TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440419.2.1
(616 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG455171.1|BG455171 NF068B07PL1F1059 Phosphate starved l... 144 4e-059
emb|CR965650.1| mth4-5B9FM1 BAC end, cultivar Jemalong A17 ... 145 1e-057
emb|Y15295.1|MTY15295 Medicago truncatula mRNA for L-ascorb... 138 4e-057
gb|BG582674.1|BG582674 EST484419 GVN Medicago truncatula cD... 142 2e-055
gb|CA920648.1|CA920648 EST638366 MTUS Medicago truncatula c... 108 6e-045
gb|BG648482.1|BG648482 EST510101 HOGA Medicago truncatula c... 94 3e-040
gb|AJ503615.1|AJ503615 AJ503615 MTAMP Medicago truncatula c... 94 1e-039
gb|AL378391.1|AL378391 MtBB37H05R1 MtBB Medicago truncatula... 144 9e-034
gb|AL377724.1|AL377724 MtBB33D10R1 MtBB Medicago truncatula... 142 6e-033
gb|BF649970.1|BF649970 NF082C02EC1F1008 Elicited cell cultu... 94 2e-024
gb|AW287906.2|AW287906 N100750e rootphos(-) Medicago trunca... 104 1e-021
>gb|BG455171.1|BG455171 NF068B07PL1F1059 Phosphate starved leaf Medicago truncatula cDNA
clone NF068B07PL 5', mRNA sequence
Length = 636
Score = 144 bits (310), Expect(2) = 4e-059
Identities = 56/70 (80%), Positives = 58/70 (82%)
Frame = -3 / +3
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL PLRNTAVIFPYGWT LRF ADNPGVWAFHCHIEPHLHMGMGVIFAEAV V +P
Sbjct: 354 NLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIP 533
Query: 161 NEAVSCGAXA 132
EA+ CGA A
Sbjct: 534 KEALKCGATA 563
Score = 104 bits (222), Expect(2) = 4e-059
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = -3 / +3
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
E F +YD+ P NPNTT G+ VY N VDV+LQNAN L+ N SE+HPWHLHGHDF
Sbjct: 117 ERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDF 296
Query: 401 WVL 393
WVL
Sbjct: 297 WVL 305
>emb|CR965650.1| mth4-5B9FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 755
Score = 145 bits (311), Expect(2) = 1e-057
Identities = 55/74 (74%), Positives = 60/74 (81%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL PLRNT V+FPYGWT LRF ADNPGVWAFHCHIEPHLHMGMGVIFAE V + KVP
Sbjct: 532 NLTRAPLRNTVVVFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEGVHKIRKVP 353
Query: 161 NEAVSCGAXATALM 120
EA++CGA A L+
Sbjct: 352 TEALTCGATAKMLL 311
Score = 99.1 bits (210), Expect(2) = 1e-057
Identities = 36/59 (61%), Positives = 44/59 (74%)
Frame = -3 / -2
Query: 569 REYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
++YD+ P NPNTT G+ VY+ + VDV+LQNAN L N SE+HPWHLHGHDFWVL
Sbjct: 754 KDYDIFKNPVNPNTTTGNGVYMFNKDEIVDVILQNANQLHGNGSEIHPWHLHGHDFWVL 578
>emb|Y15295.1|MTY15295 Medicago truncatula mRNA for L-ascorbate oxidase
Length = 2058
Score = 138 bits (296), Expect(2) = 4e-057
Identities = 53/66 (80%), Positives = 55/66 (83%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL PLRNTAVIFPYGWT LRF ADNPGVWAFHCHIEPHLHMGMGVIFAEAV V +P
Sbjct: 1529 NLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIP 1708
Query: 161 NEAVSC 144
EA+ C
Sbjct: 1709 KEALKC 1726
Score = 104 bits (222), Expect(2) = 4e-057
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = -3 / +2
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
E F +YD+ P NPNTT G+ VY N VDV+LQNAN L+ N SE+HPWHLHGHDF
Sbjct: 1292 ERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDF 1471
Query: 401 WVL 393
WVL
Sbjct: 1472 WVL 1480
>gb|BG582674.1|BG582674 EST484419 GVN Medicago truncatula cDNA clone pGVN-70I4 5' end, mRNA
sequence
Length = 716
Score = 142 bits (304), Expect(2) = 2e-055
Identities = 55/70 (78%), Positives = 57/70 (81%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL PLRNTAVIFPYGW LRF ADNPGVWAFHCHIEPHLHMGMGVIFAEAV V +P
Sbjct: 203 NLTRAPLRNTAVIFPYGWIALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIP 382
Query: 161 NEAVSCGAXA 132
EA+ CGA A
Sbjct: 383 KEALKCGATA 412
Score = 95.5 bits (202), Expect(2) = 2e-055
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = -3 / +2
Query: 545 PPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
P NPNTT G+ VY N VDV+LQNAN L+ N SE+HPWHLHGHDFWVL
Sbjct: 2 PVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDFWVL 154
>gb|CA920648.1|CA920648 EST638366 MTUS Medicago truncatula cDNA clone MTUS-30F10, mRNA
sequence
Length = 684
Score = 108 bits (231), Expect(2) = 6e-045
Identities = 37/67 (55%), Positives = 50/67 (74%)
Frame = -3 / -2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL +P ++NT + +GWT LRF +DNPGVWAFHCHIE H +MGMGV+F E ++ V K+P
Sbjct: 311 NLVNPIMKNTVPVHSFGWTALRFRSDNPGVWAFHCHIESHFYMGMGVVFEEGIERVGKLP 132
Query: 161 NEAVSCG 141
+ + CG
Sbjct: 131 SSIMGCG 111
Score = 93.6 bits (198), Expect(2) = 6e-045
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = -3 / -2
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ N N T+ + +Y L NTTVD++LQNAN +++N SE HPWHLHGHDFWVL
Sbjct: 530 YDIFSVANNTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVL 360
>gb|BG648482.1|BG648482 EST510101 HOGA Medicago truncatula cDNA clone pHOGA-19N2 5' end,
mRNA sequence
Length = 766
Score = 93.6 bits (198), Expect(2) = 3e-040
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = -3 / +3
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ N N T+ + +Y L NTTVD++LQNAN +++N SE HPWHLHGHDFWVL
Sbjct: 342 YDIFSVANNTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVL 512
Score = 92.7 bits (196), Expect(2) = 3e-040
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = -3 / +1
Query: 332 DPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEA 153
+P ++NT + +GWT LRF +DNPGVWAFHCHIE H +MGMGV+F E + V + +
Sbjct: 571 NPIMKNTVPVHSFGWTALRFRSDNPGVWAFHCHIESHFYMGMGVVFEERLKGVGSYLHPS 750
Query: 152 VSCG 141
CG
Sbjct: 751 WGCG 762
>gb|AJ503615.1|AJ503615 AJ503615 MTAMP Medicago truncatula cDNA clone mtgmadc120036b05,
mRNA sequence
Length = 366
Score = 93.6 bits (198), Expect(2) = 1e-039
Identities = 32/53 (60%), Positives = 41/53 (77%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAV 183
NL +P ++NT + +GWT LRF +DNPGVWAFHCHIE H +MGMGV+F E +
Sbjct: 206 NLVNPIMKNTVPVHSFGWTALRFRSDNPGVWAFHCHIESHFYMGMGVVFEEGI 364
Score = 90.4 bits (191), Expect(2) = 1e-039
Identities = 31/49 (63%), Positives = 39/49 (79%)
Frame = -3 / +2
Query: 539 NPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
N N T+ + +Y L NTTVD++LQNAN +++N SE HPWHLHGHDFWVL
Sbjct: 11 NTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVL 157
>gb|AL378391.1|AL378391 MtBB37H05R1 MtBB Medicago truncatula cDNA clone MtBB37H05 T7, mRNA
sequence
Length = 550
Score = 144 bits (310), Expect = 9e-034
Identities = 56/70 (80%), Positives = 58/70 (82%)
Frame = -3 / +2
Query: 341 NLRDPPLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVP 162
NL PLRNTAVIFPYGWT LRF ADNPGVWAFHCHIEPHLHMGMGVIFAEAV V +P
Sbjct: 32 NLTRAPLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIP 211
Query: 161 NEAVSCGAXA 132
EA+ CGA A
Sbjct: 212 KEALKCGATA 241
>gb|AL377724.1|AL377724 MtBB33D10R1 MtBB Medicago truncatula cDNA clone MtBB33D10 T7, mRNA
sequence
Length = 526
Score = 142 bits (304), Expect = 6e-033
Identities = 54/65 (83%), Positives = 56/65 (86%)
Frame = -3 / +1
Query: 326 PLRNTAVIFPYGWTMLRFVADNPGVWAFHCHIEPHLHMGMGVIFAEAVDLVAKVPNEAVS 147
PLRNTAVIFPYGWT LRF ADNPGVWAFHCHIEPHLHMGMGVIFAEAV V +P EA+
Sbjct: 13 PLRNTAVIFPYGWTALRFKADNPGVWAFHCHIEPHLHMGMGVIFAEAVHKVRNIPKEALK 192
Query: 146 CGAXA 132
CGA A
Sbjct: 193 CGATA 207
>gb|BF649970.1|BF649970 NF082C02EC1F1008 Elicited cell culture Medicago truncatula cDNA
clone NF082C02EC 5', mRNA sequence
Length = 496
Score = 93.6 bits (198), Expect(2) = 2e-024
Identities = 33/57 (57%), Positives = 42/57 (73%)
Frame = -3 / +1
Query: 563 YDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDFWVL 393
YD+ N N T+ + +Y L NTTVD++LQNAN +++N SE HPWHLHGHDFWVL
Sbjct: 175 YDIFSVANNTNATSSNGIYRLKFNTTVDIILQNANTMNKNNSETHPWHLHGHDFWVL 345
Score = 39.6 bits (80), Expect(2) = 2e-024
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3 / +2
Query: 338 LRDPPLRNTAVIFPYGWTMLRFVADNPGVWAF 243
L +P + NT + +GWT LRF +DNPG F
Sbjct: 398 LVNPIMXNTVPVHSFGWTALRFRSDNPGGLGF 493
>gb|AW287906.2|AW287906 N100750e rootphos(-) Medicago truncatula cDNA clone MHRP-10H7, mRNA
sequence
Length = 364
Score = 104 bits (222), Expect = 1e-021
Identities = 39/63 (61%), Positives = 45/63 (71%)
Frame = -3 / +3
Query: 581 ETFSREYDVTLPPPNPNTTAGDNVYVLAHNTTVDVLLQNANALSRNVSEVHPWHLHGHDF 402
E F +YD+ P NPNTT G+ VY N VDV+LQNAN L+ N SE+HPWHLHGHDF
Sbjct: 159 ERFPMDYDIFKNPVNPNTTTGNGVYTFQLNEVVDVILQNANQLNGNGSEIHPWHLHGHDF 338
Query: 401 WVL 393
WVL
Sbjct: 339 WVL 347
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 363,963,392
Number of Sequences: 392609
Number of extensions: 3595064
Number of successful extensions: 29096
Number of sequences better than 1.0e-020: 12
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 19091844154
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)