TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115190.2.1
(656 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U41472.1|MSU41472 Medicago sativa pectate lyase homolog ... 52 2e-023
>gb|U41472.1|MSU41472 Medicago sativa pectate lyase homolog gene, complete cds
Length = 3824
Score = 52.4 bits (108), Expect(3) = 2e-023
Identities = 23/55 (41%), Positives = 27/55 (49%)
Frame = -3 / +3
Query: 606 NIAAKVIPKPYAEEGVWKNWVWHTEDDLFMNGAIFNPSGGAPKQVDTNEWVKPKP 442
N A V + YA E VW W W +E D FMNGA F SG K + + KP
Sbjct: 3090 NAAKTVTHRDYAPESVWSKWQWRSEGDHFMNGATFIQSGPPIKNLPFKKGFLMKP 3254
Score = 45.5 bits (93), Expect(3) = 2e-023
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = -3 / +3
Query: 456 VKPKPGTYVTRLTRFSGPLSCCTGKPC*R 370
+KP+ G+ RLTRFSG L+C G+PC*+
Sbjct: 3246 MKPRHGSQANRLTRFSGALNCVVGRPC*K 3332
Score = 42.3 bits (86), Expect(3) = 2e-023
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -3 / +3
Query: 651 APTIISQGNRFIAPPNIAAKVI 586
APTI+SQGNRFIAP N AAK +
Sbjct: 3042 APTILSQGNRFIAPHNNAAKTV 3107
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,895,721
Number of Sequences: 7669
Number of extensions: 86063
Number of successful extensions: 1293
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 163058720
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)