TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ7h03.xg.2.1
(487 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular tr... 106 9e-038
>gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 603
Score = 106 bits (226), Expect(2) = 9e-038
Identities = 41/74 (55%), Positives = 46/74 (62%)
Frame = +2 / +3
Query: 71 SFTGTQXXCAECDKXXXXIDLLXXXXXTYHKTCFXXXHCKGILSXXSYSSMXXXLYCKTH 250
SF GTQ C C+K +D L +YHK CF HCKG L SYSSM LYC+ H
Sbjct: 168 SFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCRPH 347
Query: 251 FEQLFKETGSFSKN 292
FEQLFKE G+FSKN
Sbjct: 348 FEQLFKEHGNFSKN 389
Score = 64.3 bits (134), Expect(2) = 9e-038
Identities = 26/50 (52%), Positives = 30/50 (60%)
Frame = +2 / +3
Query: 329 LTRAPSKLSSXFSGTXXXXXACQKTVYPLEXLTLEXXSYHKXXXXXSHGG 478
LTR PSK + FSGT C KT YPLE +T+E +YHK SHGG
Sbjct: 438 LTRTPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGG 587
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,587,622
Number of Sequences: 7669
Number of extensions: 18314
Number of successful extensions: 562
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 112096680
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)