TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.160
(878 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL374923.1|AL374923 MtBB10B08F1 MtBB Medicago truncatula... 258 9e-068
gb|BF637138.1|BF637138 NF073A12LF1F1086 Developing leaf Med... 258 9e-068
gb|AJ498107.1|AJ498107 AJ498107 MTPOSE Medicago truncatula ... 258 9e-068
gb|CX539454.1|CX539454 s13dNF61B05GS041_462168 Germinating ... 258 9e-068
gb|DW015718.1|DW015718 EST1224679 MTY Medicago truncatula c... 258 1e-067
gb|AL378671.1|AL378671 MtBB39G04F1 MtBB Medicago truncatula... 253 3e-066
gb|AL374924.1|AL374924 MtBB10B08R2 MtBB Medicago truncatula... 251 1e-065
gb|AL385932.1|AL385932 MtBC31E12R1 MtBC Medicago truncatula... 229 4e-059
gb|AL385931.1|AL385931 MtBC31E12F1 MtBC Medicago truncatula... 194 2e-048
>gb|AL374923.1|AL374923 MtBB10B08F1 MtBB Medicago truncatula cDNA clone MtBB10B08 T3, mRNA
sequence
Length = 494
Score = 258 bits (558), Expect = 9e-068
Identities = 107/147 (72%), Positives = 126/147 (85%)
Frame = -3 / +2
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLC 640
+ ++K AL IAKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C
Sbjct: 38 EKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVC 217
Query: 639 VIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS 460
+IAGNISPIDVITHVPILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS
Sbjct: 218 IIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELS 397
Query: 459 GEVKDKLKSDYDQVVTEVAEATSAMF* 379
EV++KLKS+YDQV +E E S +F*
Sbjct: 398 QEVQEKLKSEYDQVASECRELQSTLF* 478
Score = 146 bits (314), Expect = 4e-034
Identities = 71/114 (62%), Positives = 76/114 (66%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 378 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 199
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVS 820
R +LLTTSLTP H S A TSL V L+SFFPARG AM A F S
Sbjct: 198 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLAMGARACIFFLCTDFS 37
>gb|BF637138.1|BF637138 NF073A12LF1F1086 Developing leaf Medicago truncatula cDNA clone
NF073A12LF 5', mRNA sequence
Length = 588
Score = 258 bits (558), Expect = 9e-068
Identities = 107/147 (72%), Positives = 126/147 (85%)
Frame = -3 / +3
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLC 640
+ ++K AL IAKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C
Sbjct: 27 EKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVC 206
Query: 639 VIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS 460
+IAGNISPIDVITHVPILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS
Sbjct: 207 IIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELS 386
Query: 459 GEVKDKLKSDYDQVVTEVAEATSAMF* 379
EV++KLKS+YDQV +E E S +F*
Sbjct: 387 QEVQEKLKSEYDQVASECRELQSTLF* 467
Score = 146 bits (314), Expect = 4e-034
Identities = 71/114 (62%), Positives = 76/114 (66%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 367 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 188
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVS 820
R +LLTTSLTP H S A TSL V L+SFFPARG AM A F S
Sbjct: 187 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLAMGARACIFFLCTDFS 26
>gb|AJ498107.1|AJ498107 AJ498107 MTPOSE Medicago truncatula cDNA clone mt--acc955201b07,
mRNA sequence
Length = 654
Score = 258 bits (558), Expect = 9e-068
Identities = 107/147 (72%), Positives = 126/147 (85%)
Frame = -3 / +1
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLC 640
+ ++K AL IAKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C
Sbjct: 97 EKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVC 276
Query: 639 VIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS 460
+IAGNISPIDVITHVPILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS
Sbjct: 277 IIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELS 456
Query: 459 GEVKDKLKSDYDQVVTEVAEATSAMF* 379
EV++KLKS+YDQV +E E S +F*
Sbjct: 457 QEVQEKLKSEYDQVASECRELQSTLF* 537
Score = 146 bits (314), Expect = 4e-034
Identities = 71/114 (62%), Positives = 76/114 (66%)
Frame = +2 / -2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 437 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 258
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVS 820
R +LLTTSLTP H S A TSL V L+SFFPARG AM A F S
Sbjct: 257 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLAMGARACIFFLCTDFS 96
>gb|CX539454.1|CX539454 s13dNF61B05GS041_462168 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 596
Score = 258 bits (558), Expect = 9e-068
Identities = 107/147 (72%), Positives = 126/147 (85%)
Frame = -3 / +3
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLC 640
+ ++K AL IAKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C
Sbjct: 60 EKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVC 239
Query: 639 VIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS 460
+IAGNISPIDVITHVPILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS
Sbjct: 240 IIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELS 419
Query: 459 GEVKDKLKSDYDQVVTEVAEATSAMF* 379
EV++KLKS+YDQV +E E S +F*
Sbjct: 420 QEVQEKLKSEYDQVASECRELQSTLF* 500
Score = 146 bits (314), Expect = 4e-034
Identities = 71/114 (62%), Positives = 76/114 (66%)
Frame = +2 / -2
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 400 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 221
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVS 820
R +LLTTSLTP H S A TSL V L+SFFPARG AM A F S
Sbjct: 220 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLAMGARACIFFLCTDFS 59
>gb|DW015718.1|DW015718 EST1224679 MTY Medicago truncatula cDNA clone MTYA878, mRNA
sequence
Length = 636
Score = 258 bits (557), Expect = 1e-067
Identities = 106/146 (72%), Positives = 125/146 (85%)
Frame = -3 / +2
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLC 640
+ ++K AL IAKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C
Sbjct: 83 EKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVC 262
Query: 639 VIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS 460
+IAGNISPIDVITHVPILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS
Sbjct: 263 IIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELS 442
Query: 459 GEVKDKLKSDYDQVVTEVAEATSAMF 382
EV++KLKS+YDQV +E E S +F
Sbjct: 443 QEVQEKLKSEYDQVASECRELQSTLF 520
Score = 146 bits (314), Expect = 4e-034
Identities = 71/114 (62%), Positives = 76/114 (66%)
Frame = +2 / -1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 423 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 244
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVS 820
R +LLTTSLTP H S A TSL V L+SFFPARG AM A F S
Sbjct: 243 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLAMGARACIFFLCTDFS 82
>gb|AL378671.1|AL378671 MtBB39G04F1 MtBB Medicago truncatula cDNA clone MtBB39G04 T3, mRNA
sequence
Length = 469
Score = 253 bits (547), Expect = 3e-066
Identities = 104/140 (74%), Positives = 122/140 (87%)
Frame = -3 / +3
Query: 819 DTETEKKASVALMSIAKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLC 640
+ ++K AL IAKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C
Sbjct: 45 EKSVQRKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVC 224
Query: 639 VIAGNISPIDVITHVPILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELS 460
+IAGNISPIDVITHVPILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS
Sbjct: 225 IIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELS 404
Query: 459 GEVKDKLKSDYDQVVTEVAE 400
EV++KLKS+YDQV +E E
Sbjct: 405 QEVQEKLKSEYDQVASECRE 464
Score = 146 bits (314), Expect = 4e-034
Identities = 71/114 (62%), Positives = 76/114 (66%)
Frame = +2 / -1
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 385 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 206
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFAMDISATEAFFSVSVS 820
R +LLTTSLTP H S A TSL V L+SFFPARG AM A F S
Sbjct: 205 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLAMGARACIFFLCTDFS 44
>gb|AL374924.1|AL374924 MtBB10B08R2 MtBB Medicago truncatula cDNA clone MtBB10B08 T7, mRNA
sequence
Length = 552
Score = 251 bits (542), Expect = 1e-065
Identities = 103/132 (78%), Positives = 119/132 (90%)
Frame = -3 / +3
Query: 774 AKPLAGKKLCKRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHV 595
AKPLAGKKL K+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C+IAGNISPIDVITHV
Sbjct: 3 AKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHV 182
Query: 594 PILCEEANVPYVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVV 415
PILCE+ ++PYVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS EV++KLKS+YDQV
Sbjct: 183 PILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQEKLKSEYDQVA 362
Query: 414 TEVAEATSAMF* 379
+E E S +F*
Sbjct: 363 SECRELQSTLF* 398
Score = 143 bits (306), Expect = 5e-033
Identities = 67/99 (67%), Positives = 72/99 (72%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 298 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 119
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRVRLQSFFPARGFA 775
R +LLTTSLTP H S A TSL V L+SFFPARG A
Sbjct: 118 RLILLTTSLTPLFMHLFSAALLTSLSVFLESFFPARGLA 2
>gb|AL385932.1|AL385932 MtBC31E12R1 MtBC Medicago truncatula cDNA clone MtBC31E12 T7, mRNA
sequence
Length = 551
Score = 229 bits (495), Expect = 4e-059
Identities = 93/122 (76%), Positives = 110/122 (90%)
Frame = -3 / +2
Query: 744 KRTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVP 565
++TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C+IAGNISPIDVITHVPILCE+ ++P
Sbjct: 8 EKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHVPILCEDKDIP 187
Query: 564 YVYVPSKEDLATAGTTKRPTCCVLVLTKPNKGELSGEVKDKLKSDYDQVVTEVAEATSAM 385
YVYV SKEDLATAG TKRPTCCVLV+TKP+KGELS EV++KLKS+YDQV +E E S +
Sbjct: 188 YVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQEKLKSEYDQVASECRELQSTL 367
Query: 384 F* 379
F*
Sbjct: 368 F* 373
Score = 122 bits (261), Expect = 8e-027
Identities = 58/87 (66%), Positives = 62/87 (71%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 273 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 94
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRV 739
R +LLTTSLTP H S A TSL V
Sbjct: 93 RLILLTTSLTPLFMHLFSAALLTSLSV 13
>gb|AL385931.1|AL385931 MtBC31E12F1 MtBC Medicago truncatula cDNA clone MtBC31E12 T3, mRNA
sequence
Length = 280
Score = 194 bits (418), Expect = 2e-048
Identities = 77/93 (82%), Positives = 88/93 (94%)
Frame = -3 / +1
Query: 741 RTLKLVRRASEAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANVPY 562
+TLKLV+RA+E KC+KRGVKEVVKSIRRG KG+C+IAGNISPIDVITHVPILCE+ ++PY
Sbjct: 1 KTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHVPILCEDKDIPY 180
Query: 561 VYVPSKEDLATAGTTKRPTCCVLVLTKPNKGEL 463
VYV SKEDLATAG TKRPTCCVLV+TKP+KGEL
Sbjct: 181 VYVSSKEDLATAGATKRPTCCVLVMTKPSKGEL 279
Score = 122 bits (261), Expect = 8e-027
Identities = 58/87 (66%), Positives = 62/87 (71%)
Frame = +2 / -3
Query: 479 GLVRTKTQQVGLLVVPAVARSSFDGTYT*GTLASSHSIGTCVITSIGEIFPAITHNPLFP 658
GLV TKTQQVGL V PAVARSS D TYT G SSH IGT V+TSIG++FPAI H P P
Sbjct: 263 GLVITKTQQVGLFVAPAVARSSLDETYTYGMSLSSHKIGT*VMTSIGDMFPAIIHTPF*P 84
Query: 659 RRMLLTTSLTPRLRHFASEARRTSLRV 739
R +LLTTSLTP H S A TSL V
Sbjct: 83 RLILLTTSLTPLFMHLFSAALLTSLSV 3
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 856,727,572
Number of Sequences: 392609
Number of extensions: 12243473
Number of successful extensions: 91676
Number of sequences better than 1.0e-020: 10
length of database: 147,244,331
effective HSP length: 55
effective length of database: 125,650,836
effective search space used: 29779248132
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)