TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2969912.2.1
(507 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512887.1|CO512887 s13dSG20H0700060_121700 Glandular tr... 55 5e-034
gb|CO512956.1|CO512956 s13dSG86G1100084_121838 Glandular tr... 55 4e-033
>gb|CO512887.1|CO512887 s13dSG20H0700060_121700 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 602
Score = 55.1 bits (114), Expect(4) = 5e-034
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = +3 / +1
Query: 258 VKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCW 431
VKDPQ +L+ PA++GTLNV+ + + ++R+V+TSSI+AV N +VV + W
Sbjct: 322 VKDPQAELIDPALKGTLNVLNSCAKSPSLKRLVLTSSIAAVAYNGKPRTPDVVVDETW 495
Score = 54.7 bits (113), Expect(4) = 5e-034
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDH 116
VTGASG+I S LVR LL RGY V+A V DP+D + DH
Sbjct: 76 VTGASGYIASWLVRLLLNRGYTVKATVRDPNDPKKGDH 189
Score = 53.3 bits (110), Expect(4) = 5e-034
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 411 VVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
VVDE +TD D C K+ +WY SKTLAE+AAW
Sbjct: 478 VVDETWFTDADLCAKSNLWYVVSKTLAEEAAW 573
Score = 30.4 bits (60), Expect(4) = 5e-034
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ +GC GVFH ASP
Sbjct: 217 RLQLFKANLLEEGAFDSVVQGCHGVFHTASP 309
>gb|CO512956.1|CO512956 s13dSG86G1100084_121838 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 584
Score = 55.1 bits (114), Expect(4) = 4e-033
Identities = 25/58 (43%), Positives = 39/58 (67%)
Frame = +3 / +1
Query: 258 VKDPQNQLMVPAVEGTLNVVRAXKDAGGVRRVVVTSSISAVVPNPGWPAGEVVDERCW 431
VKDPQ +L+ PA++GTLNV+ + + ++R+V+TSSI+AV N +VV + W
Sbjct: 322 VKDPQAELIDPALKGTLNVLNSCAKSPSLKRLVLTSSIAAVAYNGKPRTPDVVVDETW 495
Score = 53.3 bits (110), Expect(4) = 4e-033
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3 / +1
Query: 411 VVDERCWTDIDYCEKNGVWYPASKTLAEKAAW 506
VVDE +TD D C K+ +WY SKTLAE+AAW
Sbjct: 478 VVDETWFTDADLCAKSNLWYVVSKTLAEEAAW 573
Score = 51.5 bits (106), Expect(4) = 4e-033
Identities = 23/38 (60%), Positives = 27/38 (71%)
Frame = +3 / +1
Query: 3 VTGASGFIGSTLVRGLLGRGYNVRAGVLDPDDRAETDH 116
VTGASG+I S LV LL RGY V+A V DP+D + DH
Sbjct: 76 VTGASGYIASWLV*LLLNRGYTVKATVRDPNDPKKVDH 189
Score = 30.4 bits (60), Expect(4) = 4e-033
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3 / +1
Query: 150 RLSFFRCXXXXXXXXXXXXRGCSGVFHLASP 242
RL F+ +GC GVFH ASP
Sbjct: 217 RLQLFKANLLEEGAFDSVVQGCHGVFHTASP 309
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 1,904,901
Number of Sequences: 7669
Number of extensions: 14997
Number of successful extensions: 711
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 41
effective length of database: 934,139
effective search space used: 118635653
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)