TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2762998.2.1
(1036 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516869.1|CO516869 s13dSG98H0300028_447066 Glandular tr... 108 1e-024
>gb|CO516869.1|CO516869 s13dSG98H0300028_447066 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 453
Score = 108 bits (231), Expect = 1e-024
Identities = 44/135 (32%), Positives = 85/135 (62%)
Frame = -2 / +1
Query: 663 IGLVLSILAMVSAALVELKRLEIARSEGLIHEKAAVPMSILWQIPQYFLVGAAEVFTCIG 484
I + L + A+ AA ++ ++ ++G+ + +P+S+ +PQ+FLVG+ E F G
Sbjct: 34 IAIGLLLSALGMAAASLIEVKRLSVAKGVKGNQTTLPISVFLLVPQFFLVGSGEAFIYTG 213
Query: 483 QVEFFYDQAPDAMRSLCSALALITVSLGNYISSIILTLVSYITTQGGDPGWIPDNLNEGH 304
Q++FF Q+P M+++ + L L T+SLG ++SS ++++V +T GW+ D++N+G
Sbjct: 214 QLDFFITQSPKGMKTMSTGLFLTTLSLGFFVSSFLVSVVKKVTGTRDGQGWLADHINKGR 393
Query: 303 LDRFFWLIAGISFVD 259
LD F+ L+ +SF++
Sbjct: 394 LDLFYALLTILSFIN 438
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,017,651
Number of Sequences: 7669
Number of extensions: 134682
Number of successful extensions: 1116
Number of sequences better than 1.0e-020: 1
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 276559101
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)