TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748389.2.1
(663 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516956.1|CO516956 s13dSG81A0400021_468458 Glandular tr... 122 4e-029
>gb|CO516956.1|CO516956 s13dSG81A0400021_468458 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 122 bits (261), Expect = 4e-029
Identities = 52/108 (48%), Positives = 64/108 (59%)
Frame = +3 / +1
Query: 3 SVVYAAFGSEAKLTSAQLQTIALGLEASGLPFLWAFRPPADAAPGQGTGGLPEGFEERVN 182
SVV +FGS + + AQ+ IA GLE S FLW R D G LPEGF ER
Sbjct: 40 SVVLLSFGSMGRFSKAQINEIARGLEKSEQRFLWVVRSELDLEELSLDGLLPEGFRERTK 219
Query: 183 GRGLVCRGWVPQPRLLAHESVGGFLTHAGWNSIAEGLSRGVTMVLLPL 326
+G+V R W PQ +L H+S+GGF+TH GWNS+ E + GV MV PL
Sbjct: 220 EKGMVVRNWAPQGAVLKHDSIGGFVTHCGWNSVLEAVCEGVPMVAWPL 363
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,232,857
Number of Sequences: 7669
Number of extensions: 68732
Number of successful extensions: 1089
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 164911660
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)