TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713013.2.1
(3807 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular tr... 270 2e-077
gb|DQ122795.1| Medicago sativa clone M22 putative cellulose... 100 7e-043
>gb|CO516105.1|CO516105 s13dSG65C1200098_445538 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 529
Score = 270 bits (583), Expect(2) = 2e-077
Identities = 102/141 (72%), Positives = 118/141 (83%)
Frame = -2 / +1
Query: 1031 ALGSVEILFSRHCPLWYGYGGRLKFLERFAYINTTIYPLTSIPLLIYCILPAICLLTGKF 852
ALGSVEI FS+HCP+WYGYGG LK LERF+YIN+ +YP TS+PL++YC LPAICLLTGKF
Sbjct: 7 ALGSVEIFFSKHCPIWYGYGGGLKLLERFSYINSVVYPWTSLPLIVYCTLPAICLLTGKF 186
Query: 851 IIPEISNXXXXXXXXXXXXXFATGILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQG 672
I+PEISN ATGILEM+W GVGID+WWRNEQFWVIGG S+H FA+FQG
Sbjct: 187 IVPEISNYASLVFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGASSHFFALFQG 366
Query: 671 LLKVLAGIDTNFTVTSKASDE 609
LLKVLAG+DTNFTVTSKA+D+
Sbjct: 367 LLKVLAGVDTNFTVTSKAADD 429
Score = 198 bits (427), Expect(2) = 7e-057
Identities = 86/138 (62%), Positives = 100/138 (72%)
Frame = +1 / -3
Query: 619 ALEVTVKLVSMPASTLSRPWNTAKRCAEMPPITQNCSFLHHSSMPTPLHLISRMPVAKIE 798
A +VTVK VS PA TLS+PW AK+C E PPITQNCSFLH SS+PTP H ISR+PVA ++
Sbjct: 419 AFDVTVKFVSTPAKTLSKPWKRAKKCDEAPPITQNCSFLHQSSIPTPPHCISRIPVAAMD 240
Query: 799 MKREMNQMLAKLLISGMMNFPVSRQMAGRMQ*MRSGMDVSG*MVVLMYANLSRNLSRPP* 978
MKR MN LA LLISG +NFPV R MAGR+Q* +G +V G M S N + PP*
Sbjct: 239 MKRAMNTRLA*LLISGTINFPVRRHMAGRVQ*TINGREVQGYTTEFM*EKRSNNFNPPP* 60
Query: 979 PYHRGQCRLKRISTDPRA 1032
PY GQC LK+IST+PRA
Sbjct: 59 PYQIGQCLLKKISTEPRA 6
Score = 39.6 bits (80), Expect(2) = 7e-057
Identities = 16/25 (64%), Positives = 17/25 (68%)
Frame = +1 / -3
Query: 511 PATTPTRLMIRMVVGGIRSVVHLNM 585
P TPT MI V+GGI S VHLNM
Sbjct: 524 PTITPTIFMINSVIGGINSEVHLNM 450
Score = 36.8 bits (74), Expect(2) = 2e-077
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2 / +1
Query: 611 EDGDFAELYMFKWXXXXXXXXXXXXXXLVGVVAGI 507
+DG+F+ELY+FKW +VGV+ G+
Sbjct: 424 DDGEFSELYIFKWTSLLIPPMTLLIMNIVGVIVGV 528
>gb|DQ122795.1| Medicago sativa clone M22 putative cellulose synthase catalytic
subunit mRNA, partial cds
Length = 512
Score = 99.6 bits (211), Expect(3) = 7e-043
Identities = 35/55 (63%), Positives = 48/55 (87%)
Frame = -2 / +2
Query: 779 ILEMRWSGVGIDEWWRNEQFWVIGGISAHLFAVFQGLLKVLAGIDTNFTVTSKAS 615
+LE++WSG+ + +WWRNEQFW+IGG SAH AV QGLLKV+AG+D +FT+TSK++
Sbjct: 116 LLEIKWSGITLHDWWRNEQFWLIGGTSAHPAAVLQGLLKVIAGVDISFTLTSKSA 280
Score = 78.5 bits (165), Expect(3) = 7e-043
Identities = 28/74 (37%), Positives = 41/74 (55%)
Frame = -2 / +2
Query: 614 DEDGDFAELYMFKWXXXXXXXXXXXXXXLVGVVAGISYAINSGYQSWGPLFGKLFFAFWV 435
D + +FA+LY+ KW + + G++ + S + W L G LFF+FWV
Sbjct: 290 DGEDEFADLYLVKWSFLMVPPITIMMVNTIAIAVGVARTLYSPFPQWSRLVGGLFFSFWV 469
Query: 434 IVHLYPFLKGLMGR 393
+ HLYPF KGL+GR
Sbjct: 470 LCHLYPFAKGLLGR 511
Score = 31.3 bits (62), Expect(3) = 7e-043
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2 / +2
Query: 893 YCILPAICLLTGKFIIPEIS 834
YC LPA+ L +G+FI+ +S
Sbjct: 2 YCFLPALSLFSGQFIVQSLS 61
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 31,389,737
Number of Sequences: 7669
Number of extensions: 464732
Number of successful extensions: 2494
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 46
effective length of database: 895,794
effective search space used: 1094660268
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)