TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L46398.2.1
(1263 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA,... 103 1e-038
gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular tr... 106 1e-037
gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular tr... 107 1e-034
gb|AF335473.2|AF335473 Medicago sativa MADS box protein-lik... 97 7e-028
gb|CO515922.1|CO515922 s13dSG91H0300028_421383 Glandular tr... 105 3e-026
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 96 9e-021
>gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA, partial cds
Length = 775
Score = 103 bits (219), Expect(2) = 1e-038
Identities = 41/67 (61%), Positives = 52/67 (77%)
Frame = +1 / +1
Query: 208 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGV 387
RG++++KRIEN NRQV FSKRRNGLLKKA EL++LCDAEV ++IFS KLY+F S +
Sbjct: 1 RGKIQIKRIENTTNRQVIFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSL 180
Query: 388 TKTLERY 408
+ RY
Sbjct: 181 RSVIGRY 201
Score = 72.1 bits (151), Expect(2) = 1e-038
Identities = 34/90 (37%), Positives = 54/90 (60%)
Frame = +1 / +1
Query: 445 SALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQR 624
S SE + +E + LR + LQ + R ++GE+L L+VKELQ LE QLE +L R +
Sbjct: 235 STASEIKFGQREAAVLRQQLHNLQESHRQIMGEELSGLTVKELQGLENQLEISLRGVRMK 414
Query: 625 KTQVMMEQVEELRRTERHLGEMNRQLKHKL 714
K Q+ M++++EL R + + N +L K+
Sbjct: 415 KEQLFMDEIQELNRKGDIIHQENVELYRKV 504
>gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 501
Score = 106 bits (227), Expect(2) = 1e-037
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGR +V+LKRIE+KINRQVTFSKRR GLLKKA E+SVLCDAEVALIIFS GKL+ + +
Sbjct: 91 MGRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFNYST 267
Score = 64.8 bits (135), Expect(2) = 1e-037
Identities = 26/48 (54%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 463 QSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECAL 606
++W E ++L+AK E L+R QRH LGEDL +S KELQ LE+QL+ L
Sbjct: 358 ENWTMEYTRLKAKIELLERNQRHYLGEDLDSMSHKELQSLEQQLDTGL 501
>gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 107 bits (229), Expect(2) = 1e-034
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +1 / +2
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGS 378
MGR +V+LKRIE+KINRQVTFSKRR GLLKKA E+SVLCDAEVALIIFS GKL+++ +
Sbjct: 32 MGRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFDYST 208
Score = 54.2 bits (112), Expect(2) = 1e-034
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +1 / +2
Query: 463 QSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQ 576
++W E ++L+AK E L+R QRH LGEDL +S KELQ
Sbjct: 299 ENWTMEYTRLKAKIELLERNQRHYLGEDLNSMSHKELQ 412
>gb|AF335473.2|AF335473 Medicago sativa MADS box protein-like protein NGL9 mRNA, complete
cds
Length = 801
Score = 97.3 bits (206), Expect(2) = 7e-028
Identities = 38/63 (60%), Positives = 53/63 (84%)
Frame = +1 / +1
Query: 202 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEFGSA 381
MGRG++E+KRIEN NRQVT+SKR++G+LKKA E++VLCDA+V+ IIF+ GK++E+ S
Sbjct: 1 MGRGKIEIKRIENSSNRQVTYSKRKSGILKKANEINVLCDAQVSTIIFAPSGKMHEYISP 180
Query: 382 GVT 390
T
Sbjct: 181 STT 189
Score = 41.8 bits (85), Expect(2) = 7e-028
Identities = 22/72 (30%), Positives = 36/72 (50%)
Frame = +1 / +1
Query: 478 EMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQVMMEQVEE 657
E+ KL+ + E ++ RHL G+D+ L+ K+L LE LE L R ++ +V
Sbjct: 268 EIEKLKKENEDMEIKLRHLKGKDINTLNYKKLMSLEDVLENGLLTIRDKQMEVYQMVTRN 447
Query: 658 LRRTERHLGEMN 693
+ E E+N
Sbjct: 448 DKILEEENRELN 483
>gb|CO515922.1|CO515922 s13dSG91H0300028_421383 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 465
Score = 105 bits (224), Expect(2) = 3e-026
Identities = 44/90 (48%), Positives = 67/90 (74%)
Frame = +1 / +1
Query: 448 ALSESQSWYQEMSKLRAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRK 627
++ + S QE KL+A++E+LQRTQR+L+GEDLGPLS K+L+ LE+QL+ +L Q R +
Sbjct: 46 SMKKELSSQQEYLKLKARYESLQRTQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTR 225
Query: 628 TQVMMEQVEELRRTERHLGEMNRQLKHKLE 717
TQ M++Q+ +L+R E L E NR L+ ++E
Sbjct: 226 TQFMLDQLGDLQRKEHLLCEANRALRQRME 315
Score = 28.1 bits (55), Expect(2) = 3e-026
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +1 / +1
Query: 841 MDCEPTLQIGY 873
++CEPTLQIGY
Sbjct: 421 IECEPTLQIGY 453
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 95.9 bits (203), Expect = 9e-021
Identities = 37/59 (62%), Positives = 51/59 (86%)
Frame = +1 / +2
Query: 196 VGMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSGRGKLYEF 372
+ M RG++++KRIEN NRQVT+SKRR+GL KKA EL+VLCDA+V++I+FS GKL+E+
Sbjct: 1148 LAMARGKIQIKRIENTTNRQVTYSKRRDGLFKKANELTVLCDAKVSIIMFSSTGKLHEY 1324
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 10,688,243
Number of Sequences: 7669
Number of extensions: 152226
Number of successful extensions: 1534
Number of sequences better than 1.0e-020: 7
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 346387977
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)