TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9h08.xg.2.1
(770 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513318.1|CO513318 s13dSG37F0400031_129800 Glandular tr... 102 2e-034
>gb|CO513318.1|CO513318 s13dSG37F0400031_129800 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 564
Score = 102 bits (217), Expect(2) = 2e-034
Identities = 39/82 (47%), Positives = 54/82 (65%)
Frame = +1 / +1
Query: 334 SFVELFIRESEAVQSKAGRYQSLQEIPFFAYRVPSALAPPYNFTSDLYPAAXSVNVNDAI 513
S VE +E VQ+KAGRY++ +E PFF +P +L P Y F+ L+P A S+N++ ++
Sbjct: 295 SLVEFVFSNTETVQAKAGRYKNPEENPFFPENLPLSLVPSYPFSKFLHPGAASINIDKSL 474
Query: 514 WSMYFDELLPRLXKXGDDGNYA 579
W MYF +LLP GDDGNYA
Sbjct: 475 WKMYFHDLLPLFVASGDDGNYA 540
Score = 57.9 bits (120), Expect(2) = 2e-034
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +1 / +1
Query: 196 SLDTVRDFLTREEDTIVFSLIERAKYPLNRPAYD 297
+LDTVR+ L R+EDTIVF LIERAK+P N YD
Sbjct: 160 TLDTVRETLVRQEDTIVFGLIERAKFPFNSQTYD 261
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,241,941
Number of Sequences: 7669
Number of extensions: 43754
Number of successful extensions: 1131
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 198264580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)