TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511721.1|CO511721 s13dSG01D0100014_103342 Glandular tr... 28 1.4
gb|CO516933.1|CO516933 s13dSG58F0800073_468412 Glandular tr... 28 1.9
gb|CO517116.1|CO517116 s13dSG29F0600059_468778 Glandular tr... 28 1.9
gb|CO516856.1|CO516856 s13dSG98F0100011_447040 Glandular tr... 27 2.6
gb|CO512768.1|CO512768 s13dSG88D0900074_121462 Glandular tr... 26 4.9
gb|AF020269.1|AF020269 Medicago sativa chloroplast malate d... 26 4.9
gb|CO511724.1|CO511724 s13dSG01D0400042_103348 Glandular tr... 26 6.7
gb|L12461.1|ALFCOLINDA Medicago sativa clone pAcs2201 CAS15... 26 6.7
gb|L12462.1|ALFCOLINDB Medicago sativa clone pMSACIB CAS15 ... 26 6.7
gb|AF220456.1|AF220456 Medicago sativa cold acclimation res... 26 6.7
gb|AF220458.1|AF220458 Medicago sativa cold acclimation res... 26 6.7
gb|AF072932.1| Medicago sativa cold acclimation responsive ... 26 6.7
gb|CO512404.1|CO512404 s13dSG80E0600039_114322 Glandular tr... 25 9.3
gb|CO515920.1|CO515920 s13dSG91G1000082_421379 Glandular tr... 25 9.3
>gb|CO511721.1|CO511721 s13dSG01D0100014_103342 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 391
Score = 28.1 bits (55), Expect = 1.4
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2 / -1
Query: 404 PASRHRQISAHCRVCVCTH 348
P R +QI H +VC CTH
Sbjct: 139 PIIRLKQILVHPKVCKCTH 83
>gb|CO516933.1|CO516933 s13dSG58F0800073_468412 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 459
Score = 27.6 bits (54), Expect = 1.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2 / +2
Query: 419 IHGRRPASRHRQISAHCRVCVCTHAYSS*IYPRTT 315
+HG R +R+R +H RVC+ H Y + RT+
Sbjct: 251 VHGFRYHNRNRGRCSHNRVCLN*HQYYCH*FSRTS 355
>gb|CO517116.1|CO517116 s13dSG29F0600059_468778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 487
Score = 27.6 bits (54), Expect = 1.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2 / +2
Query: 221 SSTLGCLFPCYTPSSLAPFPFVC 153
+S +GC F C P S+A F F C
Sbjct: 230 TSIVGCGFHCCRPDSVARFIF*C 298
>gb|CO516856.1|CO516856 s13dSG98F0100011_447040 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 459
Score = 27.2 bits (53), Expect = 2.6
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +1 / -2
Query: 361 HTRQCAEIWRWREAGR 408
H Q IWRW++ GR
Sbjct: 164 HPTQLRNIWRWKKEGR 117
>gb|CO512768.1|CO512768 s13dSG88D0900074_121462 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 590
Score = 26.3 bits (51), Expect = 4.9
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +1 / -3
Query: 358 THTRQCAEIWRWREAGRRPWM 420
T C WR R A RRP M
Sbjct: 267 TEPADCVATWRLRPANRRPAM 205
>gb|AF020269.1|AF020269 Medicago sativa chloroplast malate dehydrogenase precursor (p1mdh)
mRNA, nuclear gene encoding chloroplast protein, complete
cds
Length = 2050
Score = 26.3 bits (51), Expect = 4.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1 / +2
Query: 513 RSLLR*PKSVRPAGRPRAPHIC 448
R +LR* RP G P+ H+C
Sbjct: 1670 RHILR*LCQKRPCGTPKVIHVC 1735
>gb|CO511724.1|CO511724 s13dSG01D0400042_103348 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 485
Score = 25.8 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / +3
Query: 367 RQCAEIWRWREAGRRPW 417
R+ IW WR G PW
Sbjct: 288 RRATWIWSWRPQGGIPW 338
>gb|L12461.1|ALFCOLINDA Medicago sativa clone pAcs2201 CAS15 (cas15A) mRNA, complete cds
Length = 690
Score = 25.8 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / +2
Query: 367 RQCAEIWRWREAGRRPW 417
R+ IW WR G PW
Sbjct: 236 RRATWIWSWRPQGGIPW 286
>gb|L12462.1|ALFCOLINDB Medicago sativa clone pMSACIB CAS15 (cas15B) mRNA, complete cds
Length = 736
Score = 25.8 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / +2
Query: 367 RQCAEIWRWREAGRRPW 417
R+ IW WR G PW
Sbjct: 236 RRATWIWSWRPQGGIPW 286
>gb|AF220456.1|AF220456 Medicago sativa cold acclimation responsive protein BudCAR4
(BUDCAR4) mRNA, complete cds
Length = 686
Score = 25.8 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / +3
Query: 367 RQCAEIWRWREAGRRPW 417
R+ IW WR G PW
Sbjct: 219 RRATWIWSWRPQGGIPW 269
>gb|AF220458.1|AF220458 Medicago sativa cold acclimation responsive protein BudCAR6
(BUDCAR6) mRNA, complete cds
Length = 694
Score = 25.8 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / +3
Query: 367 RQCAEIWRWREAGRRPW 417
R+ IW WR G PW
Sbjct: 210 RRATWIWSWRPQGGIPW 260
>gb|AF072932.1| Medicago sativa cold acclimation responsive protein CAR1 (CAR1)
mRNA, complete cds
Length = 731
Score = 25.8 bits (50), Expect = 6.7
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1 / +1
Query: 367 RQCAEIWRWREAGRRPW 417
R+ IW WR G PW
Sbjct: 268 RRATWIWSWRPQGGIPW 318
>gb|CO512404.1|CO512404 s13dSG80E0600039_114322 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 25.4 bits (49), Expect = 9.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +3 / -1
Query: 411 SMDGERQRARRCCIYAARVAGRPDGRTWAS 500
S G R+ RR AAR GR GRT A+
Sbjct: 304 SAKGSRRARRRWRRRAARFRGRSRGRTAAT 215
>gb|CO515920.1|CO515920 s13dSG91G1000082_421379 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 577
Score = 25.4 bits (49), Expect = 9.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2 / -1
Query: 32 SSTRGWSVVCQGGNNSIQ 85
SS GW++VC G++ Q
Sbjct: 400 SSINGWTLVCCSGSSDFQ 347
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 4,367,681
Number of Sequences: 7669
Number of extensions: 44549
Number of successful extensions: 602
Number of sequences better than 10.0: 14
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 198264580
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)