TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2188214.2.1
(880 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG452084.1|BG452084 NF084E03LF1F1023 Developing leaf Med... 84 1e-030
gb|BG450408.1|BG450408 NF014E01DT1F1006 Drought Medicago tr... 84 1e-030
gb|BE943506.1|BE943506 EST423085 MGHG Medicago truncatula c... 84 2e-030
gb|AW560247.1|AW560247 EST315295 DSIR Medicago truncatula c... 81 9e-030
gb|AJ621857.1|AJ621857 AJ621857 Medicago truncatula J5 root... 81 9e-030
gb|BG453707.1|BG453707 NF100E09LF1F1068 Developing leaf Med... 81 2e-028
gb|BG450835.1|BG450835 NF093G02DT1F1018 Drought Medicago tr... 79 3e-028
gb|AW329404.2|AW329404 N200637e rootphos(-) Medicago trunca... 74 2e-026
gb|CA920186.1|CA920186 EST637904 MTUS Medicago truncatula c... 67 3e-024
gb|CA991198.1|CA991198 EST644706 GESD Medicago truncatula c... 65 1e-021
gb|BQ157463.1|BQ157463 NF105B07IR1F1061 Irradiated Medicago... 65 1e-021
gb|CA989726.1|CA989726 EST643234 GLSD Medicago truncatula c... 65 1e-021
gb|AL379975.1|AL379975 MtBB48E09F1 MtBB Medicago truncatula... 65 1e-021
>gb|BG452084.1|BG452084 NF084E03LF1F1023 Developing leaf Medicago truncatula cDNA clone
NF084E03LF 5', mRNA sequence
Length = 618
Score = 84.5 bits (178), Expect(2) = 1e-030
Identities = 31/53 (58%), Positives = 35/53 (66%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ N V PC HTIH CL QF CPLCSKSVCDMSK WE+LDME++
Sbjct: 126 ESRNDVIVMPCGHTIHKSCLNEMREHFQFTCPLCSKSVCDMSKVWEKLDMEIS 284
Score = 70.3 bits (147), Expect(2) = 1e-030
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1 / +3
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+V+FH +A KC NC SYNTRQ
Sbjct: 273 MEISATPMPEPYQNKMVWILCNDCGKTSNVRFHFVAQKCLNCNSYNTRQ 419
>gb|BG450408.1|BG450408 NF014E01DT1F1006 Drought Medicago truncatula cDNA clone NF014E01DT
5', mRNA sequence
Length = 594
Score = 84.5 bits (178), Expect(2) = 1e-030
Identities = 31/53 (58%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ N V PC HTIH CL QF CPLCSKSVCDMSK WE+LDME++
Sbjct: 83 ESRNDVIVMPCGHTIHKSCLNEMREHFQFTCPLCSKSVCDMSKVWEKLDMEIS 241
Score = 70.3 bits (147), Expect(2) = 1e-030
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1 / +2
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+V+FH +A KC NC SYNTRQ
Sbjct: 230 MEISATPMPEPYQNKMVWILCNDCGKTSNVRFHFVAQKCLNCNSYNTRQ 376
>gb|BE943506.1|BE943506 EST423085 MGHG Medicago truncatula cDNA clone pMGHG-15P14, mRNA
sequence
Length = 459
Score = 84.0 bits (177), Expect(2) = 2e-030
Identities = 31/50 (62%), Positives = 34/50 (68%)
Frame = -1 / +1
Query: 862 NXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
N V PC HTIH CL QF CPLCSKSVCDMSK WE+LDME++
Sbjct: 7 NDVIVMPCGHTIHKSCLNEMREHFQFTCPLCSKSVCDMSKVWEKLDMEIS 156
Score = 70.3 bits (147), Expect(2) = 2e-030
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = -1 / +1
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG S+V+FH +A KC NC SYNTRQ
Sbjct: 145 MEISATPMPEPYQNKMVWILCNDCGKTSNVRFHFVAQKCLNCNSYNTRQ 291
>gb|AW560247.1|AW560247 EST315295 DSIR Medicago truncatula cDNA clone pDSIR-26F15, mRNA
sequence
Length = 629
Score = 81.3 bits (171), Expect(2) = 9e-030
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = -1 / -3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ N V C HTIH CL Q+ACPLCSKSVCDMSK WE++D+ELA
Sbjct: 621 ESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELA 463
Score = 70.7 bits (148), Expect(2) = 9e-030
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = -1 / -3
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
L++ + + +K V ILCNDCG S VQFHL+A KC NCKSYNTRQ
Sbjct: 474 LELAATPMPEPYLNKTVWILCNDCGENSHVQFHLVAQKCLNCKSYNTRQ 328
>gb|AJ621857.1|AJ621857 AJ621857 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs376, mRNA sequence
Length = 591
Score = 81.3 bits (171), Expect(2) = 9e-030
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = -1 / -1
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ N V C HTIH CL Q+ACPLCSKSVCDMSK WE++D+ELA
Sbjct: 387 ESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELA 229
Score = 70.7 bits (148), Expect(2) = 9e-030
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = -1 / -1
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
L++ + + +K V ILCNDCG S VQFHL+A KC NCKSYNTRQ
Sbjct: 240 LELAATPMPEPYLNKTVWILCNDCGENSHVQFHLVAQKCLNCKSYNTRQ 94
>gb|BG453707.1|BG453707 NF100E09LF1F1068 Developing leaf Medicago truncatula cDNA clone
NF100E09LF 5', mRNA sequence
Length = 644
Score = 81.3 bits (171), Expect(2) = 2e-028
Identities = 30/53 (56%), Positives = 35/53 (66%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ N V C HTIH CL Q+ACPLCSKSVCDMSK WE++D+ELA
Sbjct: 356 ESVNDVSVLHCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELA 514
Score = 66.1 bits (138), Expect(2) = 2e-028
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = -1 / +2
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNT 590
L++ + + +K V ILCNDCG S VQFHL+A KC NCKSYNT
Sbjct: 503 LELAATPMPEPYLNKTVWILCNDCGENSHVQFHLVAQKCLNCKSYNT 643
>gb|BG450835.1|BG450835 NF093G02DT1F1018 Drought Medicago truncatula cDNA clone NF093G02DT
5', mRNA sequence
Length = 668
Score = 78.5 bits (165), Expect(2) = 3e-028
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -1 / -2
Query: 841 CXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
C HTIH CL Q+ACPLCSKSVCDMSK WE++D+ELA
Sbjct: 655 CGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKIDLELA 527
Score = 68.4 bits (143), Expect(2) = 3e-028
Identities = 26/36 (72%), Positives = 28/36 (77%)
Frame = -1 / -2
Query: 691 HKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+K V ILCNDCG S VQFHL+A KC NCK YNTRQ
Sbjct: 499 NKTVWILCNDCGENSHVQFHLVAQKCLNCKXYNTRQ 392
>gb|AW329404.2|AW329404 N200637e rootphos(-) Medicago truncatula cDNA clone MHRP-19G1, mRNA
sequence
Length = 590
Score = 73.9 bits (155), Expect(2) = 2e-026
Identities = 25/53 (47%), Positives = 33/53 (62%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
+ + PC HTIH C+ ++ CPLCSKS CDMS+ WERLD+E+A
Sbjct: 204 ESTKEIVVMPCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVWERLDIEIA 362
Score = 66.6 bits (139), Expect(2) = 2e-026
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = -1 / +3
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG +V+FH +A KC NC SYNTRQ
Sbjct: 351 IEIAATPMPEQYQNKMVWILCNDCGNTGNVRFHFVALKCLNCNSYNTRQ 497
>gb|CA920186.1|CA920186 EST637904 MTUS Medicago truncatula cDNA clone MTUS-24F4, mRNA
sequence
Length = 640
Score = 67.0 bits (140), Expect(2) = 3e-024
Identities = 24/44 (54%), Positives = 30/44 (68%)
Frame = -1 / -1
Query: 844 PCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMELA 713
PC HTIH C+ ++ CPLCSKS CDMS+ ERLD+E+A
Sbjct: 619 PCGHTIHKSCIDEMREHHRYTCPLCSKSFCDMSRVRERLDIEIA 488
Score = 66.6 bits (139), Expect(2) = 3e-024
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = -1 / -1
Query: 730 LDMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQ 584
+++ + + +KMV ILCNDCG +V+FH +A KC NC SYNTRQ
Sbjct: 499 IEIAATPMPEQYQNKMVWILCNDCGNTGNVRFHFVALKCLNCNSYNTRQ 353
>gb|CA991198.1|CA991198 EST644706 GESD Medicago truncatula cDNA clone GESD-32O23, mRNA
sequence
Length = 839
Score = 64.8 bits (135), Expect(2) = 1e-021
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + D ++ V ILCNDC ++V FH+I HKC +C SYNTR I
Sbjct: 633 EIEATVMPDDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCSSYNTRAI 779
Score = 60.2 bits (125), Expect(2) = 1e-021
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKSV DMS AW+R+D E+
Sbjct: 483 DSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSTAWKRIDEEI 638
>gb|BQ157463.1|BQ157463 NF105B07IR1F1061 Irradiated Medicago truncatula cDNA clone
NF105B07IR 5', mRNA sequence
Length = 674
Score = 64.8 bits (135), Expect(2) = 1e-021
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + D ++ V ILCNDC ++V FH+I HKC +C SYNTR I
Sbjct: 341 EIEATVMPDDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCSSYNTRAI 487
Score = 60.2 bits (125), Expect(2) = 1e-021
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKSV DMS AW+R+D E+
Sbjct: 191 DSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSTAWKRIDEEI 346
>gb|CA989726.1|CA989726 EST643234 GLSD Medicago truncatula cDNA clone pGLSD-42H1, mRNA
sequence
Length = 583
Score = 64.8 bits (135), Expect(2) = 1e-021
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / +3
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + D ++ V ILCNDC ++V FH+I HKC +C SYNTR I
Sbjct: 246 EIEATVMPDDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCSSYNTRAI 392
Score = 60.2 bits (125), Expect(2) = 1e-021
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1 / +3
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKSV DMS AW+R+D E+
Sbjct: 96 DSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSTAWKRIDEEI 251
>gb|AL379975.1|AL379975 MtBB48E09F1 MtBB Medicago truncatula cDNA clone MtBB48E09 T3, mRNA
sequence
Length = 485
Score = 64.8 bits (135), Expect(2) = 1e-021
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = -1 / +2
Query: 727 DMELATLSDSCDHKMVRILCNDCGAISDVQFHLIAHKCQNCKSYNTRQI 581
++E + D ++ V ILCNDC ++V FH+I HKC +C SYNTR I
Sbjct: 323 EIEATVMPDDYRNRKVWILCNDCNDTTEVSFHIIGHKCGHCSSYNTRAI 469
Score = 60.2 bits (125), Expect(2) = 1e-021
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = -1 / +2
Query: 871 DXXNXVXXXPCXHTIHVKCLKXXXXXCQFACPLCSKSVCDMSKAWERLDMEL 716
D C HT+H +C ++ CP+CSKSV DMS AW+R+D E+
Sbjct: 173 DSLKDTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSTAWKRIDEEI 328
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 830,635,123
Number of Sequences: 392609
Number of extensions: 11713212
Number of successful extensions: 53690
Number of sequences better than 1.0e-020: 17
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 29779248132
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)