TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2921718.2.1
         (649 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY639647.1|  Medicago sativa GMPase (GMP) mRNA, complete cds   253   1e-068

>gb|AY639647.1| Medicago sativa GMPase (GMP) mRNA, complete cds
          Length = 1181

 Score =  253 bits (548), Expect = 1e-068
 Identities = 98/123 (79%), Positives = 116/123 (94%)
 Frame = +2 / +3

                                                                        
Query: 5    RHEARLASGAHVLGNVLVHETAVIGDGCLIGPDVAVGPGCVVEAGVRLSRCTVMRAARVK 184
            +  ++LA G++++GNV+V ETA IG+GCLIGPDVA+GPGC+VE+GVRLSRCTVMR  R+K
Sbjct: 813  KSSSKLAGGSNIVGNVIVDETAKIGEGCLIGPDVAIGPGCIVESGVRLSRCTVMRGVRIK 992

                                                                        
Query: 185  QHACVSSSIIGWHSTVGKWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKSSILKPEI 364
            +HAC+SSSIIGWHSTVG+WARVENMTILGEDVHVCDEIYSNGGVVLPHKEIK++ILKPEI
Sbjct: 993  KHACISSSIIGWHSTVGQWARVENMTILGEDVHVCDEIYSNGGVVLPHKEIKTNILKPEI 1172

               
Query: 365  VM* 373
            VM*
Sbjct: 1173 VM* 1181




 Score =  185 bits (398), Expect = 5e-048
 Identities = 82/119 (68%), Positives = 91/119 (76%)
 Frame = -2 / -2

                                                                        
Query: 372  HMTISGLRMLDLISLCGSTTPPLL*ISSQTWTSSPRMVMFSTRAHLPTVECQPMMLLETQ 193
            HMTISG R+  LISL G TTPPLL*ISSQT TSSPR+V+FSTRAH PTVEC P++LLE Q
Sbjct: 1180 HMTISGFRIFVLISLWGKTTPPLL*ISSQT*TSSPRIVIFSTRAHCPTVECHPIILLEMQ 1001

                                                                       
Query: 192  ACCLTRAARMTVQRDRRTPASTTQPGPTATSGPMRQPSPMTAVSCTSTLPRTCAPDASL 16
            AC L R  R+TVQR+  TP ST QPGP ATSGPMR PSP+ AVS T T P    P A+L
Sbjct: 1000 ACFLIRTPRITVQRESLTPDSTMQPGPIATSGPMRHPSPIFAVSSTITFPTMLEPPANL 824



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 4,477,333
Number of Sequences: 7669
Number of extensions: 57828
Number of successful extensions: 902
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 160279310
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)