TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular tr... 107 1e-024
gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular tr... 100 1e-022
gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular tr... 58 2e-014
gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular tr... 59 3e-014
gb|CO513942.1|CO513942 s13dSG71D1200094_156546 Glandular tr... 72 7e-014
gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular tr... 56 3e-009
gb|CO512304.1|CO512304 s13dSG68D0500042_114122 Glandular tr... 39 4e-004
gb|CO514329.1|CO514329 s13dSG84B1200093_157320 Glandular tr... 39 4e-004
gb|CO514844.1|CO514844 s13dSG56A0300021_328348 Glandular tr... 37 0.002
gb|CO516931.1|CO516931 s13dSG58F0500044_468408 Glandular tr... 33 0.028
gb|CO515612.1|CO515612 s13dSG47E0800067_418283 Glandular tr... 30 0.19
gb|DQ122848.1| Medicago sativa clone NH7 beta-mannosidase m... 27 1.2
gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted... 27 1.7
gb|CO513322.1|CO513322 s13dSG37F0800063_129808 Glandular tr... 27 1.7
gb|CO516678.1|CO516678 s13dSG74A1000071_446684 Glandular tr... 27 1.7
gb|CO514752.1|CO514752 s13dSG55G0400036_328164 Glandular tr... 26 2.3
emb|AJ409163.1|MSA409163 Medicago sativa mRNA for ZR1 protein 26 2.3
gb|CO514874.1|CO514874 s13dSG56D0500046_328408 Glandular tr... 23 2.6
gb|CO513349.1|CO513349 s13dSG37H1200096_129862 Glandular tr... 26 3.2
gb|DQ122804.1| Medicago sativa clone P2 mini-chromosome mai... 26 3.2
emb|X99197.1|MS70KDHSP M.sativa mRNA for 70 kD heat shock p... 23 3.2
gb|CO516379.1|CO516379 s13dSG27A0400021_446086 Glandular tr... 26 4.3
gb|CO511868.1|CO511868 s13dSG02H0900080_103636 Glandular tr... 25 4.4
gb|CO512863.1|CO512863 s13dSG20F0200015_121652 Glandular tr... 25 4.4
gb|CO514391.1|CO514391 s13dSG36A0300019_327442 Glandular tr... 25 4.4
gb|CO514990.1|CO514990 s13dSG26A0300021_397485 Glandular tr... 25 4.4
gb|CO515309.1|CO515309 s13dSG48D1000090_417677 Glandular tr... 25 4.4
gb|CO515751.1|CO515751 s13dSG77D0700062_419651 Glandular tr... 25 4.4
gb|L25042.1|ALFACCASE Medicago sativa acetyl-CoA carboxylas... 25 4.4
gb|AJ888485.1|AJ888485 AJ888485 Medicago sativa subsp. x va... 25 6.1
gb|L40327.1|ALFASPSYN Medicago sativa asparagine synthetase... 25 6.1
gb|CO516344.1|CO516344 s13dSG99D0300026_446016 Glandular tr... 22 7.6
gb|CO513254.1|CO513254 s13dSG24G0900068_129672 Glandular tr... 25 8.4
gb|CO513834.1|CO513834 s13dSG73B0900073_156330 Glandular tr... 25 8.4
gb|CO515281.1|CO515281 s13dSG48A1100085_417621 Glandular tr... 25 8.4
gb|CO515621.1|CO515621 s13dSG47G0300024_418301 Glandular tr... 25 8.4
gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein Ms... 25 8.4
gb|DQ119348.1| Medicago sativa cryptochrome 2B apoprotein m... 25 8.4
>gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 480
Score = 107 bits (233), Expect = 1e-024
Identities = 40/94 (42%), Positives = 61/94 (64%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EEDEAL+++V++HG +NW I+ +IPGR+ SC RW L P + ++ +E
Sbjct: 54 KGPWSPEEDEALQKLVEKHGPRNWSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEE 233
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +IRA +GNKW + + GRT++A+K HW
Sbjct: 234 DDTIIRAHARFGNKWATIARLLSGRTDNAIKNHW 335
Score = 45.6 bits (95), Expect = 3e-006
Identities = 30/95 (31%), Positives = 43/95 (45%)
Frame = -2 / -2
Query: 558 LPMFFECIICPAWEMFDHFTPFVSINLLRTDQS*FLLLRPRLFVYCWV*KVLPS*KA*VG 379
+PM +I A + +PFVS + + +D S L R + W + P+* A*
Sbjct: 338 VPMILNSVISSAR*KPGYCSPFVSKSSMGSDYSIILFRRKSPMLNLW*KLITPT*SA*FP 159
Query: 378 ISARYSTCNSSPVFRPMSFYHLL*CLIFL**PSVF 274
ARY + PV RP+ + L C IF P F
Sbjct: 158 *PARYRFAYNRPVSRPVLLHEFLKCFIFFWTPWTF 54
Score = 35.7 bits (73), Expect(2) = 1e-006
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / -3
Query: 389 HELAFRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
H+ RPGI I+ QF PC T SASSSS H
Sbjct: 169 HDFPDRPGIDLLIIDQFLGPCFSTSF*SASSSSGLH 62
Score = 29.9 bits (60), Expect(2) = 1e-006
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / -3
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSS 450
FQ L A V P K L I+ HLFP A I +SSS
Sbjct: 337 FQ*FLIALSVRPDKSLAIVAHLFPNRAWALIIVSSS 230
>gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 100 bits (218), Expect = 1e-022
Identities = 38/94 (40%), Positives = 59/94 (62%)
Frame = +1 / +3
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDPAINKEPWSQQE 453
K WS EEDEAL+++V++H +NW I+ +IP R+ SC RW L P + ++ +E
Sbjct: 156 KGPWSPEEDEALQKLVEKHRPRNWSIISKSIPDRSGKSCRLRWCNQLSPQVEHRAFTPEE 335
Query: 454 ELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEHW 555
+ +IRA +GNKW + + GRT++A+K HW
Sbjct: 336 DDTIIRAHARFGNKWATIARLLSGRTDNAIKNHW 437
Score = 43.8 bits (91), Expect = 1e-005
Identities = 29/95 (30%), Positives = 42/95 (44%)
Frame = -2 / -3
Query: 558 LPMFFECIICPAWEMFDHFTPFVSINLLRTDQS*FLLLRPRLFVYCWV*KVLPS*KA*VG 379
+PM +I A + +PFVS + + +D S L R + W + P+* A*
Sbjct: 440 VPMILNSVISSAR*KPGYCSPFVSKSSMGSDYSIILFRRKSPMLNLW*KLITPT*SA*FP 261
Query: 378 ISARYSTCNSSPVFRPMSFYHLL*CLIFL**PSVF 274
RY + PV RP+ + L C IF P F
Sbjct: 260 *PVRYRFAYNRPVSRPVLLHEFLKCFIFFWTPWTF 156
Score = 29.9 bits (60), Expect(2) = 1e-004
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = -3 / -1
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSS 450
FQ L A V P K L I+ HLFP A I +SSS
Sbjct: 439 FQ*FLIALSVRPDKSLAIVAHLFPNRAWALIIVSSS 332
Score = 27.7 bits (55), Expect(2) = 1e-004
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = -3 / -1
Query: 389 HELAFRPGIAHAIVRQFFVPCLFTICFSASSSSDDH 282
H+ R GI I+ QF C T SASSSS H
Sbjct: 271 HDFPDRSGIDLLIIDQFLGLCFSTSF*SASSSSGLH 164
>gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 58.1 bits (123), Expect(2) = 2e-014
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +1 / +1
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R + SC RW L P I + +++QEE +I Q + GN+W + + P RT++ +K +
Sbjct: 154 RCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNY 333
Query: 553 W 555
W
Sbjct: 334 W 336
Score = 33.9 bits (69), Expect(2) = 2e-014
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1 / +1
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
KK W+ EED L ++ HG NWR +
Sbjct: 49 KKGPWTPEEDIILVTYIQEHGPGNWRAV 132
Score = 31.2 bits (63), Expect = 0.071
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2 / -1
Query: 558 LPMFFECIICPAWEMFDHFTPFVSINLLRTDQS*FLLLRPRLFVYCWV*KVLPS 397
+P+ F IIC W++ + +P +S +L+ D LL W * + PS
Sbjct: 339 IPIVFYVIICSLWKV*CYCSPSIS*KILKMDNHLLLLFSEVTPFDSWP*VISPS 178
Score = 26.3 bits (52), Expect = 2.3
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ + VL G+ I HLFP I + SSC + L I G R HL
Sbjct: 338 FQ*FFMSLSVLCGRYDAIAAHLFPKRS*RWIIIFSSCSVKLPLLIPGLR*LVHL 177
>gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 58.6 bits (124), Expect(2) = 3e-014
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1 / +2
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L + + S QEE +++ YGN+W + H PGRT++ +K H
Sbjct: 305 RCGKSCRLRWINYLRTDLKRGNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNH 484
Query: 553 W 555
W
Sbjct: 485 W 487
Score = 34.8 bits (71), Expect = 0.006
Identities = 22/54 (40%), Positives = 27/54 (50%)
Frame = -3 / -2
Query: 557 FQCSLSASFVLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
FQ L + VLPGK L I+ HL P* + +SSS D L + R HL
Sbjct: 489 FQWFLISLSVLPGKWLAIMDHLLP*VVWSFTMVSSS*ADMFPLLRSVLR*LIHL 328
Score = 33.0 bits (67), Expect(2) = 3e-014
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1 / +2
Query: 271 KKHRWSSEEDEALKQMVKRHGTKNWRTI 354
K+ RW++EE E L + ++ +G +WR++
Sbjct: 200 KRGRWTTEEGEILSKYIQANGEGSWRSL 283
Score = 27.7 bits (55), Expect = 0.91
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2 / -1
Query: 558 LPMFFECIICPAWEMFDHFTPFVSINLLRTDQS*FLLLR 442
+PM F I+ +W++ + P V+I+ + FLL R
Sbjct: 490 IPMVFNFIVRSSWQVASYHGPPVTISSVELHNGVFLLSR 374
>gb|CO513942.1|CO513942 s13dSG71D1200094_156546 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 513
Score = 71.6 bits (153), Expect = 7e-014
Identities = 30/75 (40%), Positives = 41/75 (54%)
Frame = +1 / +1
Query: 241 NFTESSSSKNKKHRWSSEEDEALKQMVKRHGTKNWRTIACAIPGRNANSCLSRWKYLLDP 420
N T + K WS+EED L ++V++HG +NW I+ I GR+ SC RW L P
Sbjct: 172 NPTNQNKLDRIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSP 351
Query: 421 AINKEPWSQQEELRL 465
+ P+S QE L L
Sbjct: 352 TVEHRPFSSQESLEL 396
>gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 413
Score = 56.3 bits (119), Expect = 3e-009
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +1 / +3
Query: 373 RNANSCLSRWKYLLDPAINKEPWSQQEELRLIRAQQVYGNKWCKMVKHFPGRTNDALKEH 552
R SC RW L+PAI +E +S E ++R ++ GN+W + PGRT + +K +
Sbjct: 201 RCRKSCRLRWVNYLNPAIKRESFSHDEIDMILRLHKLLGNRWSLIAARLPGRTANDVKNY 380
Query: 553 W 555
W
Sbjct: 381 W 383
Score = 36.6 bits (75), Expect = 0.002
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -3 / -2
Query: 530 VLPGKCLTILHHLFP*TCCARINLSSSCCDQGSLFIAGSRRYFHL 396
VLPG I HLFP + C+ +S S ++ SL IAG + + HL
Sbjct: 358 VLPGSLAAINDHLFPRSLCSLRIISISS*EKLSLLIAGFK*FTHL 224
>gb|CO512304.1|CO512304 s13dSG68D0500042_114122 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 39.3 bits (81), Expect = 4e-004
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W++EE+ ALK V +HG WRTI
Sbjct: 296 KQKWTAEEEAALKAGVVKHGAGKWRTI 376
Score = 31.2 bits (63), Expect = 0.071
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -3 / -1
Query: 356 AIVRQFFVPCLFTICFSASSSSDDH 282
+IVR F PCL T F+A+SSS H
Sbjct: 378 SIVRHFPAPCLTTPAFNAASSSAVH 304
>gb|CO514329.1|CO514329 s13dSG84B1200093_157320 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 249
Score = 39.3 bits (81), Expect = 4e-004
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +1 / +3
Query: 268 NKKHRWSSEEDEALKQMVKRHGTKNWRTI 354
N+K +W++EE+EAL Q V+++G W+ I
Sbjct: 51 NQKQKWTAEEEEALHQGVQKYGAGKWKHI 137
>gb|CO514844.1|CO514844 s13dSG56A0300021_328348 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 638
Score = 36.6 bits (75), Expect = 0.002
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1 / +2
Query: 274 KHRWSSEEDEALKQMVKRHGTKNWRTI 354
K +W++EE+ ALK V ++G WRTI
Sbjct: 461 KQKWTAEEEAALKAGVVKYGAGKWRTI 541
>gb|CO516931.1|CO516931 s13dSG58F0500044_468408 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 253
Score = 32.6 bits (66), Expect = 0.028
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3 / +1
Query: 333 DEKLANYCMCYTWPKCQLMPFKMEV 407
D K+ +C TWPKC + K+E+
Sbjct: 43 DLKMTTFCTIVTWPKCPIKIHKVEI 117
>gb|CO515612.1|CO515612 s13dSG47E0800067_418283 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 599
Score = 29.9 bits (60), Expect = 0.19
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1 / +1
Query: 505 FYTICFHKLAAHGSILVPPVATKALCL 425
F+ +CFH + ++ S L + T ALC+
Sbjct: 79 FFFLCFHFIGSNSSTLPTTITTIALCI 159
>gb|DQ122848.1| Medicago sativa clone NH7 beta-mannosidase mRNA, complete cds
Length = 658
Score = 27.2 bits (54), Expect = 1.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = +2 / +3
Query: 161 YHMKLWDCAKAWNQ 202
+H K WDC K W++
Sbjct: 312 FHQKTWDCRK*WHR 353
>gb|AW698687.1|AW698687 R128 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 477
Score = 26.8 bits (53), Expect = 1.7
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +3 / -1
Query: 321 KKTWDEKLANYCMCYTWPK 377
+ W+ K C+C+ WPK
Sbjct: 315 RNIWEPKCP*CCLCWWWPK 259
>gb|CO513322.1|CO513322 s13dSG37F0800063_129808 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 26.8 bits (53), Expect = 1.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +3 / +2
Query: 336 EKLANYCMCYTW 371
EK ++YCMC+ W
Sbjct: 266 EKASSYCMCWCW 301
>gb|CO516678.1|CO516678 s13dSG74A1000071_446684 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 543
Score = 26.8 bits (53), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1 / -1
Query: 217 VPLSLLIPRLGTVPQFHVVYYSATCL 140
+P+ LL+P L VP +V+ SAT L
Sbjct: 192 LPIPLLLPNLSQVPVPVLVHVSATSL 115
>gb|CO514752.1|CO514752 s13dSG55G0400036_328164 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 26.3 bits (52), Expect = 2.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2 / +1
Query: 26 SELLIREQTWSRVVMGCQSASGGLTVQQNTQASQMRLL 139
SEL R+ WS ++ + SG L V+ +T+ Q+ +
Sbjct: 220 SELNFRQGLWSSIIRLLRLRSGILLVKNDTEQLQVHTI 333
>emb|AJ409163.1|MSA409163 Medicago sativa mRNA for ZR1 protein
Length = 3108
Score = 26.3 bits (52), Expect = 2.3
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +3 / -1
Query: 351 YCMCYTWPKC 380
YC C TWP C
Sbjct: 1929 YCNCETWPTC 1900
>gb|CO514874.1|CO514874 s13dSG56D0500046_328408 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 359
Score = 23.2 bits (45), Expect(2) = 2.6
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -3 / -3
Query: 476 CARINLSSSCC 444
C+R NLSSS C
Sbjct: 291 CSRFNLSSSLC 259
Score = 19.1 bits (36), Expect(2) = 2.6
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = -1 / -3
Query: 265 WNYCSP*SSGQFSC 224
W C P + FSC
Sbjct: 51 WKTCPPGKAKGFSC 10
>gb|CO513349.1|CO513349 s13dSG37H1200096_129862 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 581
Score = 25.9 bits (51), Expect = 3.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -1 / +2
Query: 160 YYSATCLQQPHLTCLS 113
YY +T LQ P TCLS
Sbjct: 110 YYRSTPLQSPSSTCLS 157
>gb|DQ122804.1| Medicago sativa clone P2 mini-chromosome maintenance protein mRNA,
partial cds
Length = 655
Score = 25.9 bits (51), Expect = 3.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3 / -1
Query: 443 DQGSLFIAGSRRYFHLERHELAFRP 369
+Q S + RY+H RH L RP
Sbjct: 178 EQ*SFQLDHQHRYYHFHRHYLLLRP 104
>emb|X99197.1|MS70KDHSP M.sativa mRNA for 70 kD heat shock protein
Length = 830
Score = 22.7 bits (44), Expect(2) = 3.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1 / -2
Query: 415 DPAINKEPWSQQEELRLIRAQQV 483
D + PWS+++ +L AQQ+
Sbjct: 142 DSDLRNTPWSRRDTRQLKLAQQI 74
Score = 21.8 bits (42), Expect(2) = 3.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Frame = +2 / -1
Query: 116 QASQMRLLKTCCRVIYHMKLW 178
Q+ + L +CCR + ++ W
Sbjct: 389 QSCHL*LCSSCCRHSFQVRFW 327
>gb|CO516379.1|CO516379 s13dSG27A0400021_446086 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 25.9 bits (51), Expect = 4.3
Identities = 16/73 (21%), Positives = 31/73 (42%)
Frame = +1 / +3
Query: 106 TKHSSKSDEVAEDMLQSNIPHETVGLCQGVESEEIEGPPHKKIVQNFTESSSSKNKKHRW 285
T H+S SDE + + TV + ++ + K V +SS K +
Sbjct: 9 TNHTSSSDETKAIKNSNQTTNATVKAVPTIPNKNLSSDSSLKGVDLHNYTSSLARKTNNG 188
Query: 286 SSEEDEALKQMVK 324
S++ E ++ ++K
Sbjct: 189 SNKYAELMESLMK 227
>gb|CO511868.1|CO511868 s13dSG02H0900080_103636 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 604
Score = 25.4 bits (50), Expect = 4.4
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3 / +3
Query: 338 FVPCLFTICFSASSSSDDHXXXXXXXXXLSVKFWTIFL*GGPSISSD 198
F+P LF++ SSSS+ + + ++ T F G P + ++
Sbjct: 117 FLPLLFSLLTIVSSSSNSNFLLPITKDKTTQQYITTFFIGTPFVQTN 257
>gb|CO512863.1|CO512863 s13dSG20F0200015_121652 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 550
Score = 25.4 bits (50), Expect = 4.4
Identities = 7/21 (33%), Positives = 17/21 (80%)
Frame = +3 / +3
Query: 399 MEVPSRPSNKQRALVATGGTK 461
+++PSR +K R ++++GG++
Sbjct: 456 VDIPSRHRSKHRCMLSSGGSR 518
>gb|CO514391.1|CO514391 s13dSG36A0300019_327442 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 89
Score = 25.4 bits (50), Expect = 4.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2 / -3
Query: 140 KTCCRVIYHMKLW 178
++CCRVI + +LW
Sbjct: 57 RSCCRVIQYKELW 19
>gb|CO514990.1|CO514990 s13dSG26A0300021_397485 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 465
Score = 25.4 bits (50), Expect = 4.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +2 / -1
Query: 140 KTCCRVIYHMKLW 178
++CCRVI + +LW
Sbjct: 57 RSCCRVIQYKELW 19
>gb|CO515309.1|CO515309 s13dSG48D1000090_417677 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 25.4 bits (50), Expect = 4.4
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3 / -3
Query: 332 PCLFTICFSAS 300
PCLF++CFS S
Sbjct: 64 PCLFSLCFSFS 32
>gb|CO515751.1|CO515751 s13dSG77D0700062_419651 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 25.4 bits (50), Expect = 4.4
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1 / +2
Query: 217 VPLSLLIPRLGTVPQFHVVYYSATCLQQPHLTCLSVL 107
V + L++ L T+ Q HV+ CL+ ++ LS L
Sbjct: 446 VLMDLVLVVLSTMKQVHVLLNGVQCLKSAPMSHLSTL 556
>gb|L25042.1|ALFACCASE Medicago sativa acetyl-CoA carboxylase (ACCase) mRNA, complete cds
Length = 7175
Score = 25.4 bits (50), Expect = 4.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2 / +3
Query: 101 VQQNTQASQMRLLKTCCR 154
V QNTQ + R+ TCCR
Sbjct: 3684 VGQNTQRAGNRVHNTCCR 3737
>gb|AJ888485.1|AJ888485 AJ888485 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 546
Score = 25.0 bits (49), Expect = 6.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3 / +3
Query: 9 RSLWWNRSFLSESR 50
R LWW +SFLS R
Sbjct: 171 RLLWWTQSFLSCQR 212
>gb|L40327.1|ALFASPSYN Medicago sativa asparagine synthetase gene, exons 1-13 and complete
cds
Length = 7969
Score = 25.0 bits (49), Expect = 6.1
Identities = 6/8 (75%), Positives = 8/8 (100%)
Frame = -1 / -2
Query: 274 FYFWNYCS 251
F++WNYCS
Sbjct: 2226 FFYWNYCS 2203
>gb|CO516344.1|CO516344 s13dSG99D0300026_446016 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 374
Score = 22.3 bits (43), Expect(2) = 7.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +3 / -2
Query: 423 NKQRALVATGGTKIDPCA 476
N Q ALVA T++ PCA
Sbjct: 265 NTQLALVAERLTRLVPCA 212
Score = 18.7 bits (35), Expect(2) = 7.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 241 NFTESSSSKNKK 276
NFT+ +KNKK
Sbjct: 354 NFTKHVVAKNKK 319
>gb|CO513254.1|CO513254 s13dSG24G0900068_129672 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 421
Score = 24.5 bits (48), Expect = 8.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2 / -3
Query: 149 CRVIYHMKLW 178
C I+HMKLW
Sbjct: 89 CEYIFHMKLW 60
>gb|CO513834.1|CO513834 s13dSG73B0900073_156330 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 175
Score = 24.5 bits (48), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2 / +2
Query: 507 HFTPFVSINLLRTDQS*FLLLRPRLFVYC 421
+++ FVSIN + S FLLL L ++C
Sbjct: 50 NYSSFVSINQSISFCSKFLLLHHSLLLFC 136
>gb|CO515281.1|CO515281 s13dSG48A1100085_417621 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 607
Score = 24.5 bits (48), Expect = 8.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3 / +2
Query: 215 PSISSDSTPWHSPTVSCGILLCNMSSATSSDLLECF 108
PS ++ +T W S + S S+ TSS LL F
Sbjct: 281 PSYTTATTSWSSWSTSTTAWSSRSSTVTSSVLLSLF 388
>gb|CO515621.1|CO515621 s13dSG47G0300024_418301 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 24.5 bits (48), Expect = 8.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3 / +1
Query: 117 KQVR*GC*RHVAE*YTT*NCGTVPRRGIRR 206
K+V *G R + E *+CGT +RG+R+
Sbjct: 16 KKVS*GKWRILLEVEVQ*SCGTKEQRGLRQ 105
>gb|AF069507.1|AF069507 Medicago sativa DnaJ-like protein MsJ1 gene, complete cds
Length = 4449
Score = 24.5 bits (48), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1 / +2
Query: 334 SHVFLPFALVPHLPLMTICVFYF 266
S+ FL ALV L L T +FYF
Sbjct: 1121 SNHFLVQALVVRLSLFTFMLFYF 1189
>gb|DQ119348.1| Medicago sativa cryptochrome 2B apoprotein mRNA, partial cds
Length = 517
Score = 24.5 bits (48), Expect = 8.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / -3
Query: 353 LHVLYLAEMPTHAFQDGST 409
LH++ LA+ H+ DGST
Sbjct: 290 LHLMLLAQ*VVHSMDDGST 234
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.311 0.125 0.383
Matrix: BLOSUM62
Number of Hits to DB: 5,751,528
Number of Sequences: 7669
Number of extensions: 85846
Number of successful extensions: 1543
Number of sequences better than 10.0: 44
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 130469742
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 0 ( 0.0 bits)
S1: 42 (21.8 bits)