbjct: 239 RPNGYGSS* 213
>gb|BG453426.1|BG453426 NF096D10LF1F1079 Developing leaf Medicago truncatula cDNA clone
NF096D10LF 5', mRNA sequence
Length = 458
Score = 132 bits (283), Expect = 5e-030
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQK
Sbjct: 62 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKT 241
Query: 189 HPNGYGPA* 215
PNGYG +*
Sbjct: 242 RPNGYGSS* 268
>gb|CB891142.1|CB891142 EST648111 KV3 Medicago truncatula cDNA clone KV3-49E16, mRNA
sequence
Length = 711
Score = 132 bits (283), Expect = 5e-030
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +3 / -2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQK
Sbjct: 353 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKT 174
Query: 189 HPNGYGPA* 215
PNGYG +*
Sbjct: 173 RPNGYGSS* 147
>gb|CX534988.1|CX534988 s13dNF28A09MJ069_388159 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 641
Score = 132 bits (283), Expect = 5e-030
Identities = 51/69 (73%), Positives = 57/69 (82%)
Frame = +3 / -2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQK
Sbjct: 376 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKT 197
Query: 189 HPNGYGPA* 215
PNGYG +*
Sbjct: 196 RPNGYGSS* 170
>gb|AL377539.1|AL377539 MtBB32C08F1 MtBB Medicago truncatula cDNA clone MtBB32C08 T3, mRNA
sequence
Length = 477
Score = 123 bits (264), Expect = 2e-027
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3 / +2
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACKKATG +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+
Sbjct: 83 VEACKKATGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKS 262
Query: 189 HPNGYG 206
H +GYG
Sbjct: 263 HHDGYG 280
>gb|AC161863.20| Medicago truncatula clone mth2-175f4, complete sequence
Length = 116075
Score = 123 bits (264), Expect = 2e-027
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3 / -1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKA 188
VEACKKATG +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+
Sbjct: 17633 VEACKKATGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKS 17454
Query: 189 HPNGYG 206
H +GYG
Sbjct: 17453 HHDGYG 17436
>gb|BH759703.1|BH759703 Mt_H2_029A04_f MtH2 Medicago truncatula BAC library Medicago
truncatula genomic clone Mt_H2_029A04, DNA sequence
Length = 686
Score = 119 bits (255), Expect = 4e-026
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +3 / +2
Query: 15 ACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHP 194
ACKKATG +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+H
Sbjct: 2 ACKKATGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHH 181
Query: 195 NGYG 206
+GYG
Sbjct: 182 DGYG 193
>emb|CR489370.1| mth2-159L18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 661
Score = 119 bits (255), Expect = 4e-026
Identities = 45/64 (70%), Positives = 55/64 (85%)
Frame = +3 / +2
Query: 15 ACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHP 194
ACKKATG +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+H
Sbjct: 2 ACKKATGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHH 181
Query: 195 NGYG 206
+GYG
Sbjct: 182 DGYG 193
>gb|CG946601.1|CG946601 MBEEE26TR mth2 Medicago truncatula genomic clone 37E3, DNA sequence
Length = 851
Score = 115 bits (245), Expect = 9e-025
Identities = 44/58 (75%), Positives = 49/58 (84%)
Frame = +3 / +3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQ 182
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWKWQ
Sbjct: 678 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQ 851
>gb|AC154036.7| Medicago truncatula clone mth2-123c24, WORKING DRAFT SEQUENCE, 3
ordered pieces
Length = 101068
Score = 113 bits (242), Expect = 2e-024
Identities = 43/62 (69%), Positives = 53/62 (85%)
Frame = +3 / +2
Query: 21 KKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHPNG 200
KKATG +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+H +G
Sbjct: 2 KKATGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHHDG 181
Query: 201 YG 206
YG
Sbjct: 182 YG 187
>gb|BG646934.1|BG646934 EST508553 HOGA Medicago truncatula cDNA clone pHOGA-15O23 5' end,
mRNA sequence
Length = 775
Score = 81.3 bits (171), Expect(2) = 3e-023
Identities = 30/41 (73%), Positives = 33/41 (80%)
Frame = +3 / +3
Query: 84 EVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHPNGYG 206
EVYSDP+KI ELNWTAQYTDL +S+ AWKWQK PNG G
Sbjct: 594 EVYSDPTKIRRELNWTAQYTDLEKSIQVAWKWQKTRPNGIG 716
Score = 48.3 bits (99), Expect(2) = 3e-023
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +3 / +1
Query: 9 VEACKKATGASIKVEYLARRPGDY 80
V ACKKATG IKV++L RRPGDY
Sbjct: 520 VSACKKATGVDIKVDFLPRRPGDY 591
>gb|BF519331.1|BF519331 EST456793 DSIL Medicago truncatula cDNA clone pDSIL-20K16, mRNA
sequence
Length = 498
Score = 107 bits (229), Expect = 1e-022
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = +3 / +3
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWK 176
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AWK
Sbjct: 330 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAWK 497
>gb|CG930553.1|CG930553 MBEFJ50TF mth2 Medicago truncatula genomic clone 44I4, DNA sequence
Length = 847
Score = 107 bits (228), Expect = 2e-022
Identities = 40/62 (64%), Positives = 51/62 (82%)
Frame = +3 / +3
Query: 21 KKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHPNG 200
K+ G +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+H +G
Sbjct: 9 KRLLGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHHDG 188
Query: 201 YG 206
YG
Sbjct: 189 YG 194
>gb|CG969565.1|CG969565 MBECV02TF mth2 Medicago truncatula genomic clone 29A4, DNA sequence
Length = 824
Score = 107 bits (228), Expect = 2e-022
Identities = 40/62 (64%), Positives = 51/62 (82%)
Frame = +3 / +3
Query: 21 KKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHPNG 200
K+ G +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+H +G
Sbjct: 9 KRLLGVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHHDG 188
Query: 201 YG 206
YG
Sbjct: 189 YG 194
>gb|BG647065.1|BG647065 EST508684 HOGA Medicago truncatula cDNA clone pHOGA-15H17 5' end,
mRNA sequence
Length = 713
Score = 105 bits (224), Expect = 7e-022
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = +3 / +1
Query: 9 VEACKKATGASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAW 173
V ACKKATG IKV++L RRPGDYAEVYSDP+KI ELNWTAQYTDL +S+ AW
Sbjct: 547 VSACKKATGVDIKVDFLPRRPGDYAEVYSDPTKIRRELNWTAQYTDLEKSIQVAW 711
>gb|CG930669.1|CG930669 MBEKK04TR mth2 Medicago truncatula genomic clone 74B7, DNA sequence
Length = 893
Score = 105 bits (223), Expect = 9e-022
Identities = 39/58 (67%), Positives = 49/58 (84%)
Frame = +3 / +1
Query: 33 GASIKVEYLARRPGDYAEVYSDPSKIHMELNWTAQYTDLGQSLAQAWKWQKAHPNGYG 206
G +IKVE+L RRPGDYAEVYSDP+KI+ EL W+AQ T+L +SL AW+WQK+H +GYG
Sbjct: 10 GVNIKVEFLPRRPGDYAEVYSDPTKINRELKWSAQRTNLEESLRTAWRWQKSHHDGYG 183
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 634,682,425
Number of Sequences: 392609
Number of extensions: 9522200
Number of successful extensions: 50112
Number of sequences better than 1.0e-020: 21
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 20166951200
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)