TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2621963.2.1
(743 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF028841.1|AF028841 Medicago sativa proline-rich cell wa... 145 5e-036
gb|L22305.1|ALFCORC Medicago sativa bimodular protein (corC... 87 2e-024
gb|CO514798.1|CO514798 s13dSG59C1200098_328256 Glandular tr... 90 6e-021
>gb|AF028841.1|AF028841 Medicago sativa proline-rich cell wall protein gene, complete cds
Length = 3617
Score = 145 bits (312), Expect = 5e-036
Identities = 56/86 (65%), Positives = 68/86 (79%)
Frame = +1 / +2
Query: 106 AVRTCPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLL 285
A +TC ID LKL ACVDVL GLIH+ IG A+ CCPL+QG+ DLDAA+CLCTTIR +LL
Sbjct: 2429 AQQTCSIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLQGLVDLDAAICLCTTIRLKLL 2608
Query: 286 NINIYLPIALNLLITCGKHAPSGFQC 363
NIN+ +P+AL +LI CGK P GF+C
Sbjct: 2609 NINLVIPLALQVLIDCGKTPPEGFKC 2686
>gb|L22305.1|ALFCORC Medicago sativa bimodular protein (corC) mRNA, complete cds
Length = 872
Score = 87.2 bits (184), Expect(3) = 2e-024
Identities = 31/55 (56%), Positives = 46/55 (83%)
Frame = +1 / +3
Query: 166 GLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINIYLPIALNLLIT 330
GL+++++G A SKCC L+QG+ADLDAA+CLCT I+A +L IN+ +PI L+LL++
Sbjct: 327 GLVNVIVGSPASSKCCTLIQGLADLDAAVCLCTAIKANILGINLNVPITLSLLLS 491
Score = 31.3 bits (62), Expect(3) = 2e-024
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1 / +3
Query: 118 CPIDTLKLNACVDVL 162
CP DTLKL C DVL
Sbjct: 282 CPTDTLKLGVCADVL 326
Score = 25.8 bits (50), Expect(3) = 2e-024
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1 / +3
Query: 319 LLITCGKHAPSGFQC 363
LL C K P+GFQC
Sbjct: 483 LLSACEKSIPNGFQC 527
>gb|CO514798.1|CO514798 s13dSG59C1200098_328256 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 388
Score = 90.0 bits (190), Expect(2) = 6e-021
Identities = 34/71 (47%), Positives = 52/71 (73%)
Frame = +1 / +1
Query: 118 CPIDTLKLNACVDVLSGLIHLVIGQEARSKCCPLVQGVADLDAALCLCTTIRARLLNINI 297
CP DTLKL C D+L + ++ + SKCC L++G+ADL+AALCLCT ++A +L IN+
Sbjct: 169 CPKDTLKLGVCADLLGLVNGVIGNPPSGSKCCALIKGLADLEAALCLCTALKANVLGINL 348
Query: 298 YLPIALNLLIT 330
+PI L++L++
Sbjct: 349 NVPITLSVLLS 381
Score = 24.9 bits (48), Expect(2) = 6e-021
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2 / +2
Query: 44 SPRRLGHHHPTCH 82
SP+ +GHHH + H
Sbjct: 92 SPKLIGHHHQSQH 130
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,122,471
Number of Sequences: 7669
Number of extensions: 60024
Number of successful extensions: 1099
Number of sequences better than 1.0e-020: 3
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 189926350
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)