TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.3
(438 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381624.1|AL381624 MtBC02A07R1 MtBC Medicago truncatula... 89 2e-027
gb|CB893561.1|CB893561 EST646353 HOGA Medicago truncatula c... 89 3e-027
gb|CA923157.1|CA923157 EST640875 MTUS Medicago truncatula c... 89 3e-027
gb|BE203860.1|BE203860 EST396536 KV0 Medicago truncatula cD... 89 3e-027
gb|BG454148.1|BG454148 NF107C02LF1F1006 Developing leaf Med... 89 3e-027
gb|BQ148732.1|BQ148732 NF080H09FL1F1080 Developing flower M... 89 3e-027
gb|AW559283.1|AW559283 EST306326 DSIR Medicago truncatula c... 89 3e-027
gb|BQ149002.1|BQ149002 NF086D12FL1F1101 Developing flower M... 89 3e-027
gb|AJ498553.1|AJ498553 AJ498553 MTPOSE Medicago truncatula ... 87 9e-027
gb|AW559538.1|AW559538 EST314586 DSIR Medicago truncatula c... 89 8e-026
gb|AC125482.9| Medicago truncatula clone mth2-15h11, comple... 88 1e-024
gb|BQ165388.1|BQ165388 EST611257 KVKC Medicago truncatula c... 89 3e-023
>gb|AL381624.1|AL381624 MtBC02A07R1 MtBC Medicago truncatula cDNA clone MtBC02A07 T7, mRNA
sequence
Length = 529
Score = 88.6 bits (187), Expect(2) = 2e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 404 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 300
Score = 53.8 bits (111), Expect(2) = 2e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / -3
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 482 AAKASSMFGGTRDKCSGCQKTVYPTEKV 399
>gb|CB893561.1|CB893561 EST646353 HOGA Medicago truncatula cDNA clone HOGA-28E14, mRNA
sequence
Length = 781
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 340 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 444
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +1
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 262 AAKASSMFGGTRDKCSGCQKTVYPTEKV 345
>gb|CA923157.1|CA923157 EST640875 MTUS Medicago truncatula cDNA clone MTUS-63G9, mRNA
sequence
Length = 720
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 493 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 389
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / -3
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 571 AAKASSMFGGTRDKCSGCQKTVYPTEKV 488
>gb|BE203860.1|BE203860 EST396536 KV0 Medicago truncatula cDNA clone pKV0-13C7, mRNA
sequence
Length = 698
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 345 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 449
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +3
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 267 AAKASSMFGGTRDKCSGCQKTVYPTEKV 350
>gb|BG454148.1|BG454148 NF107C02LF1F1006 Developing leaf Medicago truncatula cDNA clone
NF107C02LF 5', mRNA sequence
Length = 667
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 235 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 339
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +1
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 157 AAKASSMFGGTRDKCSGCQKTVYPTEKV 240
>gb|BQ148732.1|BQ148732 NF080H09FL1F1080 Developing flower Medicago truncatula cDNA clone
NF080H09FL 5', mRNA sequence
Length = 645
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 397 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 501
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +1
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 319 AAKASSMFGGTRDKCSGCQKTVYPTEKV 402
>gb|AW559283.1|AW559283 EST306326 DSIR Medicago truncatula cDNA clone pDSIR-25A15, mRNA
sequence
Length = 571
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 283 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 387
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +1
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 205 AAKASSMFGGTRDKCSGCQKTVYPTEKV 288
>gb|BQ149002.1|BQ149002 NF086D12FL1F1101 Developing flower Medicago truncatula cDNA clone
NF086D12FL 5', mRNA sequence
Length = 560
Score = 88.6 bits (187), Expect(2) = 3e-027
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 180 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 284
Score = 53.8 bits (111), Expect(2) = 3e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +3
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 102 AAKASSMFGGTRDKCSGCQKTVYPTEKV 185
>gb|AJ498553.1|AJ498553 AJ498553 MTPOSE Medicago truncatula cDNA clone mt--acc955206a09,
mRNA sequence
Length = 755
Score = 86.8 bits (183), Expect(2) = 9e-027
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = -3 / +2
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGK 5
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGK
Sbjct: 476 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGK 577
Score = 53.8 bits (111), Expect(2) = 9e-027
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / +2
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 398 AAKASSMFGGTRDKCSGCQKTVYPTEKV 481
>gb|AW559538.1|AW559538 EST314586 DSIR Medicago truncatula cDNA clone pDSIR-19N4, mRNA
sequence
Length = 782
Score = 88.6 bits (187), Expect(2) = 8e-026
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / +1
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 412 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 516
Score = 48.7 bits (100), Expect(2) = 8e-026
Identities = 19/28 (67%), Positives = 21/28 (75%)
Frame = -3 / +1
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+K GC KTVYPTE+V
Sbjct: 334 AAKASSMFGGTRDKFSGCQKTVYPTEKV 417
>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence
Length = 129658
Score = 88.1 bits (186), Expect(2) = 1e-024
Identities = 32/34 (94%), Positives = 32/34 (94%)
Frame = -3 / -1
Query: 103 VTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 88996 VTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 88895
Score = 53.8 bits (111), Expect(2) = 1e-024
Identities = 20/28 (71%), Positives = 22/28 (78%)
Frame = -3 / -3
Query: 265 ATKVSSAFAGTREKCVGCSKTVYPTERV 182
A K SS F GTR+KC GC KTVYPTE+V
Sbjct: 89354 AAKASSMFGGTRDKCSGCQKTVYPTEKV 89271
>gb|BQ165388.1|BQ165388 EST611257 KVKC Medicago truncatula cDNA clone pKVKC-8G11, mRNA
sequence
Length = 699
Score = 88.6 bits (187), Expect(2) = 3e-023
Identities = 32/35 (91%), Positives = 33/35 (94%)
Frame = -3 / -3
Query: 106 QVTVNNTMYHKSCFKCCHGGCTISPSNYIAHEGKL 2
+VTVN T YHKSCFKCCHGGCTISPSNYIAHEGKL
Sbjct: 526 KVTVNGTPYHKSCFKCCHGGCTISPSNYIAHEGKL 422
Score = 40.0 bits (81), Expect(2) = 3e-023
Identities = 15/22 (68%), Positives = 16/22 (72%)
Frame = -3 / -2
Query: 265 ATKVSSAFAGTREKCVGCSKTV 200
A K SS F GTR+KC GC KTV
Sbjct: 605 AAKASSMFGGTRDKCSGCQKTV 540
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 464,441,377
Number of Sequences: 392609
Number of extensions: 6418278
Number of successful extensions: 82618
Number of sequences better than 1.0e-020: 14
length of database: 147,244,331
effective HSP length: 52
effective length of database: 126,828,663
effective search space used: 11795065659
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)