TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511854.1|CO511854 s13dSG02G0500040_103608 Glandular tr... 122 9e-029
>gb|CO511854.1|CO511854 s13dSG02G0500040_103608 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 439
Score = 122 bits (260), Expect = 9e-029
Identities = 49/94 (52%), Positives = 64/94 (68%)
Frame = +1 / +3
Query: 184 LVSYLGASVFVFLAVWLVSGRCVRLSKTDRLLMCWWAFTGLTHIMIEGPFVFTPDFFKKE 363
++S G+ + A+ ++ +K DRLL+ WWAFTGLTH+++EG FVF P+FFK
Sbjct: 156 ILSVYGSFFVILFALTWFLSGRLKKTKVDRLLIFWWAFTGLTHLILEGYFVFAPEFFKDN 335
Query: 364 NPNFFDEVWKEYSKGDSRYVARDTATVTVEGITA 465
+ EVWKEYSKGDS YVARD A V VEG+TA
Sbjct: 336 TGFYLAEVWKEYSKGDSTYVARDAAVVAVEGLTA 437
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 6,895,194
Number of Sequences: 7669
Number of extensions: 85498
Number of successful extensions: 957
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 235213056
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)