TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161284.2.6
(621 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ501228.1|AJ501228 AJ501228 MTAMP Medicago truncatula c... 171 1e-041
gb|AW329081.1|AW329081 N200285e rootphos(-) Medicago trunca... 167 1e-040
gb|BE319080.1|BE319080 NF043E01LF1F1004 Developing leaf Med... 167 1e-040
gb|AL372976.1|AL372976 MtBA54H05F1 MtBA Medicago truncatula... 167 1e-040
gb|AL389381.1|AL389381 MtBC54E06F1 MtBC Medicago truncatula... 167 1e-040
gb|AL389382.1|AL389382 MtBC54E06R1 MtBC Medicago truncatula... 167 1e-040
gb|BE941893.1|BE941893 EST421544 MGHG Medicago truncatula c... 167 1e-040
gb|BG455908.1|BG455908 NF071E05PL1F1037 Phosphate starved l... 167 1e-040
gb|BQ155642.1|BQ155642 NF082E09IR1F1071 Irradiated Medicago... 167 1e-040
gb|CX537194.1|CX537194 s13dNF12F05GS046_457584 Germinating ... 167 1e-040
gb|BQ145562.1|BQ145562 NF012F05GS1F1046 Germinating Seed Me... 162 5e-039
gb|BE319089.1|BE319089 NF043F10LF1F1080 Developing leaf Med... 154 1e-036
gb|AJ846369.1|AJ846369 AJ846369 MtSCF Medicago truncatula c... 137 1e-031
gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone m... 93 1e-023
>gb|AJ501228.1|AJ501228 AJ501228 MTAMP Medicago truncatula cDNA clone mtgmadc120004c10,
mRNA sequence
Length = 674
Score = 171 bits (367), Expect = 1e-041
Identities = 70/80 (87%), Positives = 77/80 (96%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 188 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 367
Query: 304 VVIRGNSVVMIEALEPVARS 245
VVIRGNSVV +EALEPV RS
Sbjct: 368 VVIRGNSVVTVEALEPVNRS 427
Score = 105 bits (224), Expect = 7e-022
Identities = 49/86 (56%), Positives = 54/86 (62%)
Frame = +3 / -3
Query: 249 LATGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI* 428
L TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*
Sbjct: 423 LFTGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIMRFAFSLI* 244
Query: 429 SFLSMYFLRSGGCPERLMVTAT*PRT 506
S LSMYF +SGGCP+ LMV + RT
Sbjct: 243 SCLSMYFFKSGGCPDLLMVNSGIERT 166
>gb|AW329081.1|AW329081 N200285e rootphos(-) Medicago truncatula cDNA clone MHRP-16A9, mRNA
sequence
Length = 449
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 33 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 212
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 213 VVIRGNSVVTVEALEPV 263
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -2
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 262 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 83
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 82 LSMYFFKSGGCPDLLMV 32
>gb|BE319080.1|BE319080 NF043E01LF1F1004 Developing leaf Medicago truncatula cDNA clone
NF043E01LF 5', mRNA sequence
Length = 505
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 57 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 236
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 237 VVIRGNSVVTVEALEPV 287
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -1
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 286 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 107
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 106 LSMYFFKSGGCPDLLMV 56
>gb|AL372976.1|AL372976 MtBA54H05F1 MtBA Medicago truncatula cDNA clone MtBA54H05 T3, mRNA
sequence
Length = 381
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +1
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 55 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 234
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 235 VVIRGNSVVTVEALEPV 285
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -2
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 284 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 105
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 104 LSMYFFKSGGCPDLLMV 54
>gb|AL389381.1|AL389381 MtBC54E06F1 MtBC Medicago truncatula cDNA clone MtBC54E06 T3, mRNA
sequence
Length = 470
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 68 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 247
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 248 VVIRGNSVVTVEALEPV 298
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -3
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 297 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 118
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 117 LSMYFFKSGGCPDLLMV 67
>gb|AL389382.1|AL389382 MtBC54E06R1 MtBC Medicago truncatula cDNA clone MtBC54E06 T7, mRNA
sequence
Length = 467
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 51 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 230
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 231 VVIRGNSVVTVEALEPV 281
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -2
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 280 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 101
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 100 LSMYFFKSGGCPDLLMV 50
>gb|BE941893.1|BE941893 EST421544 MGHG Medicago truncatula cDNA clone pMGHG-7G1, mRNA
sequence
Length = 476
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 60 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 239
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 240 VVIRGNSVVTVEALEPV 290
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -2
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 289 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 110
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 109 LSMYFFKSGGCPDLLMV 59
>gb|BG455908.1|BG455908 NF071E05PL1F1037 Phosphate starved leaf Medicago truncatula cDNA
clone NF071E05PL 5', mRNA sequence
Length = 517
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +2
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 65 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 244
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 245 VVIRGNSVVTVEALEPV 295
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -2
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 294 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 115
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 114 LSMYFFKSGGCPDLLMV 64
>gb|BQ155642.1|BQ155642 NF082E09IR1F1071 Irradiated Medicago truncatula cDNA clone
NF082E09IR 5', mRNA sequence
Length = 471
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 42 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 221
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 222 VVIRGNSVVTVEALEPV 272
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -3
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 271 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 92
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 91 LSMYFFKSGGCPDLLMV 41
>gb|CX537194.1|CX537194 s13dNF12F05GS046_457584 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 432
Score = 167 bits (360), Expect = 1e-040
Identities = 68/77 (88%), Positives = 75/77 (97%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 69 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 248
Query: 304 VVIRGNSVVMIEALEPV 254
VVIRGNSVV +EALEPV
Sbjct: 249 VVIRGNSVVTVEALEPV 299
Score = 102 bits (218), Expect = 4e-021
Identities = 46/77 (59%), Positives = 50/77 (64%)
Frame = +3 / -3
Query: 255 TGSSASXXXXXXXXXXXXXXSVLSFPLTSTVLSTTRFMNWSNPRSVPITTRFAFILI*SF 434
TGSSAS S S P TSTVLSTT+F+NWS PR VP RFAF LI*S
Sbjct: 298 TGSSASTVTTLFPLITTIPMSFFSLPFTSTVLSTTKFINWSKPRRVPTIIRFAFSLI*SC 119
Query: 435 LSMYFLRSGGCPERLMV 485
LSMYF +SGGCP+ LMV
Sbjct: 118 LSMYFFKSGGCPDLLMV 68
>gb|BQ145562.1|BQ145562 NF012F05GS1F1046 Germinating Seed Medicago truncatula cDNA clone
NF012F05GS 5', mRNA sequence
Length = 798
Score = 162 bits (348), Expect = 5e-039
Identities = 66/77 (85%), Positives = 73/77 (94%)
Frame = -3 / +3
Query: 484 TMSRSGQPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGM 305
TMSRSGQPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGM
Sbjct: 183 TMSRSGQPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGM 362
Query: 304 VVIRGNSVVMIEALEPV 254
VVI GNSVV + ALEPV
Sbjct: 363 VVIXGNSVVTVXALEPV 413
>gb|BE319089.1|BE319089 NF043F10LF1F1080 Developing leaf Medicago truncatula cDNA clone
NF043F10LF 5', mRNA sequence
Length = 432
Score = 154 bits (331), Expect = 1e-036
Identities = 62/71 (87%), Positives = 69/71 (97%)
Frame = -3 / +3
Query: 466 QPPDLKKYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGN 287
QPPDLKKYMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGMVVIRGN
Sbjct: 3 QPPDLKKYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGN 182
Query: 286 SVVMIEALEPV 254
SVV +EALEPV
Sbjct: 183 SVVTVEALEPV 215
>gb|AJ846369.1|AJ846369 AJ846369 MtSCF Medicago truncatula cDNA clone MtCF02A13S6, mRNA
sequence
Length = 511
Score = 137 bits (294), Expect = 1e-031
Identities = 55/65 (84%), Positives = 63/65 (96%)
Frame = -3 / +3
Query: 448 KYMDKKLQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSVVMIE 269
+YMDK+LQIK+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGMVVIRGNSVV +E
Sbjct: 9 RYMDKQLQIKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVE 188
Query: 268 ALEPV 254
ALEPV
Sbjct: 189 ALEPV 203
>gb|AC150442.2| Medicago truncatula chromosome 7 BAC clone mth2-2o12, complete sequence
Length = 89504
Score = 93.2 bits (197), Expect(3) = 1e-023
Identities = 36/44 (81%), Positives = 42/44 (95%)
Frame = -3 / -1
Query: 430 LQIKMNANRVVIGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVV 299
L +K+NANR+++GTLRGFDQFMNLVVDNTVEVNGN+K DIGMVV
Sbjct: 30503 LAVKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVV 30372
Score = 37.3 bits (75), Expect(3) = 1e-023
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = -3 / -3
Query: 301 VIRGNSVVMIEALEPVARS 245
VIRGNSVV +EALEPV RS
Sbjct: 30261 VIRGNSVVTVEALEPVNRS 30205
Score = 34.1 bits (68), Expect(3) = 1e-023
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = -3 / -2
Query: 484 TMSRSGQPPDLKK 446
TMSRSGQPPDLKK
Sbjct: 31642 TMSRSGQPPDLKK 31604
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 559,324,967
Number of Sequences: 392609
Number of extensions: 7555752
Number of successful extensions: 40090
Number of sequences better than 1.0e-020: 15
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 19158603640
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)