TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440015.2.1
(608 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI310627.1|BI310627 EST5312377 GESD Medicago truncatula ... 161 7e-039
gb|AJ501762.1|AJ501762 AJ501762 MTAMP Medicago truncatula c... 161 7e-039
gb|AL378329.1|AL378329 MtBB37E05F1 MtBB Medicago truncatula... 154 1e-036
>gb|BI310627.1|BI310627 EST5312377 GESD Medicago truncatula cDNA clone pGESD8J1 5' end,
mRNA sequence
Length = 492
Score = 161 bits (347), Expect = 7e-039
Identities = 65/73 (89%), Positives = 67/73 (91%)
Frame = -3 / +3
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLD LQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 27 KMIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 206
Query: 330 LNYNTLEKTETS* 292
LNYNT+EK E S*
Sbjct: 207 LNYNTMEKAEAS* 245
>gb|AJ501762.1|AJ501762 AJ501762 MTAMP Medicago truncatula cDNA clone mtgmadc120011e11,
mRNA sequence
Length = 452
Score = 161 bits (347), Expect = 7e-039
Identities = 65/73 (89%), Positives = 67/73 (91%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVRCFTCGKVIGNKWD YLD LQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 113 KMIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 292
Query: 330 LNYNTLEKTETS* 292
LNYNT+EK E S*
Sbjct: 293 LNYNTMEKAEAS* 331
>gb|AL378329.1|AL378329 MtBB37E05F1 MtBB Medicago truncatula cDNA clone MtBB37E05 T3, mRNA
sequence
Length = 434
Score = 154 bits (331), Expect = 1e-036
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3 / +2
Query: 510 KMIIPVRCFTCGKVIGNKWDLYLDLLQADYSEGDALDALELFRYCCRRMLMTHVDLIEKL 331
KMIIPVR FTCGKVIGNKWD YLD LQADY+EGDALDAL L RYCCRRMLMTHVDLIEKL
Sbjct: 26 KMIIPVRWFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKL 205
Query: 330 LNYNTLEKTETS* 292
LNYNT+EK E +*
Sbjct: 206 LNYNTMEKHEAN* 244
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 534,434,851
Number of Sequences: 392609
Number of extensions: 6516290
Number of successful extensions: 48024
Number of sequences better than 1.0e-020: 3
length of database: 147,244,331
effective HSP length: 53
effective length of database: 126,436,054
effective search space used: 18838972046
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)