TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAY3d01.yg.3.1
(808 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515531.1|CO515531 s13dSG52H0900080_418121 Glandular tr... 38 5e-007
gb|CO512635.1|CO512635 s13dSG13F0500043_121196 Glandular tr... 46 6e-006
gb|CO516898.1|CO516898 s13dSG58C0100002_468342 Glandular tr... 46 6e-006
gb|CO511902.1|CO511902 s13dSG05D0200026_103704 Glandular tr... 35 0.012
gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular tr... 35 0.012
gb|CO512698.1|CO512698 s13dSG19E1000071_121322 Glandular tr... 35 0.012
gb|CO515673.1|CO515673 s13dSG60D1000090_419495 Glandular tr... 35 0.012
gb|AW698590.1|AW698590 g563 glandular-haired subtracted cDN... 34 0.032
gb|CO513255.1|CO513255 s13dSG24G1000072_129674 Glandular tr... 33 0.061
gb|CO515597.1|CO515597 s13dSG47C1100086_418253 Glandular tr... 32 0.11
gb|CO515519.1|CO515519 s13dSG52F1200103_418097 Glandular tr... 31 0.22
gb|AF355597.1|AF355597 Medicago sativa MscN4 putative nodul... 28 2.0
gb|AF355596.1| Medicago sativa nodule clone MsNc20a mRNA, c... 28 2.0
gb|CO513087.1|CO513087 s13dSG89F0800063_122100 Glandular tr... 27 3.8
gb|CO516304.1|CO516304 s13dSG69G1100086_445936 Glandular tr... 27 3.8
gb|CO517038.1|CO517038 s13dSG31E0300019_468622 Glandular tr... 27 3.8
gb|CO517251.1|CO517251 s13dSG32F0300031_486098 Glandular tr... 24 4.5
gb|CO513961.1|CO513961 s13dSG71F0900075_156584 Glandular tr... 26 5.2
gb|CO517011.1|CO517011 s13dSG31A0200005_468568 Glandular tr... 26 5.2
emb|AJ966574.1| Medicago sativa subsp. x varia mRNA for put... 26 5.2
gb|CO512236.1|CO512236 s13dSG03F0200015_113986 Glandular tr... 26 7.1
gb|CO512391.1|CO512391 s13dSG80D0300026_114296 Glandular tr... 26 7.1
gb|CO512905.1|CO512905 s13dSG86B0800061_121736 Glandular tr... 26 7.1
gb|CO515258.1|CO515258 s13dSG96G0300024_399381 Glandular tr... 26 7.1
gb|CO516835.1|CO516835 s13dSG98D0100010_446998 Glandular tr... 26 7.1
gb|CO517272.1|CO517272 s13dSG32H0500048_486140 Glandular tr... 26 7.1
gb|AF416338.1|AF416338 Medicago sativa eukaryotic translati... 26 7.1
gb|AF439380.1| Medicago sativa retrotransposon polyprotein ... 26 7.1
gb|CO512059.1|CO512059 s13dSG18D0600046_108438 Glandular tr... 25 9.8
gb|CO515083.1|CO515083 s13dSG97H0300032_397671 Glandular tr... 25 9.8
gb|U35073.1|MSU35073 Medicago sativa nodulin (ENOD8) gene, ... 25 9.8
gb|AF212109.1|AF212109 Medicago sativa ATP-dependent phosph... 25 9.8
gb|AF411546.1| Medicago sativa clone pMcig34 cold acclimati... 25 9.8
>gb|CO515531.1|CO515531 s13dSG52H0900080_418121 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 503
Score = 38.2 bits (77), Expect(2) = 5e-007
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2 / +1
Query: 422 DVSNADNLAACFEKHVQTYNGLDICINCAGIANKTLVYD 538
DV++ D + E+ + LD+ +NCAG+A T VY+
Sbjct: 283 DVTDEDQITGALEQLKTKFGRLDVLVNCAGVAIATKVYN 399
Score = 31.3 bits (62), Expect(2) = 5e-007
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2 / +1
Query: 200 AGEMELKPGMSALVTGGASGIGKALCIAFARRG 298
A ++ G+ ALVTGGASG+G+ + +G
Sbjct: 109 ASKVRSVKGLVALVTGGASGLGRGVVERLLNQG 207
Score = 28.6 bits (56), Expect = 1.1
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2 / -1
Query: 312 TVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
T P + + P PEAPPVT A P
Sbjct: 221 TTPRAPWFKRRSTTPRPRPEAPPVTKATSP 132
>gb|CO512635.1|CO512635 s13dSG13F0500043_121196 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 46.0 bits (94), Expect = 6e-006
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2 / +2
Query: 224 GMSALVTGGASGIGKALCIAFARRGLFVTVVDFSEENGREVATLVQKENSKFH 382
G A+VTG ASGIG F G FV + D ++E G +A + + +H
Sbjct: 77 GKVAIVTGAASGIGAEAVKIFVENGAFVVIADINDELGHHLANSIGLDKVSYH 235
Score = 31.8 bits (63), Expect = 0.11
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2 / -1
Query: 336 PFSSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
P SS S TN P ++ P+P A PVT A +P
Sbjct: 189 PNSSLISAMTTNAPFSTNIFTASAPIPLAAPVTIATLP 76
>gb|CO516898.1|CO516898 s13dSG58C0100002_468342 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 254
Score = 46.0 bits (94), Expect = 6e-006
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +2 / +2
Query: 224 GMSALVTGGASGIGKALCIAFARRGLFVTVVDFSEENGREVATLVQKENSKFH 382
G A+VTG ASGIG F G FV + D ++E G +A + + +H
Sbjct: 77 GKVAIVTGAASGIGAEAVKIFVENGAFVVIADINDELGHHLANSIGLDKVSYH 235
Score = 31.8 bits (63), Expect = 0.11
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2 / -3
Query: 336 PFSSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
P SS S TN P ++ P+P A PVT A +P
Sbjct: 189 PNSSLISAMTTNAPFSTNIFTASAPIPLAAPVTIATLP 76
>gb|CO511902.1|CO511902 s13dSG05D0200026_103704 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 35.0 bits (70), Expect = 0.012
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 330 SSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
S + S+ T PLL KA ++ PM A PVT DMP
Sbjct: 435 SLKLSSPTTPSPLLFKARETWDPMKPAAPVTRTDMP 328
Score = 33.1 bits (66), Expect = 0.044
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2 / +2
Query: 200 AGEMELKPGMSALVTGGASGIGKALCIAFARRGLFVTVVD 319
+ ++ + GMS LVTG A IG + +A RRG V +D
Sbjct: 305 SAQIHRQGGMSVLVTGAAGFIGSHVSLALKRRGDGVVGLD 424
>gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 35.0 bits (70), Expect = 0.012
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2 / -3
Query: 330 SSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
S + S+ T PLL KA ++ PM A PVT DMP
Sbjct: 145 SLKLSSPTTPSPLLFKARETWDPMKPAAPVTRTDMP 38
Score = 33.1 bits (66), Expect = 0.044
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2 / +3
Query: 200 AGEMELKPGMSALVTGGASGIGKALCIAFARRGLFVTVVD 319
+ ++ + GMS LVTG A IG + +A RRG V +D
Sbjct: 15 SAQIHRQGGMSVLVTGAAGFIGSHVSLALKRRGDGVVGLD 134
>gb|CO512698.1|CO512698 s13dSG19E1000071_121322 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 35.0 bits (70), Expect = 0.012
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2 / -2
Query: 330 SSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
S + S+ T PLL KA ++ PM A PVT DMP
Sbjct: 458 SLKLSSPTTPSPLLFKARETWDPMKPAAPVTRTDMP 351
Score = 33.1 bits (66), Expect = 0.044
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2 / +1
Query: 200 AGEMELKPGMSALVTGGASGIGKALCIAFARRGLFVTVVD 319
+ ++ + GMS LVTG A IG + +A RRG V +D
Sbjct: 328 SAQIHRQGGMSVLVTGAAGFIGSHVSLALKRRGDGVVGLD 447
>gb|CO515673.1|CO515673 s13dSG60D1000090_419495 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 35.0 bits (70), Expect = 0.012
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -2 / -3
Query: 330 SSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMP 223
S + S+ T PLL KA ++ PM A PVT DMP
Sbjct: 456 SLKLSSPTTPSPLLFKARETWDPMKPAAPVTRTDMP 349
Score = 33.1 bits (66), Expect = 0.044
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2 / +2
Query: 200 AGEMELKPGMSALVTGGASGIGKALCIAFARRGLFVTVVD 319
+ ++ + GMS LVTG A IG + +A RRG V +D
Sbjct: 326 SAQIHRQGGMSVLVTGAAGFIGSHVSLALKRRGDGVVGLD 445
>gb|AW698590.1|AW698590 g563 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 407
Score = 33.6 bits (67), Expect = 0.032
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2 / +2
Query: 650 GVIINIGSAAGLYPMFLDPVYSAAKGGVVMFTRSLS 757
G I+ SAAGL + + VY+A KG V FT++L+
Sbjct: 65 GSIVFTSSAAGLKAIPVISVYAATKGAVNQFTKNLA 172
Score = 25.4 bits (49), Expect = 9.8
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2 / -3
Query: 747 LVNITTPPFAALYTGSRNIG*RPAAEPMFIMTP 649
LVN T P A T I +PAAE + M P
Sbjct: 162 LVN*FTAPLVAA*TDMTGIAFKPAAEEVNTMLP 64
>gb|CO513255.1|CO513255 s13dSG24G1000072_129674 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 32.7 bits (65), Expect = 0.061
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2 / +2
Query: 641 KKPGVIINIGSAAGLYPMFLDPVYSAAKGGVVMFTRSL 754
+K G I+N+GS AGL + YSA+K + T +L
Sbjct: 419 RKQGKIVNVGSVAGLASGPWNGAYSASKAAIHALTDTL 532
>gb|CO515597.1|CO515597 s13dSG47C1100086_418253 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 31.8 bits (63), Expect = 0.11
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +2 / +1
Query: 224 GMSALVTGGASGIGKALCIAFARRGLFVTVVDFSEENGREVATLVQKE 367
G++A+VTG +SGIG A G+ V + ++ N + KE
Sbjct: 133 GLTAIVTGASSGIGVETTRVLALHGVHVIMAVRNKVNANNTREAILKE 276
>gb|CO515519.1|CO515519 s13dSG52F1200103_418097 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 519
Score = 30.9 bits (61), Expect = 0.22
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2 / +3
Query: 224 GMSALVTGGASGIGKALCIAFARRGLFV 307
G++A+VTG +SGIG A RG+ V
Sbjct: 159 GLTAIVTGASSGIGAETTRVLALRGVHV 242
>gb|AF355597.1|AF355597 Medicago sativa MscN4 putative nodule membrane protein mRNA, complete
cds
Length = 2367
Score = 27.6 bits (54), Expect = 2.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / +1
Query: 723 KGVWLCLQDHFLH*NA 770
+G+W+C + FLH NA
Sbjct: 1738 EGIWICCRHKFLHPNA 1785
>gb|AF355596.1| Medicago sativa nodule clone MsNc20a mRNA, complete sequence
Length = 1776
Score = 27.6 bits (54), Expect = 2.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3 / -3
Query: 723 KGVWLCLQDHFLH*NA 770
+G+W+C + FLH NA
Sbjct: 586 EGIWICCRHKFLHPNA 539
>gb|CO513087.1|CO513087 s13dSG89F0800063_122100 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 609
Score = 26.7 bits (52), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1 / +2
Query: 67 SSPSPLRPRQFRVPAGASSRFASR 138
S+PS L+P FR+ + SSR + R
Sbjct: 137 SNPSILQPTMFRIASKLSSRVSPR 208
>gb|CO516304.1|CO516304 s13dSG69G1100086_445936 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 26.7 bits (52), Expect = 3.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +2 / +2
Query: 236 LVTGGASGIGKALCIAFARRGLFVTVVD 319
LVTGGA IG + + VT+VD
Sbjct: 428 LVTGGAGYIGSHATLRLLKESYRVTIVD 511
>gb|CO517038.1|CO517038 s13dSG31E0300019_468622 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 457
Score = 26.7 bits (52), Expect = 3.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = +1 / -1
Query: 715 CGKRGCGYVYKITFSIETPWCSCQ 786
C C ++ F + TP CSC+
Sbjct: 352 CHFTSCKHILHCPFQLPTPCCSCE 281
>gb|CO517251.1|CO517251 s13dSG32F0300031_486098 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 23.5 bits (45), Expect(2) = 4.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2 / +1
Query: 185 STHPCAGEMELKPGMSALVTGGASGI 262
ST+PCA + ++P S V GI
Sbjct: 487 STNPCASAVHMEPFPSPAVMAEFPGI 564
Score = 21.7 bits (41), Expect(2) = 4.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +1 / +1
Query: 73 PSPLRPRQFRVPAGASSRFASRTSRLRRC 159
P P P +P+ +SRF + RC
Sbjct: 355 PPPTSPDSLTLPSATTSRFRNFNPIPFRC 441
>gb|CO513961.1|CO513961 s13dSG71F0900075_156584 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 26.3 bits (51), Expect = 5.2
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +1 / -2
Query: 475 IQWTRYLHQLCWN 513
IQ TRYL +CWN
Sbjct: 228 IQDTRYLLSICWN 190
>gb|CO517011.1|CO517011 s13dSG31A0200005_468568 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 26.3 bits (51), Expect = 5.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -2 / -2
Query: 330 SSEKSTTVTNKPLLAKAIQSAFPMPEAPPVTSADMPGLSSISP 202
S++ S+ T+ PLL P+P P S P ++ SP
Sbjct: 275 SADSSSLPTSTPLLLSYTVHFHPLPPQHPALSHSPPPQAASSP 147
>emb|AJ966574.1| Medicago sativa subsp. x varia mRNA for putative Rac GTPase
(rac1-like gene)
Length = 727
Score = 26.3 bits (51), Expect = 5.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3 / -1
Query: 107 GTRNCRGRSGEGD 69
GTR C+G++G GD
Sbjct: 235 GTRRCQGKTGGGD 197
>gb|CO512236.1|CO512236 s13dSG03F0200015_113986 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 25.8 bits (50), Expect = 7.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 598 H*WYSHCKSNNAK 636
H WY HC+S N++
Sbjct: 388 HLWYFHCQSTNSQ 350
>gb|CO512391.1|CO512391 s13dSG80D0300026_114296 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 606
Score = 25.8 bits (50), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3 / -1
Query: 732 WLCLQDHFLH*NAMVFVSMCSAQ 800
WL L +H+ + ++FV CS Q
Sbjct: 423 WLGLYEHWPRHSCLIFVYSCSVQ 355
>gb|CO512905.1|CO512905 s13dSG86B0800061_121736 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 590
Score = 25.8 bits (50), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2 / +2
Query: 224 GMSALVTGGASGIGKALCIAFARRG 298
G + LVTG A +G +A +RG
Sbjct: 467 GFAVLVTGAAGFVGSHCSLALKKRG 541
>gb|CO515258.1|CO515258 s13dSG96G0300024_399381 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 494
Score = 25.8 bits (50), Expect = 7.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 598 H*WYSHCKSNNAK 636
H WY HC+S N++
Sbjct: 107 HLWYFHCQSTNSQ 69
>gb|CO516835.1|CO516835 s13dSG98D0100010_446998 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 468
Score = 25.8 bits (50), Expect = 7.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1 / -3
Query: 598 H*WYSHCKSNNAK 636
H WY HC+S N++
Sbjct: 376 HLWYFHCQSTNSQ 338
>gb|CO517272.1|CO517272 s13dSG32H0500048_486140 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 25.8 bits (50), Expect = 7.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Frame = -2 / +1
Query: 258 PEAPPVTSADMPGLSSISPAQGWV 187
PE PP A+ PG+ + +V
Sbjct: 442 PEVPPAVMAEFPGICPVPSTDNFV 513
>gb|AF416338.1|AF416338 Medicago sativa eukaryotic translation initiation factor 5A-2 mRNA,
complete cds
Length = 649
Score = 25.8 bits (50), Expect = 7.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +1 / -1
Query: 598 H*WYSHCKSNNAK 636
H WY HC+S N++
Sbjct: 391 HLWYFHCQSTNSQ 353
>gb|AF439380.1| Medicago sativa retrotransposon polyprotein gene interrupted by LTR
retroelement MCIRE, complete sequence
Length = 18789
Score = 25.8 bits (50), Expect = 7.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3 / -3
Query: 687 ILCSSIPYIVRQKGVWLCLQDHFL 758
+LCS +P+ + G W HFL
Sbjct: 18673 LLCSHLPF*LSASGSWQSTTIHFL 18602
>gb|CO512059.1|CO512059 s13dSG18D0600046_108438 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 25.4 bits (49), Expect = 9.8
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +2 / +2
Query: 230 SALVTGGASGIGKALCIAFARRGLFVTVVDFSEENGREVATLVQKENSKFHGDL 391
+ LVTGGA IG + G +VD + + V++ ++F +L
Sbjct: 251 TVLVTGGAGYIGSHTVLQLLLGGFKTVIVDNLDNSSEVAVHRVKELAAEFGNNL 412
>gb|CO515083.1|CO515083 s13dSG97H0300032_397671 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 25.4 bits (49), Expect = 9.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1 / +3
Query: 160 RSGEGAKCEMRSGTRLRPARGTAEAEVGKE 71
RSG G C T+ R R +E+G++
Sbjct: 186 RSGIGRDCGKEQKTKTRVGRDGLRSEIGRD 275
>gb|U35073.1|MSU35073 Medicago sativa nodulin (ENOD8) gene, complete cds
Length = 4716
Score = 25.4 bits (49), Expect = 9.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2 / -3
Query: 467 VQTYNGLDICINCAGIANKTLVYD 538
++ Y LDIC++C I L D
Sbjct: 2341 IKKYTSLDICVSCPIILTNRLNLD 2270
>gb|AF212109.1|AF212109 Medicago sativa ATP-dependent phosphoenolpyruvate carboxykinase (PCK)
mRNA, partial cds
Length = 1307
Score = 25.4 bits (49), Expect = 9.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2 / -2
Query: 336 PFSSEKSTTVTNKPLLAKAIQSAFPMPEAP 247
PFS ++ ++ K LL + FP+PE+P
Sbjct: 1237 PFSLQQCSSSPIKYLL*SVERVVFPVPESP 1148
>gb|AF411546.1| Medicago sativa clone pMcig34 cold acclimation-specific mRNA
sequence
Length = 1493
Score = 25.4 bits (49), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 503 CAGIANKTLVYDDTSDGTRTW 565
CAGI+ KTL+ D S + W
Sbjct: 726 CAGISLKTLIKDQKS*KSAKW 788
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,107,007
Number of Sequences: 7669
Number of extensions: 75004
Number of successful extensions: 839
Number of sequences better than 10.0: 35
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 209382220
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)