TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBJ4h04.xg.2.2
(494 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular tr... 108 2e-037
>gb|CO515289.1|CO515289 s13dSG48B1200101_417637 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 603
Score = 108 bits (231), Expect(2) = 2e-037
Identities = 41/76 (53%), Positives = 49/76 (64%)
Frame = +2 / +3
Query: 68 TMSFTGXQDKCTXCDKTXHFIDLLTXXXXIYHKTCXXXXHCKGXXSMCSYSSMDXXLYCK 247
TMSF G Q KC C+KT + +D L+ YHK C HCKG + SYSSM+ LYC+
Sbjct: 162 TMSFIGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSSYSSMEGVLYCR 341
Query: 248 THFEQLFKXTGSFSKN 295
HFEQLFK G+FSKN
Sbjct: 342 PHFEQLFKEHGNFSKN 389
Score = 60.6 bits (126), Expect(2) = 2e-037
Identities = 24/47 (51%), Positives = 28/47 (59%)
Frame = +2 / +3
Query: 332 LTRAPSKLSSAFSGTXDKXAACQKTXYPXXXLTLXXXXYHKXXXKCS 472
LTR PSK + FSGT +K A C KT YP +T+ YHK KCS
Sbjct: 438 LTRTPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCS 578
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 2,563,255
Number of Sequences: 7669
Number of extensions: 20342
Number of successful extensions: 606
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 114899097
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)