TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4CL
(1986 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511788.1|CO511788 s13dSG02A1000081_103476 Glandular tr... 71 6e-013
gb|CO517215.1|CO517215 s13dSG32B0400041_486026 Glandular tr... 32 3e-007
gb|CO516455.1|CO516455 s13dSG28B0200013_446238 Glandular tr... 27 0.093
gb|CO511853.1|CO511853 s13dSG02G0400036_103606 Glandular tr... 26 0.17
gb|AF220457.1|AF220457 Medicago sativa cold acclimation res... 27 0.29
gb|CO515197.1|CO515197 s13dSG62E1000083_399259 Glandular tr... 27 0.30
gb|CO515382.1|CO515382 s13dSG49E0600051_417823 Glandular tr... 24 0.54
gb|CO516077.1|CO516077 s13dSG64H0800076_445482 Glandular tr... 24 0.54
gb|CO516589.1|CO516589 s13dSG57H1100094_446506 Glandular tr... 24 0.54
gb|CO514767.1|CO514767 s13dSG55H1200104_328194 Glandular tr... 24 0.54
gb|AF195801.1|AF195801 Medicago sativa isoflavone synthase ... 30 0.79
gb|AF195802.1|AF195802 Medicago sativa isoflavone synthase ... 30 0.79
gb|CO511825.1|CO511825 s13dSG02D1100094_103550 Glandular tr... 24 1.3
gb|CO514594.1|CO514594 s13dSG42F0500047_327848 Glandular tr... 24 1.3
gb|CO516011.1|CO516011 s13dSG61H0600060_445350 Glandular tr... 25 1.9
gb|CO515770.1|CO515770 s13dSG77F0900079_419689 Glandular tr... 27 2.0
gb|CO514758.1|CO514758 s13dSG55G1100088_328176 Glandular tr... 29 2.0
gb|CO515543.1|CO515543 s13dSG53C0400034_418145 Glandular tr... 29 2.8
gb|CO515981.1|CO515981 s13dSG61E0800067_445290 Glandular tr... 29 2.8
gb|CO513001.1|CO513001 s13dSG09D0800062_121928 Glandular tr... 28 3.9
gb|CO513406.1|CO513406 s13dSG38F0900075_129976 Glandular tr... 28 3.9
gb|CO516409.1|CO516409 s13dSG27D0600048_446146 Glandular tr... 28 3.9
gb|AJ410094.1|AJ410094 AJ410094 Medicago sativa library (Ka... 28 5.3
gb|CO517011.1|CO517011 s13dSG31A0200005_468568 Glandular tr... 28 5.3
gb|CO512261.1|CO512261 s13dSG03H0500044_114036 Glandular tr... 25 5.8
gb|CO513856.1|CO513856 s13dSG73D0800062_156374 Glandular tr... 27 7.3
gb|CO514696.1|CO514696 s13dSG55A0200017_328052 Glandular tr... 27 7.3
emb|AJ575100.1|MSA575100 Medicago sativa mRNA for putative ... 27 7.3
>gb|CO511788.1|CO511788 s13dSG02A1000081_103476 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 582
Score = 70.7 bits (148), Expect = 6e-013
Identities = 28/59 (47%), Positives = 36/59 (61%)
Frame = +1 / +3
Query: 1321 NQPGEICIRGKQLMKGYLNNPEATAKTIDSEGWLHTGDIGYVDDGDEIFIVDRLKELIK 1497
N GEIC+RG + +GY + T + ID EGWLHTGDIG G + I+DR K + K
Sbjct: 198 NPRGEICVRGPIIFQGYYKDEAQTREVIDEEGWLHTGDIGTWIAGGRLKIIDRKKNIFK 374
Score = 32.7 bits (65), Expect = 0.16
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2 / -3
Query: 1454 PSSTYPMSPVCSHPSESMVFAV 1389
P+ P+SPVC+HPS SM V
Sbjct: 331 PAIHVPISPVCNHPSSSMTSLV 266
Score = 27.2 bits (53), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1 / -2
Query: 1437 NVSGVQPPLRVDGLRRCLRVVEVPFHQLLAPDAN 1336
N+SG+QP L +D R + + PD N
Sbjct: 314 NISGMQPSLFIDDFSRLSFIFVITLKNNWTPDTN 213
>gb|CO517215.1|CO517215 s13dSG32B0400041_486026 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 615
Score = 32.2 bits (64), Expect(4) = 3e-007
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1 / -1
Query: 1411 EGWLHTGDIGYVDDGDEIFIVDRLKELIKYKGFQVAPA 1524
+GW HTGDIG + I+ + K+ K K A A
Sbjct: 156 DGWFHTGDIGEWQPNGAMKIIVKKKKKKKKKNMSAASA 43
Score = 30.4 bits (60), Expect(4) = 3e-007
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1 / -1
Query: 1330 GEICIRGKQLMKGYLNNPEATAKTI 1404
GEIC+RG L GY + T + I
Sbjct: 234 GEICLRGNSLFSGYHKRQDLTQEVI 160
Score = 24.9 bits (48), Expect(4) = 3e-007
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +1 / -1
Query: 1078 VRMVISGAAPMGKELQDLLR 1137
VR+++SGAAP+ +++ LR
Sbjct: 477 VRILLSGAAPLPIHVEECLR 418
Score = 22.1 bits (42), Expect(4) = 3e-007
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1 / -1
Query: 1153 AVLGQGYGMTEA 1188
+ L QGYG+TE+
Sbjct: 405 STLSQGYGLTES 370
>gb|CO516455.1|CO516455 s13dSG28B0200013_446238 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 466
Score = 27.2 bits (53), Expect(2) = 0.093
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2 / +2
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++LS S+ SPSS+ +SPV + P S
Sbjct: 122 LMFVATLSVSSTIAQSPSSSPTISPVATPPKSS 220
Score = 23.5 bits (45), Expect(2) = 0.093
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2 / +2
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT QAP + N + A
Sbjct: 341 DSPAVSPAVTPSSISTTPSQAPSPSDNSAAA 433
>gb|CO511853.1|CO511853 s13dSG02G0400036_103606 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 26.3 bits (51), Expect(2) = 0.17
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -2 / +1
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L L+++L S+ SPSS+ +SPV + P S
Sbjct: 127 LMLVATLLVSSTIAQSPSSSPTISPVATPPKSS 225
Score = 23.5 bits (45), Expect(2) = 0.17
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2 / +1
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT QAP + N + A
Sbjct: 346 DSPAVSPAVTPSSISTTPSQAPSPSDNSAAA 438
>gb|AF220457.1|AF220457 Medicago sativa cold acclimation responsive protein BudCAR5
(BUDCAR5) mRNA, complete cds
Length = 678
Score = 26.7 bits (52), Expect(2) = 0.29
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / -2
Query: 57 PAPPTRPEAASLLSPA 104
P PPTRP + L SPA
Sbjct: 206 PTPPTRP*CSPLCSPA 159
Score = 22.1 bits (42), Expect(2) = 0.29
Identities = 5/12 (41%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 16 CHIHPSLHIAPI 51
C +H +H+AP+
Sbjct: 262 CGLHDQIHVAPL 227
>gb|CO515197.1|CO515197 s13dSG62E1000083_399259 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 483
Score = 26.7 bits (52), Expect(2) = 0.30
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3 / -2
Query: 57 PAPPTRPEAASLLSPA 104
P PPTRP + L SPA
Sbjct: 266 PTPPTRP*CSPLCSPA 219
Score = 22.1 bits (42), Expect(2) = 0.30
Identities = 5/12 (41%), Positives = 9/12 (75%)
Frame = +1 / -3
Query: 16 CHIHPSLHIAPI 51
C +H +H+AP+
Sbjct: 322 CGLHDQIHVAPL 287
>gb|CO515382.1|CO515382 s13dSG49E0600051_417823 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 24.4 bits (47), Expect(2) = 0.54
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / +2
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++L S+ SPSS+ +SPV + P S
Sbjct: 44 LMFVATLLVSSTIAQSPSSSPTISPVATPPKSS 142
Score = 23.5 bits (45), Expect(2) = 0.54
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2 / +2
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT QAP + N + A
Sbjct: 263 DSPAVSPAVTPSSISTTPSQAPSPSDNSAAA 355
>gb|CO516077.1|CO516077 s13dSG64H0800076_445482 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 24.4 bits (47), Expect(2) = 0.54
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / +1
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++L S+ SPSS+ +SPV + P S
Sbjct: 127 LMFVATLLVSSTIAQSPSSSPTISPVATPPKSS 225
Score = 23.5 bits (45), Expect(2) = 0.54
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2 / +1
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT QAP + N + A
Sbjct: 346 DSPAVSPAVTPSSISTTPSQAPSPSDNSAAA 438
>gb|CO516589.1|CO516589 s13dSG57H1100094_446506 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 24.4 bits (47), Expect(2) = 0.54
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / +3
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++L S+ SPSS+ +SPV + P S
Sbjct: 108 LMFVATLLVSSTIAQSPSSSPTISPVATPPKSS 206
Score = 23.5 bits (45), Expect(2) = 0.54
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2 / +3
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT QAP + N + A
Sbjct: 327 DSPAVSPAVTPSSISTTPSQAPSPSDNSAAA 419
>gb|CO514767.1|CO514767 s13dSG55H1200104_328194 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 502
Score = 24.4 bits (47), Expect(2) = 0.54
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / +1
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++L S+ SPSS+ +SPV + P S
Sbjct: 127 LMFVATLLVSSTIAQSPSSSPTISPVATPPKSS 225
Score = 23.5 bits (45), Expect(2) = 0.54
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -2 / +1
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT QAP + N + A
Sbjct: 346 DSPAVSPAVTPSSISTTPSQAPSPSDNSAAA 438
>gb|AF195801.1|AF195801 Medicago sativa isoflavone synthase 2 (ifs2) mRNA, partial cds
Length = 1501
Score = 30.4 bits (60), Expect = 0.79
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2 / +2
Query: 1184 SVIP*PCPSTARGSLARSRSCSSLPMGAAPEMTMRTDERSWRSMASLL 1041
S P P P+ + S + R+ SSL +P T R +++W + SLL
Sbjct: 41 STSPSPKPTKPKASSSLHRTPSSLKRQTSPLRTHRPLQKTWSLILSLL 184
>gb|AF195802.1|AF195802 Medicago sativa isoflavone synthase 3 (ifs3) mRNA, partial cds
Length = 1501
Score = 30.4 bits (60), Expect = 0.79
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2 / +2
Query: 1184 SVIP*PCPSTARGSLARSRSCSSLPMGAAPEMTMRTDERSWRSMASLL 1041
S P P P+ + S + R+ SSL +P T R +++W + SLL
Sbjct: 41 STSPSPKPTKPKASSSLHRTPSSLKRQTSPLRTHRPLQKTWSLILSLL 184
>gb|CO511825.1|CO511825 s13dSG02D1100094_103550 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 591
Score = 24.4 bits (47), Expect(2) = 1.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / +1
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++L S+ SPSS+ +SPV + P S
Sbjct: 127 LMFVATLLVSSTIAQSPSSSPTISPVATPPKSS 225
Score = 22.1 bits (42), Expect(2) = 1.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2 / +1
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT +AP + N + A
Sbjct: 346 DSPALSPAVTPSSISTTPSEAPSPSDNSAAA 438
>gb|CO514594.1|CO514594 s13dSG42F0500047_327848 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 24.4 bits (47), Expect(2) = 1.3
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2 / +1
Query: 1502 LYLMSSLSRSTMKISSPSSTYPMSPVCSHPSES 1404
L +++L S+ SPSS+ +SPV + P S
Sbjct: 127 LMFVATLLVSSTIAQSPSSSPTISPVATPPKSS 225
Score = 22.1 bits (42), Expect(2) = 1.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2 / +1
Query: 1310 DSPVSGSMIFSSAFLTTVPQAPDFTGNGSLA 1218
DSP + S+ TT +AP + N + A
Sbjct: 346 DSPALSPAVTPSSISTTPSEAPSPSDNSAAA 438
>gb|CO516011.1|CO516011 s13dSG61H0600060_445350 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 552
Score = 24.9 bits (48), Expect(2) = 1.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -2 / +1
Query: 1946 NMSCTWLTASCLHRFLY 1896
N+ CTW+ + LH F Y
Sbjct: 223 NLFCTWVM*NMLHEF*Y 273
Score = 24.4 bits (47), Expect(2) = 1.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Frame = -2 / +1
Query: 68 WWSWTWIGAMCKDGC 24
WW+ W G+ C C
Sbjct: 280 WWT*WWFGSSCIAAC 324
>gb|CO515770.1|CO515770 s13dSG77F0900079_419689 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 26.7 bits (52), Expect(2) = 2.0
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -2 / -1
Query: 1688 TTCFATYCLISSSVIPEPP 1632
++C +T+C ++S+ P PP
Sbjct: 518 SSCRSTHCRVTSATTPSPP 462
Score = 22.6 bits (43), Expect(2) = 2.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2 / -1
Query: 827 LSPSTSCATLV 795
L PSTSC TL+
Sbjct: 251 LIPSTSCCTLI 219
>gb|CO514758.1|CO514758 s13dSG55G1100088_328176 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 29.0 bits (57), Expect = 2.0
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -2 / -1
Query: 551 MTTVAPEAAACLAISGGVWSGLAVVAAAPRREHARNASANSTEFGRSSITVPP 393
+ V+ A+ A S VW ++A P E A +NST SS VPP
Sbjct: 513 LALVSSRTASDRAASPLVWYFTVILAMDPPSEPATTLVSNSTFXKLSSNPVPP 355
>gb|CO515543.1|CO515543 s13dSG53C0400034_418145 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 28.6 bits (56), Expect = 2.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1 / -3
Query: 1135 RAKLPRAVLGQGYGMTEAGPVLSMCMAF 1218
RAK+P A+ Q AGPVL+ ++F
Sbjct: 322 RAKVPAALFKQLQAALRAGPVLAAALSF 239
>gb|CO515981.1|CO515981 s13dSG61E0800067_445290 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 531
Score = 28.6 bits (56), Expect = 2.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1 / +3
Query: 1618 FVVASGGSGITEDEIKQYVAKQVVFYKRLHKIFFVEAIPKAP 1743
++ +GGSGI E Q Q+VF ++ F++ I P
Sbjct: 291 YLAVTGGSGIFEGVKGQVKLHQIVFPFKIFYTFYLRGIKDLP 416
>gb|CO513001.1|CO513001 s13dSG09D0800062_121928 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 28.1 bits (55), Expect = 3.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +2 / +1
Query: 1085 WSSRGPRPWARSCRTCC 1135
WS P+ W R C CC
Sbjct: 361 WSHLRPKEWWRCCYNCC 411
>gb|CO513406.1|CO513406 s13dSG38F0900075_129976 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 520
Score = 28.1 bits (55), Expect = 3.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1 / -1
Query: 862 LCVLPMFHVYSLHSILLCGMRAGAALVIMKRFDTL 966
+CV+ +F S +SI C +RA + I+ F+T+
Sbjct: 472 ICVIFLFISPSFYSIRWCPIRATTPIYILS*FETI 368
>gb|CO516409.1|CO516409 s13dSG27D0600048_446146 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 554
Score = 28.1 bits (55), Expect = 3.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3 / +2
Query: 1758 KEGSESKAGVWILQRVIVLMPLSSFYAKTTPILVN 1862
KEG + + G L++++ L+P S + +PIL++
Sbjct: 425 KEGKQMRQGP*SLKQLVTLIPGESTVRRKSPILIS 529
>gb|AJ410094.1|AJ410094 AJ410094 Medicago sativa library (Kalo P) Medicago sativa cDNA clone
U1208, mRNA sequence
Length = 527
Score = 27.6 bits (54), Expect = 5.3
Identities = 10/36 (27%), Positives = 16/36 (44%)
Frame = -2 / +2
Query: 1466 KISSPSSTYPMSPVCSHPSESMVFAVASGLLRYPFI 1359
K+ + P +C+H + V LL YPF+
Sbjct: 86 KVKAKHGDAPFGELCTHCEKEAVNVSLGNLLTYPFV 193
>gb|CO517011.1|CO517011 s13dSG31A0200005_468568 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 27.6 bits (54), Expect = 5.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1 / -1
Query: 1183 EAGPVLSMCMAFAKEPLPVKSGACGTVVRNAELKIIDPETGLSL 1314
+A V CM+ A PLP+ + + V +K P+T +S+
Sbjct: 498 DAPAVFKNCMSLAMNPLPLTAKVAVSKVGVPSMKFRPPDTMVSV 367
>gb|CO512261.1|CO512261 s13dSG03H0500044_114036 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 524
Score = 24.9 bits (48), Expect(2) = 5.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = +2 / -3
Query: 1109 WARSCRTCCAPSS 1147
W R CR+CC S
Sbjct: 219 WLRRCRSCCGMRS 181
Score = 22.6 bits (43), Expect(2) = 5.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1 / -2
Query: 853 DVVLCVLPMFHVYSLHSILLC 915
D +L VLP + ++H +LC
Sbjct: 406 DYILIVLPHVSLVTIHMQVLC 344
>gb|CO513856.1|CO513856 s13dSG73D0800062_156374 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 624
Score = 27.2 bits (53), Expect = 7.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1 / +3
Query: 69 LVELDLDRSYVQGWMYMAG 13
LV LDL +Y+ GW+ + G
Sbjct: 39 LVHLDLSNNYLDGWVEIEG 95
>gb|CO514696.1|CO514696 s13dSG55A0200017_328052 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 612
Score = 27.2 bits (53), Expect = 7.3
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2 / -3
Query: 107 TCRRQEACCFRPGWWSWTWIGAMCKDGC 24
TC ++ C G+ +W W M DGC
Sbjct: 538 TCVTKKVCFMGYGFEAWIWW*CMGFDGC 455
>emb|AJ575100.1|MSA575100 Medicago sativa mRNA for putative mitogen-activated protein kinase 1
(mekk1 gene)
Length = 1840
Score = 27.2 bits (53), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3 / -2
Query: 1915 VYTVFCIYIFFSLFSIKKFTKI 1850
+Y +F ++FFSLFS +KI
Sbjct: 783 IYLLFLFFLFFSLFSFAFRSKI 718
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,168,632
Number of Sequences: 7669
Number of extensions: 154919
Number of successful extensions: 1158
Number of sequences better than 10.0: 32
length of database: 1,248,568
effective HSP length: 45
effective length of database: 903,463
effective search space used: 556533208
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)