TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3802552.2.1
(252 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO514656.1|CO514656 s13dSG46D1100094_327972 Glandular tr... 125 2e-030
gb|L02902.1|ALFCHS2A Medicago sativa chalcone synthase (CHS... 125 2e-030
gb|L02903.1|ALFCHS4A Medicago sativa chalcone synthase (CHS... 125 2e-030
gb|L02904.1|ALFCHS8A Medicago sativa chalcone synthase (CHS... 125 2e-030
gb|L02905.1|ALFCHS9A Medicago sativa chalcone synthase (CHS... 125 2e-030
gb|U01018.1|U01018 Medicago sativa clone MsCHS4-1 chalcone ... 125 2e-030
gb|U01019.1|U01019 Medicago sativa clone MsCHS4-2 chalcone ... 125 2e-030
gb|U01021.1|U01021 Medicago sativa clone MsCHS12-1 chalcone... 125 2e-030
gb|U01020.1|U01020 Medicago sativa clone MsCHS6-4 chalcone ... 125 2e-030
emb|X68106.1|MSCHSI M.sativa msCHSI mRNA for chalcone synthase 125 2e-030
emb|X68107.1|MSCHSII M.sativa msCHSII mRNA for chalcone syn... 125 2e-030
gb|DQ122840.1| Medicago sativa clone K9 chalcone synthase m... 125 2e-030
gb|L02901.1|ALFCHS1A Medicago sativa chalcone synthase (CHS... 121 2e-029
gb|CO515726.1|CO515726 s13dSG77B0500045_419601 Glandular tr... 117 3e-028
>gb|CO514656.1|CO514656 s13dSG46D1100094_327972 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 534
Score = 125 bits (267), Expect = 2e-030
Identities = 53/80 (66%), Positives = 60/80 (75%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+ ARVLVVCSEIT VTFRGPS++HLDSLVGQALF
Sbjct: 103 YQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGA 282
Query: 193 XXXXXXXXXXXXXERPLFQL 252
ERP+F++
Sbjct: 283 AAMIIGADPDLTVERPIFEI 342
>gb|L02902.1|ALFCHS2A Medicago sativa chalcone synthase (CHS2) mRNA, complete cds
Length = 1254
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 536 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 715
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 716 AALIVGSDPVPEIEKPIFEM 775
>gb|L02903.1|ALFCHS4A Medicago sativa chalcone synthase (CHS4) mRNA, complete cds
Length = 1281
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +3
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 462 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 641
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 642 AALIVGSDPVPEIEKPIFEM 701
>gb|L02904.1|ALFCHS8A Medicago sativa chalcone synthase (CHS8) mRNA, complete cds
Length = 1347
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 520 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 699
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 700 AALIVGSDPVPEIEKPIFEM 759
>gb|L02905.1|ALFCHS9A Medicago sativa chalcone synthase (CHS9) mRNA, complete cds
Length = 1405
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 593 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 772
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 773 AALIVGSDPIPEIEKPIFEM 832
>gb|U01018.1|U01018 Medicago sativa clone MsCHS4-1 chalcone synthase mRNA, complete cds
Length = 1423
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 583 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 762
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 763 AALIVGSDPIPEIEKPIFEM 822
>gb|U01019.1|U01019 Medicago sativa clone MsCHS4-2 chalcone synthase mRNA, partial cds
Length = 1268
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 430 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 609
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 610 AALIVGSDPVPEIEKPIFEM 669
>gb|U01021.1|U01021 Medicago sativa clone MsCHS12-1 chalcone synthase mRNA, complete
cds
Length = 1380
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 544 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 723
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 724 AALIVGSDPVPEIEKPIFEM 783
>gb|U01020.1|U01020 Medicago sativa clone MsCHS6-4 chalcone synthase mRNA, partial cds
Length = 1009
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +1
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 175 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 354
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 355 AALIVGSDPIPEIEKPIFEM 414
>emb|X68106.1|MSCHSI M.sativa msCHSI mRNA for chalcone synthase
Length = 1361
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 548 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 727
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 728 AALIVGSDPVPEIEKPIFEM 787
>emb|X68107.1|MSCHSII M.sativa msCHSII mRNA for chalcone synthase
Length = 932
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 107 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 286
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 287 AALIVGSDPVPEIEKPIFEM 346
>gb|DQ122840.1| Medicago sativa clone K9 chalcone synthase mRNA, partial cds
Length = 660
Score = 125 bits (267), Expect = 2e-030
Identities = 52/80 (65%), Positives = 61/80 (76%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE+T VTFRGPS++HLDSLVGQALF
Sbjct: 2 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQALFGDGA 181
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 182 AALIVGSDPIPEIEKPIFEM 241
>gb|L02901.1|ALFCHS1A Medicago sativa chalcone synthase (CHS1) mRNA, complete cds
Length = 1386
Score = 121 bits (259), Expect = 2e-029
Identities = 52/80 (65%), Positives = 60/80 (75%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALFXXXX 192
YQQG FAGGTVLR+AKDLAENN+GARVLVVCSE T VTFRGPS++HLDSLVGQALF
Sbjct: 563 YQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEETPVTFRGPSDTHLDSLVGQALFGDGA 742
Query: 193 XXXXXXXXXXXXXERPLFQL 252
E+P+F++
Sbjct: 743 AALIVGSDPIPEIEKPIFEM 802
>gb|CO515726.1|CO515726 s13dSG77B0500045_419601 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 518
Score = 117 bits (251), Expect = 3e-028
Identities = 49/56 (87%), Positives = 53/56 (94%)
Frame = +1 / +2
Query: 13 YQQGWFAGGTVLRVAKDLAENNRGARVLVVCSEITXVTFRGPSESHLDSLVGQALF 180
YQQG FAGGTVLR+AKDLAENN+ ARVLVVCSEIT VTFRGPS++HLDSLVGQALF
Sbjct: 311 YQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSLVGQALF 478
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,089,293
Number of Sequences: 7669
Number of extensions: 9071
Number of successful extensions: 1362
Number of sequences better than 1.0e-020: 14
length of database: 1,248,568
effective HSP length: 38
effective length of database: 957,146
effective search space used: 43071570
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)