TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512887.1|CO512887 s13dSG20H0700060_121700 Glandular tr... 76 3e-026
gb|CO512956.1|CO512956 s13dSG86G1100084_121838 Glandular tr... 72 4e-025
gb|U28213.1|MSU28213 Medicago sativa vestitone reductase mR... 54 2e-018
gb|AW698695.1|AW698695 R143 non-glandular-haired subtracted... 76 1e-014
emb|X80222.1|MSDFR1 M.sativa mRNA for dihydroflavonol-4-red... 40 4e-013
gb|CO515075.1|CO515075 s13dSG97E0800067_397655 Glandular tr... 67 7e-012
gb|CO512190.1|CO512190 s13dSG03A1200085_113894 Glandular tr... 37 1e-011
gb|CO513763.1|CO513763 s13dSG15H0800064_140308 Glandular tr... 60 2e-011
gb|CO515272.1|CO515272 s13dSG96H0900080_399409 Glandular tr... 32 0.16
gb|CO512059.1|CO512059 s13dSG18D0600046_108438 Glandular tr... 30 0.79
gb|CO512512.1|CO512512 s13dSG100H110009_114538 Glandular tr... 29 1.5
gb|CO513683.1|CO513683 s13dSG17G0400024_140148 Glandular tr... 29 1.5
gb|CO514321.1|CO514321 s13dSG84B0100009_157304 Glandular tr... 29 1.5
gb|CO514652.1|CO514652 s13dSG46D0700062_327964 Glandular tr... 29 1.5
gb|CO514722.1|CO514722 s13dSG55C1200098_328104 Glandular tr... 29 1.5
gb|CO514756.1|CO514756 s13dSG55G0900072_328172 Glandular tr... 29 1.5
gb|CO514967.1|CO514967 s13dSG63F0500047_397439 Glandular tr... 29 1.5
gb|CO511822.1|CO511822 s13dSG02D0800074_103544 Glandular tr... 28 2.8
gb|CO516304.1|CO516304 s13dSG69G1100086_445936 Glandular tr... 28 2.8
gb|CO511902.1|CO511902 s13dSG05D0200026_103704 Glandular tr... 28 3.9
gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular tr... 28 3.9
gb|CO512698.1|CO512698 s13dSG19E1000071_121322 Glandular tr... 28 3.9
gb|CO513016.1|CO513016 s13dSG09F0400031_121958 Glandular tr... 28 3.9
gb|CO515673.1|CO515673 s13dSG60D1000090_419495 Glandular tr... 28 3.9
gb|CO517056.1|CO517056 s13dSG31G0700054_468658 Glandular tr... 28 3.9
gb|CO512714.1|CO512714 s13dSG19G0500036_121354 Glandular tr... 27 7.3
gb|CO515296.1|CO515296 s13dSG48C0800066_417651 Glandular tr... 27 7.3
>gb|CO512887.1|CO512887 s13dSG20H0700060_121700 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 75.8 bits (159), Expect(3) = 3e-026
Identities = 30/44 (68%), Positives = 35/44 (79%)
Frame = +3 / +1
Query: 156 LSSGQGRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPK 287
LSS G VCVTGA G+IASWLV+ LL +GYTV+ TVR+P DPK
Sbjct: 46 LSSNLGNVVCVTGASGYIASWLVRLLLNRGYTVKATVRDPNDPK 177
Score = 47.8 bits (98), Expect(3) = 3e-026
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3 / +1
Query: 507 VVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQGAWEVAR 674
V+ +S Y R P VD+T ++D + C + WY +KT+AE+ AW+ +
Sbjct: 418 VLTSSIAAVAYNGKPRTPDVVVDETWFTDADLCAKSNLWYVVSKTLAEEAAWKFVK 585
Score = 44.1 bits (90), Expect = 4e-005
Identities = 23/40 (57%), Positives = 23/40 (57%)
Frame = -2 / -1
Query: 289 FFGSTGFLTVPRTV*PFSRRRLTSQEAMNPPAPVTQTVRP 170
F GS G TV TV*P R TS EAM P APVT T P
Sbjct: 179 FLGSFGSRTVALTV*PRLRSNRTSHEAM*PEAPVTHTTFP 60
Score = 28.1 bits (55), Expect(3) = 3e-026
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 384 GCDGVFHAASPVTDD 428
GC GVFH ASP D
Sbjct: 277 GCHGVFHTASPFYHD 321
>gb|CO512956.1|CO512956 s13dSG86G1100084_121838 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 72.1 bits (151), Expect(3) = 4e-025
Identities = 29/44 (65%), Positives = 34/44 (77%)
Frame = +3 / +1
Query: 156 LSSGQGRTVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPK 287
+SS G VCVTGA G+IASWLV LL +GYTV+ TVR+P DPK
Sbjct: 46 MSSNLGNVVCVTGASGYIASWLV*LLLNRGYTVKATVRDPNDPK 177
Score = 47.3 bits (97), Expect(3) = 4e-025
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +3 / +1
Query: 507 VVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQGAWE 665
V+ +S Y R P VD+T ++D + C + WY +KT+AE+ AW+
Sbjct: 418 VLTSSIAAVAYNGKPRTPDVVVDETWFTDADLCAKSNLWYVVSKTLAEEAAWK 576
Score = 44.6 bits (91), Expect = 3e-005
Identities = 23/41 (56%), Positives = 24/41 (58%)
Frame = -2 / -1
Query: 292 SFFGSTGFLTVPRTV*PFSRRRLTSQEAMNPPAPVTQTVRP 170
+F GS G TV TV*P R TS EAM P APVT T P
Sbjct: 182 TFLGSFGSRTVALTV*PRLRSNQTSHEAM*PEAPVTHTTFP 60
Score = 28.1 bits (55), Expect(3) = 4e-025
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3 / +1
Query: 384 GCDGVFHAASPVTDD 428
GC GVFH ASP D
Sbjct: 277 GCHGVFHTASPFYHD 321
>gb|U28213.1|MSU28213 Medicago sativa vestitone reductase mRNA, complete cds
Length = 1237
Score = 54.2 bits (112), Expect(3) = 2e-018
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3 / +2
Query: 180 VCVTGAGGFIASWLVKRLLEKGYTVRGTVRNPVDPKND 293
VCVTG GF+ SW++K LLE GY+V T+R + K D
Sbjct: 74 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD 187
Score = 41.8 bits (85), Expect(3) = 2e-018
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = +3 / +2
Query: 819 VHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDLCRVLAKLFPEYPVPT 968
VHV DVA AH+ + E GRY C+ + ++ ++L+ +PEY + T
Sbjct: 737 VHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILT 886
Score = 35.4 bits (71), Expect(3) = 2e-018
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +3 / +2
Query: 357 PQSLAEAFSGCDGVFHAASPV 419
P S A A GC G+FH ASP+
Sbjct: 257 PDSFAAAIEGCVGIFHTASPI 319
Score = 31.3 bits (62), Expect(2) = 6e-005
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2 / -2
Query: 415 GEAAWKTPSQPEKASARLCG 356
GEA W P+QP A+A+L G
Sbjct: 315 GEAVWNIPTQPSIAAAKLSG 256
Score = 29.9 bits (59), Expect(2) = 6e-005
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = -2 / -2
Query: 292 SFFGSTGFLTVPRTV*PFSRRRLTSQEAMNPPAPVTQTV 176
S S L V T PFSRR L E P PVT T+
Sbjct: 186 SLLRSGSALIVVLTEYPFSRRLLIIHEPRKPVPPVTHTL 70
>gb|AW698695.1|AW698695 R143 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 289
Score = 75.8 bits (159), Expect = 1e-014
Identities = 33/82 (40%), Positives = 47/82 (57%)
Frame = +3 / -2
Query: 438 MIEPAIRGTRYVMAAADDAGVKRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQ 617
++EPAI+G V+ AGV+RVV S I V +P K + CW+D+EYCK +
Sbjct: 252 ILEPAIQGKVNVLKVVKKAGVERVVPRSWISAVIXSPRWPADKIKAEDCWTDVEYCKEKK 73
Query: 618 NWYCYAKTVAEQGAWEVARKRG 683
+Y AKT AE+ WE ++ G
Sbjct: 72 LYYPIAKTXAEKAGWEFVKETG 7
Score = 37.3 bits (75), Expect = 0.005
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = -2 / +2
Query: 607 LQYSRSLQQVSSTGLLGSR*GFMYTVPMEDVNTTRFTPA 491
LQYS S+QQ S+ L G T + D+ TTR TPA
Sbjct: 83 LQYSTSVQQSSALILSAGHLGLXITAEIHDLGTTRSTPA 199
>emb|X80222.1|MSDFR1 M.sativa mRNA for dihydroflavonol-4-reductase
Length = 650
Score = 40.0 bits (81), Expect(4) = 4e-013
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +3 / +1
Query: 213 SWLVKRLLEKGYTVRGTVRNPVDPK 287
SWLV RL+E GY VR TVR+P + K
Sbjct: 4 SWLVMRLMEPGYMVRATVRDPENLK 78
Score = 31.3 bits (62), Expect(4) = 4e-013
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3 / +1
Query: 540 MNPYRDPSKPVDDTCWSDLEYCKNTQ 617
+N D D++CWSD+E+C+ +
Sbjct: 343 LNVTEDQKPLWDESCWSDVEFCRRVK 420
Score = 31.3 bits (62), Expect(4) = 4e-013
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3 / +1
Query: 363 SLAEAFSGCDGVFHAASPV 419
S EA GC GVFH A+P+
Sbjct: 157 SFDEAIKGCTGVFHVATPM 213
Score = 29.0 bits (57), Expect = 1.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = -2 / -1
Query: 292 SFFGSTGFLTVPRTV*PFSRRRLTSQE 212
+FF +G TV RT+*P S +TSQE
Sbjct: 83 TFFKFSGSRTVARTM*PGSMSLMTSQE 3
Score = 26.3 bits (51), Expect(4) = 4e-013
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3 / +1
Query: 606 KNTQNWYCYAKTVAEQGAWEVARK 677
K T Y +KT+AEQ AW+ A++
Sbjct: 418 KMTGWMYFVSKTLAEQEAWKFAKE 489
>gb|CO515075.1|CO515075 s13dSG97E0800067_397655 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 346
Score = 66.6 bits (139), Expect = 7e-012
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +3 / +1
Query: 177 TVCVTGAGGFIASWLVKRLLEKGYTVRGTVRNP 275
TVCVTGA GFI SWLV RL+E GYTVR TVR+P
Sbjct: 148 TVCVTGASGFIGSWLVMRLIEHGYTVRATVRDP 246
Score = 46.4 bits (95), Expect = 9e-006
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = -2 / -3
Query: 295 WSFFGSTGFLTVPRTV*PFSRRRLTSQEAMNPPAPVTQTV 176
++FF +G TV RTV*P S +TS + M P APVTQTV
Sbjct: 266 FTFFMLSGSRTVARTV*PCSISLITSHDPMKPEAPVTQTV 147
>gb|CO512190.1|CO512190 s13dSG03A1200085_113894 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 37.3 bits (75), Expect(3) = 1e-011
Identities = 15/53 (28%), Positives = 29/53 (54%)
Frame = +3 / +3
Query: 501 KRVVFTSSIGTVYMNPYRDPSKPVDDTCWSDLEYCKNTQNWYCYAKTVAEQGA 659
K V +S+ V+ + +D+ WSD+ +C+ + W+ +KT+AE+ A
Sbjct: 411 KVVFTSSATAVVWREDRKTIEPDLDEIHWSDVNFCRXFKLWHGMSKTLAEKTA 569
Score = 35.9 bits (72), Expect(3) = 1e-011
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3 / +3
Query: 177 TVCVTGAGGFIASWLVKRLLEKGYTVRGTVR 269
TVC A G + LV+RLL++GYTV +++
Sbjct: 81 TVCFMDASGQLGFSLVQRLLQRGYTVHASIQ 173
Score = 28.1 bits (55), Expect(3) = 1e-011
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3 / +3
Query: 363 SLAEAFSGCDGVFHAASPVTDDP 431
S+ +A GC G+F++ P D P
Sbjct: 258 SIIDALRGCSGLFYSFEPPFDQP 326
>gb|CO513763.1|CO513763 s13dSG15H0800064_140308 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 485
Score = 60.2 bits (125), Expect(2) = 2e-011
Identities = 25/73 (34%), Positives = 39/73 (53%)
Frame = +3 / +1
Query: 744 NASTDHVMKYLTGSATTYVNAAQAYVHVRDVAEAHVRVYEAPHAHGRYICAESTLHRGDL 923
N+S + L G TY + H +D+A AH+ +E A GR++C E+ H D
Sbjct: 106 NSSMAVLAGVLKGDKETYEDFFMGMAHFKDIALAHILGFEQKKASGRHLCVEAIRHYSDF 285
Query: 924 CRVLAKLFPEYPV 962
++A+L+PEY V
Sbjct: 286 VNLVAELYPEYNV 324
Score = 23.5 bits (45), Expect(2) = 2e-011
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3 / +1
Query: 969 KCKDQVNPPVVGYKFTNQRLKDLGMDFVP 1055
K P ++ K +++L DLG++F P
Sbjct: 328 KIPTDTQPGLLRAKNASKKLIDLGLEFTP 414
>gb|CO515272.1|CO515272 s13dSG96H0900080_399409 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 32.2 bits (64), Expect = 0.16
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3 / +1
Query: 177 TVCVTGAGGFIASWLVKRLLEK 242
T+C+ GAGGFI S L ++L+ +
Sbjct: 193 TICMIGAGGFIGSHLCEKLMSE 258
>gb|CO512059.1|CO512059 s13dSG18D0600046_108438 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 594
Score = 29.9 bits (59), Expect = 0.79
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3 / +2
Query: 168 QGRTVCVTGAGGFIASWLVKRLLEKGY 248
Q +TV VTG G+I S V +LL G+
Sbjct: 242 QNKTVLVTGGAGYIGSHTVLQLLLGGF 322
>gb|CO512512.1|CO512512 s13dSG100H110009_114538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 595
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -1
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 325 GDEGGGVEGVIIGGDGEG 272
>gb|CO513683.1|CO513683 s13dSG17G0400024_140148 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 473
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -3
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 252 GDEGGGVEGVIIGGDGEG 199
>gb|CO514321.1|CO514321 s13dSG84B0100009_157304 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -2
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 325 GDEGGGVEGVIIGGDGEG 272
>gb|CO514652.1|CO514652 s13dSG46D0700062_327964 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 589
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -1
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 346 GDEGGGVEGVIIGGDGEG 293
>gb|CO514722.1|CO514722 s13dSG55C1200098_328104 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 530
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -3
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 321 GDEGGGVEGVIIGGDGEG 268
>gb|CO514756.1|CO514756 s13dSG55G0900072_328172 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 510
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -3
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 346 GDEGGGVEGVIIGGDGEG 293
>gb|CO514967.1|CO514967 s13dSG63F0500047_397439 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 421
Score = 29.0 bits (57), Expect = 1.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1 / -1
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGGVE + G+G G
Sbjct: 325 GDEGGGVEGVIIGGDGEG 272
>gb|CO511822.1|CO511822 s13dSG02D0800074_103544 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 470
Score = 28.1 bits (55), Expect = 2.8
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -1 / +3
Query: 1388 EIHCMHVWHLSGKHACRCMH 1329
+I C HVW++ ++C +H
Sbjct: 135 QISCRHVWNMGSCYSCHPLH 194
>gb|CO516304.1|CO516304 s13dSG69G1100086_445936 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 28.1 bits (55), Expect = 2.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3 / +2
Query: 180 VCVTGAGGFIASWLVKRLLEKGYTV 254
V VTG G+I S RLL++ Y V
Sbjct: 425 VLVTGGAGYIGSHATLRLLKESYRV 499
>gb|CO511902.1|CO511902 s13dSG05D0200026_103704 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 27.6 bits (54), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3 / +2
Query: 171 GRTVCVTGAGGFIASWLVKRLLEKGYTVRG 260
G +V VTGA GFI S + L +G V G
Sbjct: 329 GMSVLVTGAAGFIGSHVSLALKRRGDGVVG 418
>gb|CO512484.1|CO512484 s13dSG100E090006_114482 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 27.6 bits (54), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3 / +3
Query: 171 GRTVCVTGAGGFIASWLVKRLLEKGYTVRG 260
G +V VTGA GFI S + L +G V G
Sbjct: 39 GMSVLVTGAAGFIGSHVSLALKRRGDGVVG 128
>gb|CO512698.1|CO512698 s13dSG19E1000071_121322 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 27.6 bits (54), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3 / +1
Query: 171 GRTVCVTGAGGFIASWLVKRLLEKGYTVRG 260
G +V VTGA GFI S + L +G V G
Sbjct: 352 GMSVLVTGAAGFIGSHVSLALKRRGDGVVG 441
>gb|CO513016.1|CO513016 s13dSG09F0400031_121958 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 525
Score = 27.6 bits (54), Expect = 3.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1 / -2
Query: 422 GDRGGGVEDAVTAGEGLG 369
GD GGG+E + G+G G
Sbjct: 263 GDEGGGMEGVIIGGDGEG 210
>gb|CO515673.1|CO515673 s13dSG60D1000090_419495 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 27.6 bits (54), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3 / +2
Query: 171 GRTVCVTGAGGFIASWLVKRLLEKGYTVRG 260
G +V VTGA GFI S + L +G V G
Sbjct: 350 GMSVLVTGAAGFIGSHVSLALKRRGDGVVG 439
>gb|CO517056.1|CO517056 s13dSG31G0700054_468658 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 424
Score = 27.6 bits (54), Expect = 3.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2 / -2
Query: 1352 FLTSATHACNVSLWTIYIQ 1408
F S +ACN+ LW I+I+
Sbjct: 420 FXXSYLYACNIYLWNIHIK 364
>gb|CO512714.1|CO512714 s13dSG19G0500036_121354 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 26.7 bits (52), Expect = 7.3
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +1 / -2
Query: 1357 DKCHTCMQCISLDDLYTIL 1413
DKCH QC S+ D IL
Sbjct: 328 DKCHRSRQCHSMKDFNIIL 272
>gb|CO515296.1|CO515296 s13dSG48C0800066_417651 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 627
Score = 26.7 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2 / +1
Query: 985 TWSLHLVGTGYSGKSLARTR 926
TW + + G GY GKS R +
Sbjct: 349 TWRIQIYGNGYLGKSNPRNQ 408
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,990,926
Number of Sequences: 7669
Number of extensions: 98386
Number of successful extensions: 734
Number of sequences better than 10.0: 30
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 404542608
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)