TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO517114.1|CO517114 s13dSG29F0300031_468774 Glandular tr... 197 5e-051
emb|AX776636.1| Sequence 5 from Patent WO02102841 124 4e-049
emb|AJ418368.1|MSA418368 Medicago sativa mRNA for nodulatio... 124 4e-049
emb|AJ418377.1|MSA418377 Medicago sativa mRNA for nodulatio... 119 1e-047
emb|AX776635.1| Sequence 4 from Patent WO02102841 119 1e-047
gb|AY563141.1| Medicago sativa calcium/calmodulin-regulated... 92 1e-045
gb|CO511959.1|CO511959 s13dSG07B0300029_103818 Glandular tr... 105 9e-036
gb|CO511940.1|CO511940 s13dSG05G1200100_103780 Glandular tr... 92 4e-034
gb|CO512543.1|CO512543 s13dSG08D0400030_121012 Glandular tr... 75 6e-033
gb|CO512977.1|CO512977 s13dSG09B0200013_121880 Glandular tr... 65 3e-029
gb|CO515446.1|CO515446 s13dSG50H0600060_417951 Glandular tr... 69 6e-027
>gb|CO517114.1|CO517114 s13dSG29F0300031_468774 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 496
Score = 197 bits (425), Expect = 5e-051
Identities = 79/108 (73%), Positives = 91/108 (84%)
Frame = +1 / +2
Query: 307 NTEGDALYSLRQSLIDTNNVLQSWDSTLVNPCTWFHVTCNSDNSVIRVDLGNAQLSGVLV 486
N+EGDALY+L++SL D +NVLQSWD TLV+PCTWFHVTCN DN V RVDLGN+ LSG LV
Sbjct: 113 NSEGDALYTLKRSLTDPDNVLQSWDPTLVSPCTWFHVTCNQDNRVTRVDLGNSNLSGHLV 292
Query: 487 PQLGQLKNLQYLELYSNKISGAIPPELGNLTNLVSLDLYMNNFSGNIP 630
P+LG+L++LQYLELY N I G IP ELGNL +LVSLDLY NN SG IP
Sbjct: 293 PELGKLEHLQYLELYKNNIQGTIPKELGNLKSLVSLDLYNNNISGTIP 436
Score = 133 bits (286), Expect = 5e-032
Identities = 65/117 (55%), Positives = 80/117 (68%)
Frame = -1 / -2
Query: 653 FNRFPRLSGILPEKLFIYRSKLTRLVRFPSSGGIAPLILLL*SSKYWRFFS*PSCGTRTP 474
F FP G++P+ L +Y+SKLTRL+RFPSS GI P +L L +S+Y R S PS GT+ P
Sbjct: 459 FFNFPNEGGMVPDMLLLYKSKLTRLLRFPSSLGIVP*MLFLYNSRY*RCSSFPSSGTKCP 280
Query: 473 DNCAFPRSTLITLLSLLHVT*NHVHGLTRVESQLCKTLFVSIKLCRRLYRASPSVLA 303
D PRST +T LS LHVT*N V GLTRV SQL +TL S++L + RASPS A
Sbjct: 279 DRLELPRSTRVTRLSWLHVT*NQVQGLTRVGSQL*RTLSGSVRLRLSV*RASPSEFA 109
>emb|AX776636.1| Sequence 5 from Patent WO02102841
Length = 3339
Score = 124 bits (266), Expect(4) = 4e-049
Identities = 52/122 (42%), Positives = 76/122 (62%)
Frame = +1 / +3
Query: 1219 RLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRE 1398
+++ + G +F E+ ++S H NL+ L G+C +++LVYP+M+NGS+ RL
Sbjct: 2115 KVRSSTSTQGTXEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYG 2294
Query: 1399 RQASEPPLKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL 1578
+ L W TR IALG+ARGL+YLH +IHRDVK++NILLD+ A V DFG
Sbjct: 2295 EASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGF 2474
Query: 1579 AK 1584
+K
Sbjct: 2475 SK 2480
Score = 64.6 bits (135), Expect(4) = 4e-049
Identities = 23/52 (44%), Positives = 39/52 (75%)
Frame = +1 / +3
Query: 1600 DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLAR 1755
D++V+ VRGT G++ PEY T + SEK+DVF +G++LLE+++G+ ++ R
Sbjct: 2499 DSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR 2654
Score = 39.0 bits (79), Expect(4) = 4e-049
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1 / +3
Query: 1780 LLDWVKGLLKEKKVEMLVDPDLQNAYEEIEVENLIQVALLCTQ 1908
L++W K ++ KV+ +VDP ++ Y + +++VAL C +
Sbjct: 2673 LVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLE 2801
Score = 34.0 bits (68), Expect(4) = 4e-049
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1 / +3
Query: 520 LELYSNKISGAIPPELGNLTNLVSLDLYMNNFSGNIP 630
L+L SN + GAIP + +TNL L+L N F P
Sbjct: 1476 LDLSSNNLKGAIPYFVTKMTNLQILNLSHNQFDSLFP 1586
>emb|AJ418368.1|MSA418368 Medicago sativa mRNA for nodulation receptor kinase (nork gene), wild
type allele DMI2
Length = 3339
Score = 124 bits (266), Expect(4) = 4e-049
Identities = 52/122 (42%), Positives = 76/122 (62%)
Frame = +1 / +3
Query: 1219 RLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRE 1398
+++ + G +F E+ ++S H NL+ L G+C +++LVYP+M+NGS+ RL
Sbjct: 2115 KVRSSTSTQGTXEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYG 2294
Query: 1399 RQASEPPLKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL 1578
+ L W TR IALG+ARGL+YLH +IHRDVK++NILLD+ A V DFG
Sbjct: 2295 EASKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDQSMCAKVADFGF 2474
Query: 1579 AK 1584
+K
Sbjct: 2475 SK 2480
Score = 64.6 bits (135), Expect(4) = 4e-049
Identities = 23/52 (44%), Positives = 39/52 (75%)
Frame = +1 / +3
Query: 1600 DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLAR 1755
D++V+ VRGT G++ PEY T + SEK+DVF +G++LLE+++G+ ++ R
Sbjct: 2499 DSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR 2654
Score = 39.0 bits (79), Expect(4) = 4e-049
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1 / +3
Query: 1780 LLDWVKGLLKEKKVEMLVDPDLQNAYEEIEVENLIQVALLCTQ 1908
L++W K ++ KV+ +VDP ++ Y + +++VAL C +
Sbjct: 2673 LVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLE 2801
Score = 34.0 bits (68), Expect(4) = 4e-049
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1 / +3
Query: 520 LELYSNKISGAIPPELGNLTNLVSLDLYMNNFSGNIP 630
L+L SN + GAIP + +TNL L+L N F P
Sbjct: 1476 LDLSSNNLKGAIPYFVTKMTNLQILNLSHNQFDSLFP 1586
>emb|AJ418377.1|MSA418377 Medicago sativa mRNA for nodulation receptor kinase (nork gene),
mutant allele nn1
Length = 3337
Score = 119 bits (255), Expect(4) = 1e-047
Identities = 50/122 (40%), Positives = 75/122 (61%)
Frame = +1 / +1
Query: 1219 RLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRE 1398
+++ + G +F E+ ++S H NL+ L G+C +++LVYP+M+NGS+ RL
Sbjct: 2113 KVRSSTSTQGTKEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYG 2292
Query: 1399 RQASEPPLKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL 1578
+ L W TR IALG+ RGL+ LH P +IHRD+K++NILLD+ A V DFG
Sbjct: 2293 EASKRKILDWPTRLSIALGAPRGLA*LHTFPGPSVIHRDLKSSNILLDQSMCAKVADFGF 2472
Query: 1579 AK 1584
+K
Sbjct: 2473 SK 2478
Score = 64.6 bits (135), Expect(4) = 1e-047
Identities = 23/52 (44%), Positives = 39/52 (75%)
Frame = +1 / +1
Query: 1600 DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLAR 1755
D++V+ VRGT G++ PEY T + SEK+DVF +G++LLE+++G+ ++ R
Sbjct: 2497 DSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR 2652
Score = 39.0 bits (79), Expect(4) = 1e-047
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1 / +1
Query: 1780 LLDWVKGLLKEKKVEMLVDPDLQNAYEEIEVENLIQVALLCTQ 1908
L++W K ++ KV+ +VDP ++ Y + +++VAL C +
Sbjct: 2671 LVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLE 2799
Score = 34.0 bits (68), Expect(4) = 1e-047
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1 / +1
Query: 520 LELYSNKISGAIPPELGNLTNLVSLDLYMNNFSGNIP 630
L+L SN + GAIP + +TNL L+L N F P
Sbjct: 1474 LDLSSNNLKGAIPYFVTKMTNLQILNLSHNQFDSLFP 1584
>emb|AX776635.1| Sequence 4 from Patent WO02102841
Length = 3378
Score = 119 bits (255), Expect(4) = 1e-047
Identities = 50/122 (40%), Positives = 75/122 (61%)
Frame = +1 / +1
Query: 1219 RLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRE 1398
+++ + G +F E+ ++S H NL+ L G+C +++LVYP+M+NGS+ RL
Sbjct: 2134 KVRSSTSTQGTKEFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYG 2313
Query: 1399 RQASEPPLKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGL 1578
+ L W TR IALG+ RGL+ LH P +IHRD+K++NILLD+ A V DFG
Sbjct: 2314 EASKRKILDWPTRLSIALGAPRGLA*LHTFPGPSVIHRDLKSSNILLDQSMCAKVADFGF 2493
Query: 1579 AK 1584
+K
Sbjct: 2494 SK 2499
Score = 64.6 bits (135), Expect(4) = 1e-047
Identities = 23/52 (44%), Positives = 39/52 (75%)
Frame = +1 / +1
Query: 1600 DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLAR 1755
D++V+ VRGT G++ PEY T + SEK+DVF +G++LLE+++G+ ++ R
Sbjct: 2518 DSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKR 2673
Score = 39.0 bits (79), Expect(4) = 1e-047
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1 / +1
Query: 1780 LLDWVKGLLKEKKVEMLVDPDLQNAYEEIEVENLIQVALLCTQ 1908
L++W K ++ KV+ +VDP ++ Y + +++VAL C +
Sbjct: 2692 LVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLE 2820
Score = 34.0 bits (68), Expect(4) = 1e-047
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +1 / +1
Query: 520 LELYSNKISGAIPPELGNLTNLVSLDLYMNNFSGNIP 630
L+L SN + GAIP + +TNL L+L N F P
Sbjct: 1495 LDLSSNNLKGAIPYFVTKMTNLQILNLSHNQFDSLFP 1605
>gb|AY563141.1| Medicago sativa calcium/calmodulin-regulated receptor-like kinase
mRNA, complete cds
Length = 1798
Score = 92.0 bits (195), Expect(3) = 1e-045
Identities = 38/99 (38%), Positives = 61/99 (61%)
Frame = +1 / +1
Query: 1096 FSLRELQVATDTFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVE 1275
F+ E+ +T FS+ + +G GGFG VY+G+L DG++VAVKR K+E +F+ E+
Sbjct: 526 FTFEEIYKSTAKFSSDNQIGEGGFGTVYRGKLNDGTIVAVKRAKKEALQSHLYEFKNEIY 705
Query: 1276 MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRL 1392
+S H NL+RL G+ E+L++ Y+ NG++ L
Sbjct: 706 TLSKIEHLNLVRLYGYLEHGDEKLIIVEYVGNGNLTEHL 822
Score = 62.8 bits (131), Expect(3) = 1e-045
Identities = 21/44 (47%), Positives = 37/44 (84%)
Frame = +1 / +1
Query: 1603 THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQ 1734
TH++T V+GT G++ PEYL T + +EK+DV+ +G++L+E++TG+
Sbjct: 1030 THISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGR 1161
Score = 62.8 bits (131), Expect(3) = 1e-045
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +1 / +1
Query: 1435 RRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMD 1593
R IA+ A ++YLH + D IIHRD+KA+NIL+ E A V DFG A+L +
Sbjct: 859 RLDIAIDIAHAITYLHMYTDNPIIHRDIKASNILISENLRAKVADFGFARLSE 1017
>gb|CO511959.1|CO511959 s13dSG07B0300029_103818 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 596
Score = 105 bits (224), Expect(3) = 9e-036
Identities = 42/89 (47%), Positives = 63/89 (70%)
Frame = +1 / +1
Query: 1501 IIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSE 1680
++HRDVK+ NILLDE+F V DFGL++L THV+TA +GT G++ PEY + ++
Sbjct: 310 VMHRDVKSNNILLDEKFHVKVADFGLSRLFPNDVTHVSTAPQGTPGYVDPEYYQCYQLTD 489
Query: 1681 KTDVFGYGIMLLELITGQRAFDLARLAND 1767
K+D + +G++L+ELI+ RA D+ R ND
Sbjct: 490 KSDAYSFGVVLVELISSLRAVDITRHRND 576
Score = 50.9 bits (105), Expect(3) = 9e-036
Identities = 23/48 (47%), Positives = 30/48 (62%)
Frame = +1 / +1
Query: 1339 ERLLVYPYMANGSVASRLRERQASEPPLKWETRRRIALGSARGLSYLH 1482
E LLVY Y++NG+VA L ++S L W R IAL +A L+YLH
Sbjct: 157 ELLLVYEYISNGTVADHLHGDRSSSCLLPWSVRLDIALETAEALAYLH 300
Score = 28.0 bits (55), Expect(3) = 9e-036
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1 / +1
Query: 1255 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 1353
QF EVE+++ H+NL+ L G + LL+
Sbjct: 70 QFMNEVEILARLRHKNLVTLYGCTSKHSRELLL 168
>gb|CO511940.1|CO511940 s13dSG05G1200100_103780 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 595
Score = 91.6 bits (194), Expect(2) = 4e-034
Identities = 35/72 (48%), Positives = 50/72 (69%)
Frame = +1 / +1
Query: 1372 GSVASRLRERQASEPPLKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEF 1551
GS+ + L + + PL W TR +IA G+ARGL YLHD P +I+RD+K +NILL E++
Sbjct: 4 GSLENHLHDLSPGQKPLDWNTRMKIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDY 183
Query: 1552 EAVVGDFGLAKL 1587
+ + DFGLAK+
Sbjct: 184 HSKLSDFGLAKV 219
Score = 69.2 bits (145), Expect(2) = 4e-034
Identities = 27/59 (45%), Positives = 42/59 (71%)
Frame = +1 / +1
Query: 1603 THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVM 1779
THV+T V GT G+ AP+Y TG+ + K+D++ G+ LLELITG++A D R A + +++
Sbjct: 238 THVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSIGVALLELITGRKAIDHRRPAKEQNLV 414
>gb|CO512543.1|CO512543 s13dSG08D0400030_121012 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 611
Score = 75.1 bits (158), Expect(3) = 6e-033
Identities = 28/54 (51%), Positives = 39/54 (72%)
Frame = +1 / +1
Query: 1420 LKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA 1581
+ W R ++AL +ARG+ YLH + P IIHRD+K +NILLD ++ A V DFGL+
Sbjct: 283 MSWNGRIKVALDAARGIEYLHKYAQPPIIHRDIKTSNILLDSKWVAKVSDFGLS 444
Score = 50.4 bits (104), Expect(3) = 6e-033
Identities = 17/48 (35%), Positives = 33/48 (68%)
Frame = +1 / +1
Query: 1597 KDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRA 1740
+++H++ GT+G++ PEY + K+DV+ +G+ LLEL++G +A
Sbjct: 463 EESHLSLLAAGTVGYMDPEYYRLQYLTSKSDVYSFGVXLLELLSGYKA 606
Score = 49.1 bits (101), Expect(3) = 6e-033
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +1 / +1
Query: 1258 FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRLRERQAS 1410
F E+E +S H+NL++L GF R+LVY YM NGS+ L + Q S
Sbjct: 124 FVNELESLSRLHHKNLVKLLGFYEDKNGRILVYEYMNNGSLNDHLHKFQTS 276
>gb|CO512977.1|CO512977 s13dSG09B0200013_121880 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 65.0 bits (136), Expect(3) = 3e-029
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +1 / +1
Query: 1417 PLKWETRRRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKL 1587
PL W R +I G+A+GL YLH+ K +H D+K +NILL + + DFGL +L
Sbjct: 172 PLTWSDRLKIMKGTAKGLVYLHEFSPKKYVHGDLKPSNILLGHDMTPYISDFGLGRL 342
Score = 51.3 bits (106), Expect(3) = 3e-029
Identities = 21/46 (45%), Positives = 30/46 (65%)
Frame = +1 / +1
Query: 1255 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASRL 1392
+FQTEVE I H N+ LR + + E+LL+Y Y+ NGS+AS +
Sbjct: 4 EFQTEVEAIGKLRHPNIATLRAYYWSVDEKLLIYDYIPNGSLASAI 141
Score = 45.9 bits (94), Expect(3) = 3e-029
Identities = 18/33 (54%), Positives = 25/33 (75%)
Frame = +1 / +1
Query: 1636 GHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQ 1734
G+ APE L K S+K DV+ YG++LLE+ITG+
Sbjct: 457 GYQAPEALKVVKPSQKWDVYSYGVILLEMITGR 555
>gb|CO515446.1|CO515446 s13dSG50H0600060_417951 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 531
Score = 68.7 bits (144), Expect(2) = 6e-027
Identities = 29/92 (31%), Positives = 53/92 (57%)
Frame = +1 / +3
Query: 1627 GTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLL 1806
G +G+IAPEY ST +S K DV+G+G++LLEL+TG + ++ + + L+DWV
Sbjct: 198 GELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGCKPLEVNNIDEEFKGNLVDWVNMHS 377
Query: 1807 KEKKVEMLVDPDLQNAYEEIEVENLIQVALLC 1902
+++ +D + + E+ +++A C
Sbjct: 378 SSGRLKDCIDRSISGKGNDEEILQFLKIASNC 473
Score = 67.8 bits (142), Expect(2) = 6e-027
Identities = 28/50 (56%), Positives = 39/50 (78%)
Frame = +1 / +3
Query: 1441 RIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM 1590
RI LG+ARGL++LH C P II +++ + IL+DEEF+A + DFGLA+LM
Sbjct: 9 RIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLM 158
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.317 0.134 0.393
Matrix: BLOSUM62
Number of Hits to DB: 15,260,901
Number of Sequences: 7669
Number of extensions: 213526
Number of successful extensions: 1750
Number of sequences better than 1.0e-020: 14
length of database: 1,248,568
effective HSP length: 46
effective length of database: 895,794
effective search space used: 530310048
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.6 bits)