TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3203888.2.1
         (787 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|AJ248322.1|MSA248322  Medicago sativa subsp. X varia mRN...   233   8e-067
gb|M63853.1|ALFSALMCAT  Medicago sativa S-adenosyl-L-methion...   128   6e-037
emb|AX259373.1|  Sequence 3 from Patent WO0173090                 128   6e-037
gb|L10211.1|ALFIOM  Medicago sativa isoliquiritigenin 2'-O-m...   108   6e-032
gb|AJ888485.1|AJ888485  AJ888485 Medicago sativa subsp. x va...   106   3e-025
gb|CO512262.1|CO512262  s13dSG03H0600048_114038 Glandular tr...    94   1e-023
>emb|AJ248322.1|MSA248322 Medicago sativa subsp. X varia mRNA for O-diphenol-O-methyl
            transferase (omt gene)
          Length = 1346

 Score =  233 bits (504), Expect(2) = 8e-067
 Identities = 88/146 (60%), Positives = 113/146 (77%)
 Frame = -1 / +3

                                                                        
Query: 724  GFRGVATLVDVGGSSGACLEMIMRRVPTITEGINFDLPDVVAAAPSIAGVRHVGGDMFKS 545
            GF+GV TLVDVGG+SG  L MIM + P I +GINFDLPD++++AP + G+ HVGGD  +S
Sbjct: 615  GFKGVETLVDVGGNSGVILNMIMNKYPNILKGINFDLPDMISSAPQLPGITHVGGDALES 794

                                                                        
Query: 544  IPSGDAIFMKWVLTTWTDDECPAILRNCPAALPDGGKLVACEPVVPEETDSSPGTRALLE 365
            +P+GDAIF KW + TWTD+EC  +L+NC  ALP  GKL+ CEPV PE TD S  TRALL 
Sbjct: 795  VPAGDAIFTKWTMLTWTDEECKKVLQNCYKALPVNGKLIVCEPVSPELTDESQRTRALLS 974

                                      
Query: 364  NDIFVMTPYRTQGRERSEEEFRHLGV 287
             DIF+MT YRT+G+ R+EE+F+ LG+
Sbjct: 975  GDIFIMTMYRTKGKHRTEEQFKQLGI 1052

 Score =  120 bits (257), Expect = 2e-028
 Identities = 64/142 (45%), Positives = 77/142 (54%)
 Frame = +3 / -2

                                                                        
Query: 291  PRWRNSSSERSLPCVR*GVMTKMSFSSSALVPXXXXXXXXXXXXQATSLPPSGKAAGQFL 470
            P   N SS    P V   V+  MS  ++ALV             Q  + P +G+A  QF 
Sbjct: 1048 PSCLNCSSVLCFPLVLYIVIMNMSPDNNALVL*LSSVSSGDTGSQTINFPFTGRAL*QFC 869

                                                                        
Query: 471  RMAGHSSSVHVVRTHFMKMASPEGMDLNISPPTCLTPAIDGAAATTSGRSKLMPSVMVGT 650
            +   HSSSVHV   H +K+ASP G D + SPPTC+ P   GA    SGRSKLMP  M G 
Sbjct: 868  KTFLHSSSVHVNIVHLVKIASPAGTDSSASPPTCVIPGN*GAEDIISGRSKLMPLSMFGY 689

                                  
Query: 651  LRMIISRQAPELPPTSTSVATP 716
            L +II R  PE PPTST V+TP
Sbjct: 688  LFIIILRITPEFPPTSTRVSTP 623

 Score = 35.0 bits (70), Expect(2) = 8e-067
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1 / +3

                                     
Query: 283  AAGFTAFRAIYLDPFYAVLEYTK*S 209
            + GF  FRA ++DP++ VLE+ K*+
Sbjct: 1053 STGFLRFRAFHIDPYFPVLEFQK*A 1127
>gb|M63853.1|ALFSALMCAT Medicago sativa S-adenosyl-L-methionine: caffeic acid
           3-0-methyltransferase mRNA, complete cds
          Length = 1317

 Score =  128 bits (275), Expect(2) = 6e-037
 Identities = 48/96 (50%), Positives = 65/96 (67%)
 Frame = -1 / +1

                                                                       
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
           +GINFDLP V+  APS  GV HVGGDMF SIP  DA+FMKW+   W+D+ C   L+NC  
Sbjct: 706 KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYE 885

                                               
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
           ALPD GK++  E ++P   DSS  T+ ++  D+ ++
Sbjct: 886 ALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIML 993

 Score = 40.0 bits (81), Expect(2) = 6e-037
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1 / +1

                                        
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
           GF G+ +LVDVGG +GA +  I+ + PTI
Sbjct: 619 GFEGLKSLVDVGGGTGAVINTIVSKYPTI 705
>emb|AX259373.1| Sequence 3 from Patent WO0173090
          Length = 1098

 Score =  128 bits (275), Expect(2) = 6e-037
 Identities = 48/96 (50%), Positives = 65/96 (67%)
 Frame = -1 / +1

                                                                       
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
           +GINFDLP V+  APS  GV HVGGDMF SIP  DA+FMKW+   W+D+ C   L+NC  
Sbjct: 676 KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYE 855

                                               
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
           ALPD GK++  E ++P   DSS  T+ ++  D+ ++
Sbjct: 856 ALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIML 963

 Score = 40.0 bits (81), Expect(2) = 6e-037
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = -1 / +1

                                        
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
           GF G+ +LVDVGG +GA +  I+ + PTI
Sbjct: 589 GFEGLKSLVDVGGGTGAVINTIVSKYPTI 675
>gb|L10211.1|ALFIOM Medicago sativa isoliquiritigenin 2'-O-methyltransferase mRNA,
           complete cds
          Length = 1300

 Score =  108 bits (230), Expect(2) = 6e-032
 Identities = 40/84 (47%), Positives = 58/84 (69%)
 Frame = -1 / +3

                                                                       
Query: 640 ITEGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNC 461
           + +GINFDLP V+  AP ++G+ HVGGDMF S+P GDA+ +K V   W+D++C   L NC
Sbjct: 726 LIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNC 905

                                   
Query: 460 PAALPDGGKLVACEPVVPEETDSS 389
             AL   GK++  E ++PEE ++S
Sbjct: 906 HKALSPNGKVIIVEFILPEEPNTS 977

 Score = 43.7 bits (89), Expect(2) = 6e-032
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = -1 / +3

                                        
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
           GF G++TLVDVGG SG  LE+I+ + P I
Sbjct: 645 GFEGISTLVDVGGGSGRNLELIISKYPLI 731
>gb|AJ888485.1|AJ888485 AJ888485 Medicago sativa subsp. x varia 4-day-old Medicago sativa
           subsp. x varia cDNA, mRNA sequence
          Length = 546

 Score =  106 bits (227), Expect(2) = 3e-025
 Identities = 36/84 (42%), Positives = 59/84 (70%)
 Frame = -1 / +2

                                                                       
Query: 595 APSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAALPDGGKLVACEP 416
           AP   GV HVGGDMF+S+P+GDAIFMKW+L  W+D+ C  +L+NC  A+P+ GK++  + 
Sbjct: 11  APVYPGVEHVGGDMFESVPAGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDT 190

                                   
Query: 415 VVPEETDSSPGTRALLENDIFVMT 344
           ++P   +++   ++   +D+ +MT
Sbjct: 191 ILPVMPETTANAKSACMSDVLMMT 262

 Score = 22.6 bits (43), Expect(2) = 3e-025
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -1 / +2

                       
Query: 328 GRERSEEEFRHL 293
           G+ER+E+EF+ L
Sbjct: 275 GKERTEQEFKEL 310
>gb|CO512262.1|CO512262 s13dSG03H0600048_114038 Glandular trichomes Medicago sativa cDNA,
           mRNA sequence
          Length = 588

 Score = 93.6 bits (198), Expect(2) = 1e-023
 Identities = 33/58 (56%), Positives = 43/58 (74%)
 Frame = -1 / +1

                                                                     
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNC 461
           +G+NFDLP V+  AP+  GV HVGGDMF+ IP GDAIF+K +L  W D+ C  +L+NC
Sbjct: 412 QGVNFDLPQVIEHAPTYPGVTHVGGDMFEGIPKGDAIFLKTILHNWDDEHCLKLLKNC 585

 Score = 30.4 bits (60), Expect(2) = 1e-023
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1 / +1

                                        
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
           GF  +  LVDVGG +G  L +I  + P I
Sbjct: 325 GFDHIKKLVDVGGGNGINLNLITSKYPYI 411
  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 5,334,793
Number of Sequences: 7669
Number of extensions: 58897
Number of successful extensions: 1129
Number of sequences better than 1.0e-020: 7
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 202896930
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)