TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3561840.2.1
(1168 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular tr... 99 2e-029
gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular tr... 100 1e-026
gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA,... 109 6e-025
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 99 1e-021
gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box pr... 98 2e-021
>gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 501
Score = 98.7 bits (209), Expect(2) = 2e-029
Identities = 38/61 (62%), Positives = 51/61 (83%)
Frame = +2 / +1
Query: 104 MGRGRIEIKRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANN 283
MGR ++++KRIE+ +RQVTF KRR GLLKKA E+SVLCDAEVAL++FS G+L+ Y+ +
Sbjct: 91 MGRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFNYSTD 270
Query: 284 S 286
S
Sbjct: 271 S 273
Score = 45.5 bits (93), Expect(2) = 2e-029
Identities = 16/51 (31%), Positives = 34/51 (66%)
Frame = +2 / +1
Query: 362 NAQQFYQQESAKLRNQIQMLQNTNRHLVGDSVGNLSLKELKQLESRLEKGI 514
+ Q+ + E +L+ +I++L+ RH +G+ + ++S KEL+ LE +L+ G+
Sbjct: 349 DTQENWTMEYTRLKAKIELLERNQRHYLGEDLDSMSHKELQSLEQQLDTGL 501
>gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 99.6 bits (211), Expect(2) = 1e-026
Identities = 38/61 (62%), Positives = 52/61 (85%)
Frame = +2 / +2
Query: 104 MGRGRIEIKRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANN 283
MGR ++++KRIE+ +RQVTF KRR GLLKKA E+SVLCDAEVAL++FS G+L++Y+ +
Sbjct: 32 MGRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFDYSTD 211
Query: 284 S 286
S
Sbjct: 212 S 214
Score = 35.4 bits (71), Expect(2) = 1e-026
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +2 / +2
Query: 362 NAQQFYQQESAKLRNQIQMLQNTNRHLVGDSVGNLSLKELK 484
+ Q+ + E +L+ +I++L+ RH +G+ + ++S KEL+
Sbjct: 290 DTQENWTMEYTRLKAKIELLERNQRHYLGEDLNSMSHKELQ 412
>gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA, partial cds
Length = 775
Score = 109 bits (233), Expect = 6e-025
Identities = 43/70 (61%), Positives = 59/70 (84%)
Frame = +2 / +1
Query: 110 RGRIEIKRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSV 289
RG+I+IKRIEN T+RQV F KRRNGLLKKA EL++LCDAEV +++FSS +LY++A+ S+
Sbjct: 1 RGKIQIKRIENTTNRQVIFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSL 180
Query: 290 KATIERYKKA 319
++ I RY K+
Sbjct: 181 RSVIGRYNKS 210
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 98.7 bits (209), Expect = 1e-021
Identities = 39/62 (62%), Positives = 54/62 (87%)
Frame = +2 / +2
Query: 101 SMGRGRIEIKRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYAN 280
+M RG+I+IKRIEN T+RQVT+ KRR+GL KKA EL+VLCDA+V++++FSS G+L+EY +
Sbjct: 1151 AMARGKIQIKRIENTTNRQVTYSKRRDGLFKKANELTVLCDAKVSIIMFSSTGKLHEYIS 1330
Query: 281 NS 286
S
Sbjct: 1331 PS 1336
>gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box protein mRNA, complete cds
Length = 965
Score = 97.7 bits (207), Expect = 2e-021
Identities = 39/61 (63%), Positives = 52/61 (85%)
Frame = +2 / +1
Query: 104 MGRGRIEIKRIENNTSRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANN 283
M RG+I+IKRIEN T+RQV + KRRNGL KKA EL+VLCDA+V++++FSS G+L+EY +
Sbjct: 1 MARGKIQIKRIENTTNRQVIYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISP 180
Query: 284 S 286
S
Sbjct: 181 S 183
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,498,668
Number of Sequences: 7669
Number of extensions: 135320
Number of successful extensions: 1090
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 316986345
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)