TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2750927.2.1
(1331 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA,... 173 3e-044
gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular tr... 107 4e-037
gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular tr... 108 3e-034
gb|CO515922.1|CO515922 s13dSG91H0300028_421383 Glandular tr... 106 1e-026
gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH... 103 4e-023
gb|AF335473.2|AF335473 Medicago sativa MADS box protein-lik... 97 4e-021
gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box pr... 97 5e-021
>gb|U91964.1|MSU91964 Medicago sativa MADS-box protein mRNA, partial cds
Length = 775
Score = 173 bits (373), Expect = 3e-044
Identities = 78/168 (46%), Positives = 107/168 (63%)
Frame = +2 / +1
Query: 218 RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGI 397
RG++++KRIEN NRQV FSKRRNGLLKKA EL++LCDAEV ++IFSS KLY+F S +
Sbjct: 1 RGKIQIKRIENTTNRQVIFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSL 180
Query: 398 TKTLERYQHCCYNAQDSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKE 577
+ RY SE + +E + LR + LQ + R ++GEEL L+VKE
Sbjct: 181 RSVIGRYNKSKEEHNQLGSTASEIKFGQREAAVLRQQLHNLQESHRQIMGEELSGLTVKE 360
Query: 578 LQQLEKQLECALSQARQRKTQLMMEQVEELRRKERHLGEMNRQLKHKL 721
LQ LE QLE +L R +K QL M++++EL RK + + N +L K+
Sbjct: 361 LQGLENQLEISLRGVRMKKEQLFMDEIQELNRKGDIIHQENVELYRKV 504
>gb|CO516725.1|CO516725 s13dSG74F0300027_446778 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 501
Score = 107 bits (228), Expect(2) = 4e-037
Identities = 45/59 (76%), Positives = 52/59 (88%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 388
MGR +V+LKRIE+KINRQVTFSKRR GLLKKA E+SVLCDAEVALIIFS GKL+ + +
Sbjct: 91 MGRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFNYST 267
Score = 62.9 bits (131), Expect(2) = 4e-037
Identities = 25/48 (52%), Positives = 35/48 (72%)
Frame = +2 / +1
Query: 470 QSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECAL 613
++W E ++L+AK E L+R QRH LGE+L +S KELQ LE+QL+ L
Sbjct: 358 ENWTMEYTRLKAKIELLERNQRHYLGEDLDSMSHKELQSLEQQLDTGL 501
>gb|CO515945.1|CO515945 s13dSG61B0400029_445218 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 417
Score = 108 bits (230), Expect(2) = 3e-034
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +2 / +2
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 388
MGR +V+LKRIE+KINRQVTFSKRR GLLKKA E+SVLCDAEVALIIFS GKL+++ +
Sbjct: 32 MGRSKVQLKRIESKINRQVTFSKRRTGLLKKAKEISVLCDAEVALIIFSDNGKLFDYST 208
Score = 52.4 bits (108), Expect(2) = 3e-034
Identities = 20/38 (52%), Positives = 28/38 (73%)
Frame = +2 / +2
Query: 470 QSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQ 583
++W E ++L+AK E L+R QRH LGE+L +S KELQ
Sbjct: 299 ENWTMEYTRLKAKIELLERNQRHYLGEDLNSMSHKELQ 412
>gb|CO515922.1|CO515922 s13dSG91H0300028_421383 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 465
Score = 106 bits (227), Expect(2) = 1e-026
Identities = 45/94 (47%), Positives = 69/94 (73%)
Frame = +2 / +1
Query: 443 DSNGALSETQSWYQEMSKLRAKFEALQRTQRHLLGEELGPLSVKELQQLEKQLECALSQA 622
D ++ + S QE KL+A++E+LQRTQR+L+GE+LGPLS K+L+ LE+QL+ +L Q
Sbjct: 34 DLTFSMKKELSSQQEYLKLKARYESLQRTQRNLMGEDLGPLSSKDLETLERQLDSSLKQI 213
Query: 623 RQRKTQLMMEQVEELRRKERHLGEMNRQLKHKLE 724
R +TQ M++Q+ +L+RKE L E NR L+ ++E
Sbjct: 214 RSTRTQFMLDQLGDLQRKEHLLCEANRALRQRME 315
Score = 28.1 bits (55), Expect(2) = 1e-026
Identities = 9/11 (81%), Positives = 11/11 (100%)
Frame = +2 / +1
Query: 848 MDCEPTLQIGY 880
++CEPTLQIGY
Sbjct: 421 IECEPTLQIGY 453
>gb|AF042068.1|AF042068 Medicago sativa MADS-box protein NMH 7 (nmh 7) gene, complete cds
Length = 6359
Score = 103 bits (220), Expect = 4e-023
Identities = 42/64 (65%), Positives = 56/64 (87%)
Frame = +2 / +2
Query: 191 S*RSYVAMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGK 370
S* Y+AM RG++++KRIEN NRQVT+SKRR+GL KKA EL+VLCDA+V++I+FSS GK
Sbjct: 1133 S*VGYLAMARGKIQIKRIENTTNRQVTYSKRRDGLFKKANELTVLCDAKVSIIMFSSTGK 1312
Query: 371 LYEF 382
L+E+
Sbjct: 1313 LHEY 1324
>gb|AF335473.2|AF335473 Medicago sativa MADS box protein-like protein NGL9 mRNA, complete
cds
Length = 801
Score = 97.3 bits (206), Expect = 4e-021
Identities = 38/63 (60%), Positives = 53/63 (84%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 391
MGRG++E+KRIEN NRQVT+SKR++G+LKKA E++VLCDA+V+ IIF+ GK++E+ S
Sbjct: 1 MGRGKIEIKRIENSSNRQVTYSKRKSGILKKANEINVLCDAQVSTIIFAPSGKMHEYISP 180
Query: 392 GIT 400
T
Sbjct: 181 STT 189
>gb|L41727.1|ALFMBP Medicago sativa (clone nmh7) MADS-box protein mRNA, complete cds
Length = 965
Score = 96.8 bits (205), Expect = 5e-021
Identities = 38/57 (66%), Positives = 50/57 (87%)
Frame = +2 / +1
Query: 212 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF 382
M RG++++KRIEN NRQV +SKRRNGL KKA EL+VLCDA+V++I+FSS GKL+E+
Sbjct: 1 MARGKIQIKRIENTTNRQVIYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEY 171
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 12,206,162
Number of Sequences: 7669
Number of extensions: 184924
Number of successful extensions: 1365
Number of sequences better than 1.0e-020: 8
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 363541668
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)