TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3203888.2.1
(787 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ248322.1|MSA248322 Medicago sativa subsp. X varia mRN... 233 8e-067
gb|M63853.1|ALFSALMCAT Medicago sativa S-adenosyl-L-methion... 128 6e-037
emb|AX259373.1| Sequence 3 from Patent WO0173090 128 6e-037
gb|L10211.1|ALFIOM Medicago sativa isoliquiritigenin 2'-O-m... 108 6e-032
gb|AJ888485.1|AJ888485 AJ888485 Medicago sativa subsp. x va... 106 3e-025
gb|CO512262.1|CO512262 s13dSG03H0600048_114038 Glandular tr... 94 1e-023
>emb|AJ248322.1|MSA248322 Medicago sativa subsp. X varia mRNA for O-diphenol-O-methyl
transferase (omt gene)
Length = 1346
Score = 233 bits (504), Expect(2) = 8e-067
Identities = 88/146 (60%), Positives = 113/146 (77%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTITEGINFDLPDVVAAAPSIAGVRHVGGDMFKS 545
GF+GV TLVDVGG+SG L MIM + P I +GINFDLPD++++AP + G+ HVGGD +S
Sbjct: 615 GFKGVETLVDVGGNSGVILNMIMNKYPNILKGINFDLPDMISSAPQLPGITHVGGDALES 794
Query: 544 IPSGDAIFMKWVLTTWTDDECPAILRNCPAALPDGGKLVACEPVVPEETDSSPGTRALLE 365
+P+GDAIF KW + TWTD+EC +L+NC ALP GKL+ CEPV PE TD S TRALL
Sbjct: 795 VPAGDAIFTKWTMLTWTDEECKKVLQNCYKALPVNGKLIVCEPVSPELTDESQRTRALLS 974
Query: 364 NDIFVMTPYRTQGRERSEEEFRHLGV 287
DIF+MT YRT+G+ R+EE+F+ LG+
Sbjct: 975 GDIFIMTMYRTKGKHRTEEQFKQLGI 1052
Score = 120 bits (257), Expect = 2e-028
Identities = 64/142 (45%), Positives = 77/142 (54%)
Frame = +3 / -2
Query: 291 PRWRNSSSERSLPCVR*GVMTKMSFSSSALVPXXXXXXXXXXXXQATSLPPSGKAAGQFL 470
P N SS P V V+ MS ++ALV Q + P +G+A QF
Sbjct: 1048 PSCLNCSSVLCFPLVLYIVIMNMSPDNNALVL*LSSVSSGDTGSQTINFPFTGRAL*QFC 869
Query: 471 RMAGHSSSVHVVRTHFMKMASPEGMDLNISPPTCLTPAIDGAAATTSGRSKLMPSVMVGT 650
+ HSSSVHV H +K+ASP G D + SPPTC+ P GA SGRSKLMP M G
Sbjct: 868 KTFLHSSSVHVNIVHLVKIASPAGTDSSASPPTCVIPGN*GAEDIISGRSKLMPLSMFGY 689
Query: 651 LRMIISRQAPELPPTSTSVATP 716
L +II R PE PPTST V+TP
Sbjct: 688 LFIIILRITPEFPPTSTRVSTP 623
Score = 35.0 bits (70), Expect(2) = 8e-067
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = -1 / +3
Query: 283 AAGFTAFRAIYLDPFYAVLEYTK*S 209
+ GF FRA ++DP++ VLE+ K*+
Sbjct: 1053 STGFLRFRAFHIDPYFPVLEFQK*A 1127
>gb|M63853.1|ALFSALMCAT Medicago sativa S-adenosyl-L-methionine: caffeic acid
3-0-methyltransferase mRNA, complete cds
Length = 1317
Score = 128 bits (275), Expect(2) = 6e-037
Identities = 48/96 (50%), Positives = 65/96 (67%)
Frame = -1 / +1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+ APS GV HVGGDMF SIP DA+FMKW+ W+D+ C L+NC
Sbjct: 706 KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYE 885
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALPD GK++ E ++P DSS T+ ++ D+ ++
Sbjct: 886 ALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIML 993
Score = 40.0 bits (81), Expect(2) = 6e-037
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ +LVDVGG +GA + I+ + PTI
Sbjct: 619 GFEGLKSLVDVGGGTGAVINTIVSKYPTI 705
>emb|AX259373.1| Sequence 3 from Patent WO0173090
Length = 1098
Score = 128 bits (275), Expect(2) = 6e-037
Identities = 48/96 (50%), Positives = 65/96 (67%)
Frame = -1 / +1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPA 455
+GINFDLP V+ APS GV HVGGDMF SIP DA+FMKW+ W+D+ C L+NC
Sbjct: 676 KGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYE 855
Query: 454 ALPDGGKLVACEPVVPEETDSSPGTRALLENDIFVM 347
ALPD GK++ E ++P DSS T+ ++ D+ ++
Sbjct: 856 ALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIML 963
Score = 40.0 bits (81), Expect(2) = 6e-037
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G+ +LVDVGG +GA + I+ + PTI
Sbjct: 589 GFEGLKSLVDVGGGTGAVINTIVSKYPTI 675
>gb|L10211.1|ALFIOM Medicago sativa isoliquiritigenin 2'-O-methyltransferase mRNA,
complete cds
Length = 1300
Score = 108 bits (230), Expect(2) = 6e-032
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = -1 / +3
Query: 640 ITEGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNC 461
+ +GINFDLP V+ AP ++G+ HVGGDMF S+P GDA+ +K V W+D++C L NC
Sbjct: 726 LIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNC 905
Query: 460 PAALPDGGKLVACEPVVPEETDSS 389
AL GK++ E ++PEE ++S
Sbjct: 906 HKALSPNGKVIIVEFILPEEPNTS 977
Score = 43.7 bits (89), Expect(2) = 6e-032
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = -1 / +3
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF G++TLVDVGG SG LE+I+ + P I
Sbjct: 645 GFEGISTLVDVGGGSGRNLELIISKYPLI 731
>gb|AJ888485.1|AJ888485 AJ888485 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 546
Score = 106 bits (227), Expect(2) = 3e-025
Identities = 36/84 (42%), Positives = 59/84 (70%)
Frame = -1 / +2
Query: 595 APSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNCPAALPDGGKLVACEP 416
AP GV HVGGDMF+S+P+GDAIFMKW+L W+D+ C +L+NC A+P+ GK++ +
Sbjct: 11 APVYPGVEHVGGDMFESVPAGDAIFMKWILHDWSDEHCLKLLKNCYKAIPEDGKVIVVDT 190
Query: 415 VVPEETDSSPGTRALLENDIFVMT 344
++P +++ ++ +D+ +MT
Sbjct: 191 ILPVMPETTANAKSACMSDVLMMT 262
Score = 22.6 bits (43), Expect(2) = 3e-025
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -1 / +2
Query: 328 GRERSEEEFRHL 293
G+ER+E+EF+ L
Sbjct: 275 GKERTEQEFKEL 310
>gb|CO512262.1|CO512262 s13dSG03H0600048_114038 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 93.6 bits (198), Expect(2) = 1e-023
Identities = 33/58 (56%), Positives = 43/58 (74%)
Frame = -1 / +1
Query: 634 EGINFDLPDVVAAAPSIAGVRHVGGDMFKSIPSGDAIFMKWVLTTWTDDECPAILRNC 461
+G+NFDLP V+ AP+ GV HVGGDMF+ IP GDAIF+K +L W D+ C +L+NC
Sbjct: 412 QGVNFDLPQVIEHAPTYPGVTHVGGDMFEGIPKGDAIFLKTILHNWDDEHCLKLLKNC 585
Score = 30.4 bits (60), Expect(2) = 1e-023
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1 / +1
Query: 724 GFRGVATLVDVGGSSGACLEMIMRRVPTI 638
GF + LVDVGG +G L +I + P I
Sbjct: 325 GFDHIKKLVDVGGGNGINLNLITSKYPYI 411
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,334,793
Number of Sequences: 7669
Number of extensions: 58897
Number of successful extensions: 1129
Number of sequences better than 1.0e-020: 7
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 202896930
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)