TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular tr... 80 1e-016
gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular tr... 76 2e-015
gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular tr... 76 2e-015
gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular tr... 75 7e-015
gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular tr... 75 7e-015
gb|CO515716.1|CO515716 s13dSG77A0500037_419581 Glandular tr... 42 5e-005
gb|CO512799.1|CO512799 s13dSG88H0200016_121524 Glandular tr... 26 2.7
gb|CO513149.1|CO513149 s13dSG23D1000078_129462 Glandular tr... 26 2.7
gb|CO515330.1|CO515330 s13dSG48F1200103_417719 Glandular tr... 26 2.7
gb|M36100.1|ALFLBA Alfalfa leghemoglobin mRNA, complete cds 26 2.7
emb|X54087.1|MSLEG560 M.sativa leghemoglobin gene for leghe... 26 2.7
emb|X14311.1|MSLEGHE2 Alfalfa mRNA for leghemoglobin (pNL549) 26 2.7
emb|X13375.1|MSLEGHEM Medicago sativa mRNA for leghemoglobin 26 2.7
gb|CO512871.1|CO512871 s13dSG20G0100004_121668 Glandular tr... 25 3.7
emb|X54086.1|MSLEG460 M.sativa leghemoglobin gene for leghe... 25 3.7
gb|CO512953.1|CO512953 s13dSG86G0800056_121832 Glandular tr... 25 5.0
gb|CO512261.1|CO512261 s13dSG03H0500044_114036 Glandular tr... 25 5.1
gb|CO513495.1|CO513495 s13dSG12A1100081_139772 Glandular tr... 25 5.1
gb|CO516606.1|CO516606 s13dSG66B1000079_446540 Glandular tr... 25 5.1
gb|AW698381.1|AW698381 G227 glandular-haired subtracted cDN... 25 5.1
gb|AW698439.1|AW698439 G293 glandular-haired subtracted cDN... 25 5.1
gb|CO516094.1|CO516094 s13dSG65B1000089_445516 Glandular tr... 23 5.5
gb|CO511802.1|CO511802 s13dSG02B1200101_103504 Glandular tr... 24 7.0
gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular tr... 24 7.0
gb|CO513259.1|CO513259 s13dSG24H0200016_129682 Glandular tr... 24 7.0
gb|CO513322.1|CO513322 s13dSG37F0800063_129808 Glandular tr... 24 7.0
gb|CO516410.1|CO516410 s13dSG27D0700060_446148 Glandular tr... 24 7.0
gb|DQ122776.1| Medicago sativa clone RC10 unknown mRNA 24 7.0
gb|CO512170.1|CO512170 s13dSG34G0800056_108660 Glandular tr... 24 9.6
gb|CO512561.1|CO512561 s13dSG08E1100083_121048 Glandular tr... 24 9.6
gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular tr... 24 9.6
gb|CO513158.1|CO513158 s13dSG23E0700051_129480 Glandular tr... 24 9.6
gb|CO513866.1|CO513866 s13dSG73E0600039_156394 Glandular tr... 24 9.6
gb|CO515686.1|CO515686 s13dSG60F0200027_419521 Glandular tr... 24 9.6
gb|CO516298.1|CO516298 s13dSG69G0200008_445924 Glandular tr... 24 9.6
emb|AX468574.1| Sequence 15 from Patent WO0238745 24 9.6
emb|AJ293274.1|MVA293274 Medicago sativa subsp. x varia mRN... 24 9.6
>gb|CO513208.1|CO513208 s13dSG24B1200093_129580 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 598
Score = 80.5 bits (173), Expect = 1e-016
Identities = 36/75 (48%), Positives = 45/75 (60%)
Frame = +1 / +3
Query: 7 AFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKP 186
AF +E+D II HA GN+W+ IA L GRTDN IKN WNS +K+K ID + P
Sbjct: 318 AFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDDSESPP 497
Query: 187 LTEADHGGAAPTIST 231
L + GAA +ST
Sbjct: 498 LKRSVSAGAAIPVST 542
Score = 32.5 bits (66), Expect = 0.023
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / -1
Query: 131 EFHRFLISLSVLPGSCAAI*DHLFPRTA 48
EF FLI+LSV P AI HLFP A
Sbjct: 442 EFQ*FLIALSVRPDKSLAIVAHLFPNRA 359
>gb|CO512415.1|CO512415 s13dSG80F0600047_114344 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 76.4 bits (164), Expect = 2e-015
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +1 / +2
Query: 4 GAFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKL 150
G + EED I++LH GNRWS IA+ LPGRTDNEIKN WNS + +K+
Sbjct: 365 GNISAQEEDTIVKLHTTYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKI 511
Score = 41.5 bits (86), Expect = 4e-005
Identities = 20/30 (66%), Positives = 20/30 (66%)
Frame = -2 / -2
Query: 146 FFLMHEFHRFLISLSVLPGSCAAI*DHLFP 57
F L EF FLISLSVLPG AI DHL P
Sbjct: 507 FLLR*EFQWFLISLSVLPGKWLAIMDHLLP 418
Score = 32.5 bits (66), Expect = 0.023
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -1 / -1
Query: 138 DARVP*ILDLIISPPWQLRCNLRPPVPEDSVQLDDEVFFV 19
+ R+P + + I+ WQ+ PPV SV+L + VF +
Sbjct: 499 EVRIPMVFNFIVRSSWQVASYHGPPVTISSVELHNGVFLL 380
>gb|CO514833.1|CO514833 s13dSG59G1100088_328326 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 480
Score = 76.4 bits (164), Expect = 2e-015
Identities = 33/70 (47%), Positives = 42/70 (60%)
Frame = +1 / +3
Query: 7 AFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKP 186
AF +E+D II HA GN+W+ IA L GRTDN IKN WNS +K+K ID + P
Sbjct: 216 AFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSSIMIDDSESPP 395
Query: 187 LTEADHGGAA 216
+ + GAA
Sbjct: 396 VKRSGSAGAA 425
Score = 32.5 bits (66), Expect = 0.023
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = -2 / -3
Query: 131 EFHRFLISLSVLPGSCAAI*DHLFPRTA 48
EF FLI+LSV P AI HLFP A
Sbjct: 340 EFQ*FLIALSVRPDKSLAIVAHLFPNRA 257
Score = 25.4 bits (50), Expect = 5.0
Identities = 9/44 (20%), Positives = 19/44 (43%)
Frame = +1 / +3
Query: 67 WSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEA 198
WS I+ +PGR+ + W + + ++ + P + A
Sbjct: 123 WSIISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRA 254
>gb|CO511707.1|CO511707 s13dSG01B0800073_103314 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 74.7 bits (160), Expect = 7e-015
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +1 / +1
Query: 4 GAFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQ 156
G F + EE +II L +LGNRW+ IA+ LP RTDN+IKN WN+ +KKKL++
Sbjct: 214 GNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK 366
Score = 33.9 bits (69), Expect = 0.009
Identities = 18/33 (54%), Positives = 20/33 (60%)
Frame = -2 / -2
Query: 152 LSFFLMHEFHRFLISLSVLPGSCAAI*DHLFPR 54
LSFF F F +SLSVL G AI HLFP+
Sbjct: 362 LSFFFK*VFQ*FFMSLSVLCGRYDAIAAHLFPK 264
>gb|CO515771.1|CO515771 s13dSG77F1000091_419691 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 413
Score = 74.7 bits (160), Expect = 7e-015
Identities = 27/48 (56%), Positives = 40/48 (83%)
Frame = +1 / +3
Query: 7 AFAQDEEDLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKL 150
+F+ DE D+I+ LH +LGNRWS IAA+LPGRT N++KN W++ ++KK+
Sbjct: 264 SFSHDEIDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTNLRKKV 407
Score = 43.7 bits (91), Expect = 8e-006
Identities = 18/25 (72%), Positives = 20/25 (80%)
Frame = -2 / -2
Query: 119 FLISLSVLPGSCAAI*DHLFPRTAC 45
F SL+VLPGS AAI DHLFPR+ C
Sbjct: 376 FFTSLAVLPGSLAAINDHLFPRSLC 302
>gb|CO515716.1|CO515716 s13dSG77A0500037_419581 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 41.9 bits (87), Expect = 5e-005
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +1 / +2
Query: 52 VLGNRWSQIAAQLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLTEADH 204
+ G RW++IA + GRTDN +KN +++ KK+ + + + + T +++
Sbjct: 110 IFGYRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNISYTNSNN 262
Score = 30.3 bits (61), Expect = 0.11
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2 / -3
Query: 152 LSFFLMHEFHRFLISLSVLPGSCAAI*DHLFP 57
L+ FL + RF +LSVLP + AI HL+P
Sbjct: 210 LALFLHNVEKRFFTALSVLPETTFAISVHLYP 115
>gb|CO512799.1|CO512799 s13dSG88H0200016_121524 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 25.8 bits (51), Expect = 2.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2 / +2
Query: 182 LWVLGSMPFCLSFFLMHEFHRFLIS 108
LW+ G P CL+ +++ F R L++
Sbjct: 356 LWLSGHFPTCLTEEVINSFARILLT 430
>gb|CO513149.1|CO513149 s13dSG23D1000078_129462 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 586
Score = 25.8 bits (51), Expect = 2.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +2 / -1
Query: 332 CPCTTRIVLKHQT 370
CPC T+ +KHQT
Sbjct: 526 CPCDTQTRIKHQT 488
>gb|CO515330.1|CO515330 s13dSG48F1200103_417719 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 25.8 bits (51), Expect = 2.7
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -2 / +1
Query: 182 LWVLGSMPFCLSFFLMHE 129
L+VL ++ F SFFL+H+
Sbjct: 13 LFVLSTLAFVFSFFLLHK 66
>gb|M36100.1|ALFLBA Alfalfa leghemoglobin mRNA, complete cds
Length = 578
Score = 25.8 bits (51), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +3
Query: 419 VSCSRNSSFGGSLGRAKFGVSAR 351
+SCS +S+ GGS GR G R
Sbjct: 222 LSCSTSSNRGGSFGRCYVGCYPR 290
>emb|X54087.1|MSLEG560 M.sativa leghemoglobin gene for leghemoglobin (clone 560)
Length = 515
Score = 25.8 bits (51), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +1
Query: 419 VSCSRNSSFGGSLGRAKFGVSAR 351
+SCS +S+ GGS GR G R
Sbjct: 160 LSCSTSSNRGGSFGRCYVGCYPR 228
>emb|X14311.1|MSLEGHE2 Alfalfa mRNA for leghemoglobin (pNL549)
Length = 578
Score = 25.8 bits (51), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +3
Query: 419 VSCSRNSSFGGSLGRAKFGVSAR 351
+SCS +S+ GGS GR G R
Sbjct: 222 LSCSTSSNRGGSFGRCYVGCYPR 290
>emb|X13375.1|MSLEGHEM Medicago sativa mRNA for leghemoglobin
Length = 559
Score = 25.8 bits (51), Expect = 2.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +3
Query: 419 VSCSRNSSFGGSLGRAKFGVSAR 351
+SCS +S+ GGS GR G R
Sbjct: 225 LSCSTSSNRGGSFGRCYVGCYPR 293
>gb|CO512871.1|CO512871 s13dSG20G0100004_121668 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 441
Score = 25.4 bits (50), Expect = 3.7
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2 / +3
Query: 407 WSSLLLDTRVHQPA 448
W S +L+T +HQP+
Sbjct: 240 WKSFMLETLIHQPS 281
>emb|X54086.1|MSLEG460 M.sativa leghemoglobin gene for leghemoglobin (clone 460)
Length = 407
Score = 25.4 bits (50), Expect = 3.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +2
Query: 419 VSCSRNSSFGGSLGRAKFGVSAR 351
+SCS +S+ GGS GR G R
Sbjct: 77 LSCSTSSNRGGSFGRCCVGCYPR 145
>gb|CO512953.1|CO512953 s13dSG86G0800056_121832 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 25.4 bits (50), Expect = 5.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +1 / +3
Query: 199 DHGGAAPTISTERTSGSSDINPSSTGPLGNLS 294
D GAA T T+ S + PSS G G S
Sbjct: 378 DFAGAAAPTQTPPTAASGCVYPSSPGNAGTPS 473
>gb|CO512261.1|CO512261 s13dSG03H0500044_114036 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 524
Score = 24.9 bits (49), Expect = 5.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1 / -1
Query: 258 DVAGP*GSLGADGGSCTAVIS 196
D AGP + GA G C A IS
Sbjct: 212 DGAGPVAA*GATGAGCAAAIS 150
>gb|CO513495.1|CO513495 s13dSG12A1100081_139772 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 24.9 bits (49), Expect = 5.1
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -2 / -2
Query: 158 FCLSFFLMHEFHRFLISLSVLP 93
FC F L H H+ VLP
Sbjct: 405 FCYCFLLQHHHHQLAYPFLVLP 340
>gb|CO516606.1|CO516606 s13dSG66B1000079_446540 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 539
Score = 24.9 bits (49), Expect = 5.1
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = -1 / +1
Query: 108 IISPPWQLRCNLRPPVPEDSVQLDDEVFFVLGECPP 1
+ SPP PP P S +L + F L PP
Sbjct: 43 LFSPPQPPPPAFHPPQPARSARLTKRITFSLSPQPP 150
>gb|AW698381.1|AW698381 G227 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 324
Score = 24.9 bits (49), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1 / +3
Query: 114 DLIISPPWQLRCNLRPPVPEDSVQL 40
DL++SPP + PVP+ S+ L
Sbjct: 84 DLLLSPPLPVHLLALAPVPDPSLPL 158
>gb|AW698439.1|AW698439 G293 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 325
Score = 24.9 bits (49), Expect = 5.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1 / +3
Query: 114 DLIISPPWQLRCNLRPPVPEDSVQL 40
DL++SPP + PVP+ S+ L
Sbjct: 84 DLLLSPPLPVHLLALAPVPDPSLPL 158
>gb|CO516094.1|CO516094 s13dSG65B1000089_445516 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 329
Score = 23.1 bits (45), Expect(2) = 5.5
Identities = 6/14 (42%), Positives = 7/14 (50%)
Frame = +2 / -2
Query: 371 WHALSCHQRSCSWS 412
W + C SC WS
Sbjct: 109 WKGVHCSSNSCMWS 68
Score = 17.3 bits (32), Expect(2) = 5.5
Identities = 5/7 (71%), Positives = 7/7 (100%)
Frame = +2 / -1
Query: 80 QRSCQGG 100
+RSC+GG
Sbjct: 272 RRSCKGG 252
>gb|CO511802.1|CO511802 s13dSG02B1200101_103504 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 595
Score = 24.5 bits (48), Expect = 7.0
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +2 / +1
Query: 374 HALSCHQRSCSWSSL 418
H L C +CSW SL
Sbjct: 13 HGLKCR*GACSWKSL 57
>gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 24.5 bits (48), Expect = 7.0
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2 / +2
Query: 371 WHALSCHQRS 400
WH SCH+RS
Sbjct: 38 WHVSSCHRRS 67
>gb|CO513259.1|CO513259 s13dSG24H0200016_129682 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 24.5 bits (48), Expect = 7.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +2 / -2
Query: 359 KHQTWHALSCHQRSCSWSSLLLDTRVHQP 445
+H L HQ+ C LLL VHQP
Sbjct: 474 QHSLLLLLLLHQQHCYLLVLLLLRHVHQP 388
>gb|CO513322.1|CO513322 s13dSG37F0800063_129808 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 24.5 bits (48), Expect = 7.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -2 / +1
Query: 158 FCLSFFLMHEFHRFLISL 105
F L FFL FH F +S+
Sbjct: 28 FLLHFFLFFSFHSFKVSV 81
>gb|CO516410.1|CO516410 s13dSG27D0700060_446148 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 498
Score = 24.5 bits (48), Expect = 7.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1 / -3
Query: 198 SLSKWLVGVGINAFLP 151
++SKW G+G++ LP
Sbjct: 73 TISKWFTGLGLHLVLP 26
>gb|DQ122776.1| Medicago sativa clone RC10 unknown mRNA
Length = 420
Score = 24.5 bits (48), Expect = 7.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2 / -1
Query: 332 CPCTTRIVLKHQTWHA 379
CPC ++ KHQ+ HA
Sbjct: 264 CPCLLVLMHKHQSKHA 217
>gb|CO512170.1|CO512170 s13dSG34G0800056_108660 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 24.0 bits (47), Expect = 9.6
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 380 LSCHQRSCSWSSLLLDTRVHQ 442
LSC R W+ +L+ + +HQ
Sbjct: 162 LSCSTRQHRWTRILVSSLLHQ 224
>gb|CO512561.1|CO512561 s13dSG08E1100083_121048 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 593
Score = 24.0 bits (47), Expect = 9.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2 / +1
Query: 176 PTSHLLRLITAVQLPPSAPREPQGPATS 259
PT+ + Q PPS P P P +S
Sbjct: 154 PTTTTTTAVVISQQPPSPPPPPSPPQSS 237
>gb|CO512850.1|CO512850 s13dSG20E0100003_121626 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 398
Score = 24.0 bits (47), Expect = 9.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3 / +1
Query: 441 NLPLIRPNSLFPF 479
NL L PNS+FPF
Sbjct: 31 NLSLPNPNSVFPF 69
>gb|CO513158.1|CO513158 s13dSG23E0700051_129480 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 547
Score = 24.0 bits (47), Expect = 9.6
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -1 / -3
Query: 216 SCTAVISLSKWLVGVGINAFLPQLLLDARVP*ILDLIISPPWQLRCNLRPPVPED 52
+ T + + SKW+ G ++L +R P LDL++ + L P + D
Sbjct: 236 AATPISAPSKWIFGGPTPRITVSVVLPSR*PNPLDLLLHLQLSPQLQLLPQLQPD 72
>gb|CO513866.1|CO513866 s13dSG73E0600039_156394 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 24.0 bits (47), Expect = 9.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2 / +1
Query: 308 RRLNHQC*CPCTTR 349
RRL +C CPC+ R
Sbjct: 283 RRLCRRCGCPCSIR 324
>gb|CO515686.1|CO515686 s13dSG60F0200027_419521 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 559
Score = 24.0 bits (47), Expect = 9.6
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +2 / +2
Query: 332 CPCTTRIVLKHQTWH 376
C CTT L Q WH
Sbjct: 170 CNCTTTYGLSFQRWH 214
>gb|CO516298.1|CO516298 s13dSG69G0200008_445924 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 507
Score = 24.0 bits (47), Expect = 9.6
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2 / +3
Query: 308 RRLNHQC*CPCTTR 349
RRL +C CPC+ R
Sbjct: 276 RRLCRRCGCPCSIR 317
>emb|AX468574.1| Sequence 15 from Patent WO0238745
Length = 1495
Score = 24.0 bits (47), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2 / +2
Query: 182 LWVLGSMPFCLSFFLMHEFHRFLIS 108
L ++ + C+S+FL H+ H L S
Sbjct: 1181 LIIIRVLQICISYFLHHQDHFLLSS 1255
>emb|AJ293274.1|MVA293274 Medicago sativa subsp. x varia mRNA for MEK map kinase kinase (simkk
gene)
Length = 1536
Score = 24.0 bits (47), Expect = 9.6
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2 / +3
Query: 182 LWVLGSMPFCLSFFLMHEFHRFLIS 108
L ++ + C+S+FL H+ H L S
Sbjct: 1197 LIIIRVLQICISYFLHHQDHFLLSS 1271
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.311 0.129 0.382
Matrix: BLOSUM62
Number of Hits to DB: 4,126,372
Number of Sequences: 7669
Number of extensions: 57088
Number of successful extensions: 1699
Number of sequences better than 10.0: 43
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 108396990
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 0 ( 0.0 bits)
S1: 42 (21.8 bits)