TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713091.2.1
(1013 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular tr... 166 4e-044
gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular tr... 160 4e-044
gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular tr... 159 6e-044
gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular tr... 167 2e-042
gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular tr... 162 9e-042
gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular tr... 162 5e-041
gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular tr... 161 1e-040
gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular tr... 161 1e-040
gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular tr... 160 4e-040
gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular tr... 116 3e-039
gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular tr... 115 5e-039
gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular tr... 115 7e-039
gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular tr... 150 1e-038
gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Ka... 143 3e-036
gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular tr... 117 9e-036
gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular tr... 116 2e-035
gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x va... 91 1e-031
gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x va... 90 3e-031
gb|CO514214.1|CO514214 s13dSG70G0900068_157090 Glandular tr... 99 2e-025
>gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 166 bits (356), Expect(2) = 4e-044
Identities = 66/107 (61%), Positives = 85/107 (79%)
Frame = +1 / +2
Query: 112 EGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGK 291
+ L +LG SPFVLRV AL +KG+ Y+YVEED NKS++LL+ NPV++KVPVL+H+GK
Sbjct: 44 DSLTLLGFWGSPFVLRVKWALELKGIQYQYVEEDFRNKSDMLLQYNPVYRKVPVLVHDGK 223
Query: 292 PICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPAW 432
I ESLVI++YVDE++ P+LP DPYERA ARFWA +ADDK PA+
Sbjct: 224 SISESLVILEYVDEIWKQNPLLPHDPYERAKARFWAKFADDKCVPAF 364
Score = 27.2 bits (53), Expect(2) = 4e-044
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1 / +2
Query: 538 GNAFFGGDSIGYVDIVL 588
G +FGG++IG+ DI +
Sbjct: 455 GRRYFGGENIGFADIAV 505
>gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 160 bits (343), Expect(2) = 4e-044
Identities = 66/120 (55%), Positives = 86/120 (71%)
Frame = +1 / +2
Query: 70 RGKIYLERETMAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSN 249
RG +++ + G + +K++G VSPFV RV AL +KGV YEYVEEDI NK+ LLL+ N
Sbjct: 44 RGNKLVQQYNIMGSQDVKLVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELN 223
Query: 250 PVHKKVPVLIHNGKPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPA 429
PVHKKVPVL+H KPI E +I++Y+DE + P+LP PYERA ARFWA +A+ KL A
Sbjct: 224 PVHKKVPVLVHAQKPIAELFIILEYIDETWKQSPLLPQHPYERALARFWADFAEQKLLNA 403
Score = 33.1 bits (66), Expect(2) = 4e-044
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 538 GNAFFGGDSIGYVDIVL 588
G FFGGD+IGY+D+ L
Sbjct: 497 GKKFFGGDNIGYLDLAL 547
>gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 159 bits (342), Expect(2) = 6e-044
Identities = 65/115 (56%), Positives = 85/115 (73%)
Frame = +1 / +2
Query: 85 LERETMAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKK 264
+++ + G + +K++G VSPFV RV AL +KGV YEYVEEDI NK+ LLL+ NPVHKK
Sbjct: 5 VQQYNIMGSQDVKLVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKK 184
Query: 265 VPVLIHNGKPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPA 429
VPVL+H KPI ES +I++Y+DE + P+LP PYERA ARFWA +A+ KL A
Sbjct: 185 VPVLVHAQKPIAESFIILEYIDETWKQSPLLPQHPYERALARFWADFAEQKLLNA 349
Score = 33.1 bits (66), Expect(2) = 6e-044
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1 / +2
Query: 538 GNAFFGGDSIGYVDIVL 588
G FFGGD+IGY+D+ L
Sbjct: 443 GKKFFGGDNIGYLDLAL 493
>gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 167 bits (360), Expect = 2e-042
Identities = 68/107 (63%), Positives = 85/107 (79%)
Frame = +1 / +1
Query: 112 EGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGK 291
+ L +LG SPFVLRV AL +KGV Y+YVEED NKS++LL+ NPV+KKVPVL+H+GK
Sbjct: 46 DSLTLLGFWGSPFVLRVKWALELKGVQYQYVEEDFRNKSDMLLQYNPVYKKVPVLVHDGK 225
Query: 292 PICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPAW 432
I ESLVI++YVDE++ P+LP DPYERA ARFWA +ADDK PA+
Sbjct: 226 SISESLVILEYVDEIWKQNPLLPHDPYERAKARFWAKFADDKCVPAF 366
>gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 162 bits (348), Expect(2) = 9e-042
Identities = 60/104 (57%), Positives = 82/104 (78%)
Frame = +1 / +2
Query: 118 LKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPI 297
+++LG+ SPFV RV +AL +KG+ Y Y+EE++ NKS+LLLK NP+HKKVPV +HNGKP+
Sbjct: 113 VQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPL 292
Query: 298 CESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPA 429
ESLVI++Y+DE + PI P PYE+A ARFW+ + DDK+ PA
Sbjct: 293 AESLVILEYIDETWENYPIFPQQPYEKALARFWSRFIDDKILPA 424
Score = 23.1 bits (44), Expect(2) = 9e-042
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1 / +2
Query: 547 FFGGDSIGYVDI 582
FFGG++I VDI
Sbjct: 527 FFGGENINIVDI 562
>gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 162 bits (349), Expect = 5e-041
Identities = 61/114 (53%), Positives = 88/114 (77%)
Frame = +1 / +2
Query: 79 IYLERETMAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVH 258
+ L+ +E +K+LG+ SPF RV +AL KG+ YE+V+ED++NKS+LLLK NPVH
Sbjct: 56 VELQ*SMATNQEDVKLLGIVGSPFFCRVQIALKFKGIEYEFVKEDLTNKSDLLLKYNPVH 235
Query: 259 KKVPVLIHNGKPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKL 420
KK+PV +HN KPI ESLVI++Y+DE++ PILP+DPY+++ ARFW+ + DDK+
Sbjct: 236 KKIPVFVHNEKPISESLVILEYIDEVWKQNPILPSDPYQKSLARFWSKFIDDKI 397
>gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 161 bits (347), Expect = 1e-040
Identities = 62/116 (53%), Positives = 85/116 (73%)
Frame = +1 / +1
Query: 82 YLERETMAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHK 261
YL E + +++LG+ SPFV RV +AL +KG+ Y Y+EE++ NKS+LLLK NP+HK
Sbjct: 76 YLNFEMAKDQGEVQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHK 255
Query: 262 KVPVLIHNGKPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPA 429
KVPV +HNGKP+ ESLVI++Y+DE + PI P PY +A ARFW+ + DDK+ PA
Sbjct: 256 KVPVFVHNGKPLAESLVILEYIDETWENYPIFPQQPYGKALARFWSRFIDDKILPA 423
>gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 161 bits (346), Expect = 1e-040
Identities = 61/114 (53%), Positives = 87/114 (76%)
Frame = +1 / +2
Query: 79 IYLERETMAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVH 258
+ L+ +E +K+LG+ SPF RV AL KG+ YE+V+ED++NKS+LLLK NPVH
Sbjct: 56 VELQ*SMATNQEDVKLLGIVGSPFFCRVQTALKFKGIEYEFVKEDLTNKSDLLLKYNPVH 235
Query: 259 KKVPVLIHNGKPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKL 420
KK+PV +HN KPI ESLVI++Y+DE++ PILP+DPY+++ ARFW+ + DDK+
Sbjct: 236 KKIPVFVHNEKPISESLVILEYIDEVWKQNPILPSDPYQKSLARFWSKFIDDKI 397
>gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 160 bits (343), Expect = 4e-040
Identities = 63/112 (56%), Positives = 86/112 (76%)
Frame = +1 / +3
Query: 109 KEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNG 288
+E +K+LG SPFV RV +AL +KG+ YE+ EE+++ KSE LLK NPVHKKVPV +HN
Sbjct: 69 QEHVKLLGATGSPFVCRVQIALKLKGIEYEFAEENLATKSEQLLKYNPVHKKVPVFVHNE 248
Query: 289 KPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDKLFPAWYGMV 444
KPI ESLVI++Y+DE++ PILP+DP++RA ARFW+ + DDK+ A + V
Sbjct: 249 KPISESLVILEYIDEVWKQNPILPSDPHQRALARFWSKFIDDKIVSASFKSV 404
>gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 116 bits (247), Expect(3) = 3e-039
Identities = 46/72 (63%), Positives = 59/72 (81%)
Frame = +1 / +2
Query: 124 VLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPICE 303
+L VSPF +RV +AL KG+ +EY EED+ NKS LLL+ NPVHKK+PVLIHNGKPICE
Sbjct: 86 LLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICE 265
Query: 304 SLVIMQYVDELF 339
SL+ +QY+DE++
Sbjct: 266 SLIAVQYIDEVW 301
Score = 47.8 bits (98), Expect(3) = 3e-039
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +2
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 314 PLLPSDPYQRSQARFWADYVDKKIY 388
Score = 31.3 bits (62), Expect(3) = 3e-039
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1 / +2
Query: 535 GGNAFFGGDSIGYVDIVL 588
G +FGGD IG+VD+ L
Sbjct: 485 GDKTYFGGDKIGFVDVAL 538
>gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 115 bits (245), Expect(3) = 5e-039
Identities = 46/72 (63%), Positives = 58/72 (80%)
Frame = +1 / +3
Query: 124 VLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPICE 303
+L VSPF +RV +AL KG+ +EY EED+ NKS LLL+ NPVHKK+PVLIHNGKPICE
Sbjct: 102 LLDYWVSPFGIRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICE 281
Query: 304 SLVIMQYVDELF 339
SL+ QY+DE++
Sbjct: 282 SLIAAQYIDEVW 317
Score = 47.8 bits (98), Expect(3) = 5e-039
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +3
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 330 PLLPSDPYQRSQARFWADYVDKKIY 404
Score = 31.3 bits (62), Expect(3) = 5e-039
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1 / +3
Query: 535 GGNAFFGGDSIGYVDIVL 588
G +FGGD IG+VD+ L
Sbjct: 501 GDKTYFGGDKIGFVDVAL 554
>gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 115 bits (246), Expect(3) = 7e-039
Identities = 45/66 (68%), Positives = 57/66 (86%)
Frame = +1 / +1
Query: 142 SPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPICESLVIMQ 321
SPF +R+ +AL KG+ +EY EED+SNKS LLL+ NPVHKK+PVLIHNGKPICESLV +Q
Sbjct: 112 SPFGMRLRIALAEKGIKHEYKEEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLVAVQ 291
Query: 322 YVDELF 339
Y+DE++
Sbjct: 292 YIDEVW 309
Score = 47.8 bits (98), Expect(3) = 7e-039
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +1
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 322 PLLPSDPYQRSRARFWADYVDKKIY 396
Score = 30.4 bits (60), Expect(3) = 7e-039
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1 / +1
Query: 535 GGNAFFGGDSIGYVDIVL 588
G +FGGD +G+VD+ L
Sbjct: 493 GDKTYFGGDKLGFVDVAL 546
>gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 150 bits (323), Expect(2) = 1e-038
Identities = 60/105 (57%), Positives = 80/105 (76%)
Frame = +1 / +3
Query: 103 AGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIH 282
+ +E +K+ GL SPF RV +AL +KGV Y+Y EE N S+ ++K NPV+KKVPVL+H
Sbjct: 51 SNQEEVKLFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVH 230
Query: 283 NGKPICESLVIMQYVDELFAGRPILPTDPYERATARFWAAYADDK 417
NGKPI ESLVI++Y+DE + PILP+DPY+RA ARFW+ + DDK
Sbjct: 231 NGKPISESLVILEYIDETWKQNPILPSDPYKRALARFWSKFIDDK 365
Score = 26.7 bits (52), Expect(2) = 1e-038
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +3
Query: 547 FFGGDSIGYVDI 582
FFGGD IG +DI
Sbjct: 480 FFGGDEIGLIDI 515
>gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U62, mRNA sequence
Length = 822
Score = 143 bits (306), Expect(2) = 3e-036
Identities = 56/92 (60%), Positives = 72/92 (78%)
Frame = +1 / +1
Query: 142 SPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPICESLVIMQ 321
SPF RV +AL +KGV Y+Y EE N S+ ++K NPV+KKVPVL+HNGKPI ESLVI++
Sbjct: 10 SPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPISESLVILE 189
Query: 322 YVDELFAGRPILPTDPYERATARFWAAYADDK 417
Y+DE + PILP+DPY+RA ARFW+ + DDK
Sbjct: 190 YIDETWKQNPILPSDPYKRALARFWSKFIDDK 285
Score = 26.7 bits (52), Expect(2) = 3e-036
Identities = 9/12 (75%), Positives = 10/12 (83%)
Frame = +1 / +1
Query: 547 FFGGDSIGYVDI 582
FFGGD IG +DI
Sbjct: 400 FFGGDEIGLIDI 435
>gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 117 bits (250), Expect(2) = 9e-036
Identities = 47/80 (58%), Positives = 64/80 (80%)
Frame = +1 / +2
Query: 100 MAGKEGLKVLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLI 279
+A +G+ +L VSPF +RV +AL KG+ +EY EED+ NKS LLL+ +PVHKK+PVLI
Sbjct: 80 LAMADGVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMDPVHKKIPVLI 259
Query: 280 HNGKPICESLVIMQYVDELF 339
HNGKPICESL+ +QY+DE++
Sbjct: 260 HNGKPICESLIAVQYIDEVW 319
Score = 47.8 bits (98), Expect(2) = 9e-036
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +2
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 332 PLLPSDPYQRSQARFWADYVDKKIY 406
>gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 415
Score = 116 bits (247), Expect(2) = 2e-035
Identities = 46/72 (63%), Positives = 59/72 (81%)
Frame = +1 / +2
Query: 124 VLGLQVSPFVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPICE 303
+L VSPF +RV +AL KG+ +EY EED+ NKS LLL+ NPVHKK+PVLIHNGKPICE
Sbjct: 89 LLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICE 268
Query: 304 SLVIMQYVDELF 339
SL+ +QY+DE++
Sbjct: 269 SLIAVQYIDEVW 304
Score = 47.8 bits (98), Expect(2) = 2e-035
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +2
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 317 PLLPSDPYQRSQARFWADYVDKKIY 391
>gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 777
Score = 90.9 bits (192), Expect(3) = 1e-031
Identities = 34/45 (75%), Positives = 41/45 (91%)
Frame = +1 / +1
Query: 205 EEDISNKSELLLKSNPVHKKVPVLIHNGKPICESLVIMQYVDELF 339
EED+SNKS LLL NPVHKK+PVLIHNGKPICESL+ +QY+DE++
Sbjct: 7 EEDLSNKSPLLLXMNPVHKKIPVLIHNGKPICESLIAVQYIDEVW 141
Score = 47.8 bits (98), Expect(3) = 1e-031
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +1
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 154 PLLPSDPYQRSQARFWADYVDKKIY 228
Score = 30.4 bits (60), Expect(3) = 1e-031
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1 / +1
Query: 535 GGNAFFGGDSIGYVDIVL 588
G +FGGD +G+VD+ L
Sbjct: 325 GDRTYFGGDXLGFVDVTL 378
>gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 739
Score = 90.0 bits (190), Expect(3) = 3e-031
Identities = 33/45 (73%), Positives = 42/45 (93%)
Frame = +1 / +1
Query: 205 EEDISNKSELLLKSNPVHKKVPVLIHNGKPICESLVIMQYVDELF 339
+ED+SNKS LLL+ NPVHKK+PVLIHNGKPICESL+ +QY+DE++
Sbjct: 7 KEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVW 141
Score = 47.8 bits (98), Expect(3) = 3e-031
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +1 / +1
Query: 349 PILPTDPYERATARFWAAYADDKLF 423
P+LP+DPY+R+ ARFWA Y D K++
Sbjct: 154 PLLPSDPYQRSQARFWADYVDKKIY 228
Score = 29.9 bits (59), Expect(3) = 3e-031
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1 / +1
Query: 535 GGNAFFGGDSIGYVDIVL 588
G +FGGD +G+VD+ L
Sbjct: 325 GDRTYFGGDKLGFVDVXL 378
>gb|CO514214.1|CO514214 s13dSG70G0900068_157090 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 344
Score = 99.1 bits (210), Expect(2) = 2e-025
Identities = 40/64 (62%), Positives = 50/64 (78%)
Frame = +1 / +3
Query: 148 FVLRVCLALNMKGVSYEYVEEDISNKSELLLKSNPVHKKVPVLIHNGKPICESLVIMQYV 327
F +RV +AL K YEY EED+ NKS LLL+ NP+HKK+PVLIHNGKPI ES +I QY+
Sbjct: 93 FGMRVRIALXEKSGKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPIWESAIIGQYI 272
Query: 328 DELF 339
DE++
Sbjct: 273 DEVW 284
Score = 31.3 bits (62), Expect(2) = 2e-025
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1 / +3
Query: 355 LPTDPYERATARFW 396
+P+ PYERA ARFW
Sbjct: 303 MPSHPYERAQARFW 344
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,068,925
Number of Sequences: 7669
Number of extensions: 82852
Number of successful extensions: 769
Number of sequences better than 1.0e-020: 24
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 270127494
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)