TBLASTX 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2621801.2.1
         (679 letters)

Database: MedicagoSativa_nucl_with_EST.fasta 
           7669 sequences; 3,745,706 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY912107.1|  Medicago satvia SSR marker Agat004 sequence        82   3e-028

>gb|AY912107.1| Medicago satvia SSR marker Agat004 sequence
          Length = 594

 Score = 81.7 bits (172), Expect(2) = 3e-028
 Identities = 32/38 (84%), Positives = 35/38 (92%)
 Frame = -3 / -3

                                                 
Query: 212 FGGYKMSGVGREKGIYALRNYLQTKAVVTPIKNPAWL* 99
           FGGYKMSG GREKG Y+L+NYLQ KAVVTP+KNPAWL*
Sbjct: 505 FGGYKMSGQGREKGEYSLKNYLQVKAVVTPLKNPAWL* 392




 Score = 57.9 bits (120), Expect(2) = 3e-028
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = -3 / -1

                                         
Query: 302 SLDAANTLSRALRAGTVWVNCYDVFDATIP 213
           ++D ANTL+RAL+ GTVWVNC+D FDA  P
Sbjct: 594 NIDTANTLTRALKVGTVWVNCFDTFDAAXP 505



  Database: MedicagoSativa_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:23 PM
  Number of letters in database: 3,745,706
  Number of sequences in database:  7669
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 4,218,220
Number of Sequences: 7669
Number of extensions: 46725
Number of successful extensions: 940
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 169544010
frameshift window, decay const: 40,  0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)