TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804898.2.1
(739 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ165539.1|BQ165539 EST611408 KVKC Medicago truncatula c... 70 2e-027
gb|AW329216.2|AW329216 N200428e rootphos(-) Medicago trunca... 92 9e-026
gb|AW560370.1|AW560370 EST315418 DSIR Medicago truncatula c... 70 1e-025
gb|AL388318.1|AL388318 MtBC47H04F1 MtBC Medicago truncatula... 70 1e-025
gb|CA919746.1|CA919746 EST637464 MTUS Medicago truncatula c... 70 2e-023
gb|CA920377.1|CA920377 EST638095 MTUS Medicago truncatula c... 67 8e-023
gb|CB894426.1|CB894426 EST647218 HOGA Medicago truncatula c... 76 9e-023
gb|AJ547897.1|AJ547897 AJ547897 MTAPHEU Medicago truncatula... 70 1e-021
gb|CX529311.1|CX529311 s13dNF02A04MJ021_244679 Methyl Jasmo... 70 1e-021
gb|CA921971.1|CA921971 EST639689 MTUS Medicago truncatula c... 66 2e-021
gb|DW018810.1|DW018810 EST1227771 MTY Medicago truncatula c... 66 2e-021
gb|BQ165420.1|BQ165420 EST611277 KVKC Medicago truncatula c... 66 2e-021
gb|CA920370.1|CA920370 EST638088 MTUS Medicago truncatula c... 64 7e-021
>gb|BQ165539.1|BQ165539 EST611408 KVKC Medicago truncatula cDNA clone pKVKC-10A2, mRNA
sequence
Length = 762
Score = 70.3 bits (147), Expect(3) = 2e-027
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +2 / -1
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
DL ++ VNG ER E EW +FL+AGF +YKITH G S+IEVFP*
Sbjct: 348 DLEMMVLVNGKERNEKEWSNLFLSAGFSNYKITHGLGFKSLIEVFP* 208
Score = 67.5 bits (141), Expect(3) = 2e-027
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +2 / -1
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERCXXXXXXXXXXX 265
V + G+ L + GGDMFE IP +++LK +LHDW++++C+KI+++C
Sbjct: 603 VVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIGNKGKEG 424
Query: 266 XXXXXDTVLGS 298
D V+G+
Sbjct: 423 KVIIIDAVMGN 391
Score = 23.5 bits (45), Expect(3) = 2e-027
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +2 / -1
Query: 59 CTVMDLPHVV 88
C V DLPHVV
Sbjct: 627 CIVFDLPHVV 598
>gb|AW329216.2|AW329216 N200428e rootphos(-) Medicago truncatula cDNA clone MHRP-17E8, mRNA
sequence
Length = 614
Score = 91.8 bits (194), Expect(2) = 9e-026
Identities = 34/59 (57%), Positives = 43/59 (72%)
Frame = +2 / -1
Query: 56 RCTVMDLPHVVAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
+C V DLP VVA + LS+ GGDMF+ IP ADA+MLKWILHDW ++ CIKI++ C
Sbjct: 557 KCVVYDLPQVVANLSSACDNLSYVGGDMFKSIPQADAIMLKWILHDWTDEICIKILKTC 381
Score = 48.3 bits (99), Expect(2) = 9e-026
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2 / -1
Query: 359 ILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
I+ +NG ER EW+ +F+ AGF+DYKI S+IE +P*
Sbjct: 266 IMMGINGKERTGKEWKHLFVEAGFKDYKIFPLFENRSLIEAYP* 135
>gb|AW560370.1|AW560370 EST315418 DSIR Medicago truncatula cDNA clone pDSIR-26L24, mRNA
sequence
Length = 619
Score = 70.3 bits (147), Expect(2) = 1e-025
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +2 / -3
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
DL ++ VNG ER E EW +FL+AGF +YKITH G S+IEVFP*
Sbjct: 356 DLEMMVLVNGKERNEKEWSNLFLSAGFSNYKITHGLGFKSLIEVFP* 216
Score = 67.5 bits (141), Expect(2) = 1e-025
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +2 / -3
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERCXXXXXXXXXXX 265
V + G+ L + GGDMFE IP +++LK +LHDW++++C+KI+++C
Sbjct: 611 VVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIGNKGKEG 432
Query: 266 XXXXXDTVLGS 298
D V+G+
Sbjct: 431 KVIIIDAVMGN 399
>gb|AL388318.1|AL388318 MtBC47H04F1 MtBC Medicago truncatula cDNA clone MtBC47H04 T3, mRNA
sequence
Length = 477
Score = 70.3 bits (147), Expect(2) = 1e-025
Identities = 28/47 (59%), Positives = 34/47 (72%)
Frame = +2 / +3
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
DL ++ VNG ER E EW +FL+AGF +YKITH G S+IEVFP*
Sbjct: 264 DLEMMVLVNGKERNEKEWSNLFLSAGFSNYKITHGLGFKSLIEVFP* 404
Score = 67.5 bits (141), Expect(2) = 1e-025
Identities = 24/71 (33%), Positives = 41/71 (57%)
Frame = +2 / +3
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERCXXXXXXXXXXX 265
V + G+ L + GGDMFE IP +++LK +LHDW++++C+KI+++C
Sbjct: 9 VVDGLQGSENLKYVGGDMFEAIPPTHSILLKGVLHDWNDEECLKILKKCKEAIGNKGKEG 188
Query: 266 XXXXXDTVLGS 298
D V+G+
Sbjct: 189 KVIIIDAVMGN 221
>gb|CA919746.1|CA919746 EST637464 MTUS Medicago truncatula cDNA clone MTUS-17E5, mRNA
sequence
Length = 560
Score = 70.3 bits (147), Expect(3) = 2e-023
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +2 / -2
Query: 101 AGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIM 223
+GT L+F GGDMF+ IP ADA++LKW+LHDWD++ +KI+
Sbjct: 487 SGTQNLNFVGGDMFKSIPPADAVLLKWVLHDWDDELSLKIL 365
Score = 56.1 bits (116), Expect(3) = 2e-023
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2 / -2
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
D+ +++ NG ERE+ EW+++ AGF YKIT G S+IEV+P*
Sbjct: 247 DMVMMTLHNGKEREKKEWKKLIYDAGFSSYKITPICGFKSLIEVYP* 107
Score = 23.5 bits (45), Expect(3) = 2e-023
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +2 / -2
Query: 56 RCTVMDLPHVVA 91
+CTV+D P VVA
Sbjct: 529 KCTVLDQPQVVA 494
>gb|CA920377.1|CA920377 EST638095 MTUS Medicago truncatula cDNA clone MTUS-27D12, mRNA
sequence
Length = 752
Score = 66.6 bits (139), Expect(2) = 8e-023
Identities = 24/49 (48%), Positives = 35/49 (71%)
Frame = +2 / -1
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
V E G+ L++ GGDMF +P ADA++LK +LHDW + CIKI+++C
Sbjct: 743 VVENLCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKC 597
Score = 63.8 bits (133), Expect(2) = 8e-023
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +2 / -1
Query: 362 LSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
+S VNG ER E EW+++F+ AGF+DYKI+ G+ S+IE++P*
Sbjct: 479 ISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP* 351
>gb|CB894426.1|CB894426 EST647218 HOGA Medicago truncatula cDNA clone HOGA-31K19, mRNA
sequence
Length = 817
Score = 76.2 bits (160), Expect(2) = 9e-023
Identities = 28/71 (39%), Positives = 42/71 (59%)
Frame = +2 / +3
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERCXXXXXXXXXXX 265
V + G+ L++ GGDMF+ IP DA++LKWILHDW++++C+KI++ C
Sbjct: 228 VVDGLQGSENLNYVGGDMFKEIPPTDAILLKWILHDWNDEECVKILKNCKDAISKKGKQG 407
Query: 266 XXXXXDTVLGS 298
D VL S
Sbjct: 408 KVIVIDMVLES 440
Score = 51.9 bits (107), Expect(2) = 9e-023
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +2 / +3
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
D+ ++ + G ER + EW ++ +AGF DYKIT G+ S+IE++P*
Sbjct: 486 DMLMMVVLAGKERNKKEWIKLISSAGFSDYKITPILGLRSLIEIYP* 626
>gb|AJ547897.1|AJ547897 AJ547897 MTAPHEU Medicago truncatula cDNA clone mtaehac110001e01,
mRNA sequence
Length = 576
Score = 70.3 bits (147), Expect(2) = 1e-021
Identities = 24/41 (58%), Positives = 34/41 (82%)
Frame = +2 / -1
Query: 101 AGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIM 223
+GT L+F GGDMF+ IP ADA++LKW+LHDWD++ +KI+
Sbjct: 528 SGTQNLNFVGGDMFKSIPPADAVLLKWVLHDWDDELSLKIL 406
Score = 56.1 bits (116), Expect(2) = 1e-021
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2 / -2
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
D+ +++ NG ERE+ EW+++ AGF YKIT G S+IEV+P*
Sbjct: 287 DMVMMTLHNGKEREKKEWKKLIYDAGFSSYKITPICGFKSLIEVYP* 147
>gb|CX529311.1|CX529311 s13dNF02A04MJ021_244679 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 496
Score = 69.8 bits (146), Expect(2) = 1e-021
Identities = 24/40 (60%), Positives = 33/40 (82%)
Frame = +2 / -1
Query: 104 GTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIM 223
GT L+F GGDMF+ IP ADA++LKW+LHDWD++ +KI+
Sbjct: 496 GTQNLNFVGGDMFKSIPPADAVLLKWVLHDWDDELSLKIL 377
Score = 56.1 bits (116), Expect(2) = 1e-021
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +2 / -1
Query: 350 DLHILSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
D+ +++ NG ERE+ EW+++ AGF YKIT G S+IEV+P*
Sbjct: 259 DMVMMTLHNGKEREKKEWKKLIYDAGFSSYKITPICGFKSLIEVYP* 119
>gb|CA921971.1|CA921971 EST639689 MTUS Medicago truncatula cDNA clone MTUS-46H12, mRNA
sequence
Length = 693
Score = 65.7 bits (137), Expect(2) = 2e-021
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +2 / -3
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
V E +G+ L++ GGDMF IP+ADA++LK+ILH+W + C +I+++C
Sbjct: 475 VVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCTRILKKC 329
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 21/43 (48%), Positives = 33/43 (76%)
Frame = +2 / -3
Query: 362 LSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
++ +NG ER E EW+++F+ AGF+DYKI+ G S+IE++P*
Sbjct: 211 MACLNGKERNEEEWKKLFIEAGFQDYKISPLTGFLSLIEIYP* 83
>gb|DW018810.1|DW018810 EST1227771 MTY Medicago truncatula cDNA clone MTYBB22, mRNA
sequence
Length = 761
Score = 65.7 bits (137), Expect(2) = 2e-021
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +2 / +1
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
V E +G+ L++ GGDMF IP+ADA++LK+ILH+W + C +I+++C
Sbjct: 358 VVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCTRILKKC 504
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 21/43 (48%), Positives = 33/43 (76%)
Frame = +2 / +1
Query: 362 LSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
++ +NG ER E EW+++F+ AGF+DYKI+ G S+IE++P*
Sbjct: 622 MACLNGKERNEEEWKKLFIEAGFQDYKISPLTGFLSLIEIYP* 750
>gb|BQ165420.1|BQ165420 EST611277 KVKC Medicago truncatula cDNA clone pKVKC-9A5, mRNA
sequence
Length = 775
Score = 65.7 bits (137), Expect(2) = 2e-021
Identities = 23/49 (46%), Positives = 37/49 (75%)
Frame = +2 / -1
Query: 86 VAEAPAGTAGLSFHGGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
V E +G+ L++ GGDMF IP+ADA++LK+ILH+W + C +I+++C
Sbjct: 559 VVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCTRILKKC 413
Score = 60.2 bits (125), Expect(2) = 2e-021
Identities = 21/43 (48%), Positives = 33/43 (76%)
Frame = +2 / -1
Query: 362 LSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
++ +NG ER E EW+++F+ AGF+DYKI+ G S+IE++P*
Sbjct: 295 MACLNGKERNEEEWKKLFIEAGFQDYKISPLTGFLSLIEIYP* 167
>gb|CA920370.1|CA920370 EST638088 MTUS Medicago truncatula cDNA clone MTUS-27C12, mRNA
sequence
Length = 757
Score = 63.8 bits (133), Expect(2) = 7e-021
Identities = 23/43 (53%), Positives = 34/43 (79%)
Frame = +2 / -3
Query: 362 LSFVNGAEREEHEWRRIFLAAGFRDYKITHTRGIPSIIEVFP* 490
+S VNG ER E EW+++F+ AGF+DYKI+ G+ S+IE++P*
Sbjct: 479 ISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP* 351
Score = 60.2 bits (125), Expect(2) = 7e-021
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +2 / -3
Query: 128 GGDMFEHIPSADALMLKWILHDWDEDKCIKIMERC 232
GGDMF +P ADA++LK +LHDW + CIKI+++C
Sbjct: 701 GGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKC 597
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 585,088,274
Number of Sequences: 392609
Number of extensions: 7986948
Number of successful extensions: 48413
Number of sequences better than 1.0e-020: 13
length of database: 147,244,331
effective HSP length: 54
effective length of database: 126,043,445
effective search space used: 24074297995
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)