TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542097.2.1
(887 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513304.1|CO513304 s13dSG37D1100090_129772 Glandular tr... 188 9e-049
gb|CO514845.1|CO514845 s13dSG56A0400033_328350 Glandular tr... 188 9e-049
gb|CO514802.1|CO514802 s13dSG59D0500046_328264 Glandular tr... 159 3e-044
gb|CO511985.1|CO511985 s13dSG07D0900078_103870 Glandular tr... 156 4e-039
gb|CO514230.1|CO514230 s13dSG76A1000069_157122 Glandular tr... 153 4e-038
>gb|CO513304.1|CO513304 s13dSG37D1100090_129772 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 526
Score = 188 bits (405), Expect = 9e-049
Identities = 79/103 (76%), Positives = 85/103 (82%)
Frame = +3 / +1
Query: 150 VSRSVKAGLQFPVGRIGRYLKQGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 329
V+RS++AGLQFPVGRIGRYLK+GRY+QRVGTGAP GNAARDNK
Sbjct: 163 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 342
Query: 330 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 458
KNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 343 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 471
Score = 96.8 bits (205), Expect(2) = 2e-023
Identities = 43/80 (53%), Positives = 47/80 (58%)
Frame = -2 / -3
Query: 469 AVFLGSSTGLMLGRTPPCAMVTPAXXXXXXXXXXXXXSTCRGMIRFFLLSRAAFPANXXX 290
+VFLG TGLM GRTPPCA+VTPA +TC G+I FFLLSRAAFPAN
Sbjct: 482 SVFLGKRTGLMFGRTPPCAIVTPANNFPSSSSFLTANNTCLGIILFFLLSRAAFPANSRT 303
Query: 289 XXXXXXXXXXXXTGAPVPTR 230
TGAPVPTR
Sbjct: 302 SAARYSRTAAR*TGAPVPTR 243
Score = 26.7 bits (52), Expect(2) = 2e-023
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / -3
Query: 187 TGNWRPAFTERETGFFLG 134
TGN RPA + T FFLG
Sbjct: 200 TGN*RPALMDLVTDFFLG 147
>gb|CO514845.1|CO514845 s13dSG56A0400033_328350 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 497
Score = 188 bits (405), Expect = 9e-049
Identities = 79/103 (76%), Positives = 85/103 (82%)
Frame = +3 / +3
Query: 150 VSRSVKAGLQFPVGRIGRYLKQGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 329
V+RS++AGLQFPVGRIGRYLK+GRY+QRVGTGAP GNAARDNK
Sbjct: 162 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 341
Query: 330 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 458
KNRIIPRHVLLA+RNDEELGKLLAGVTIAHGGVLPNINPVLLP
Sbjct: 342 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLP 470
Score = 96.8 bits (205), Expect(2) = 2e-023
Identities = 43/80 (53%), Positives = 47/80 (58%)
Frame = -2 / -2
Query: 469 AVFLGSSTGLMLGRTPPCAMVTPAXXXXXXXXXXXXXSTCRGMIRFFLLSRAAFPANXXX 290
+VFLG TGLM GRTPPCA+VTPA +TC G+I FFLLSRAAFPAN
Sbjct: 481 SVFLGKRTGLMFGRTPPCAIVTPANNFPSSSSFLTANNTCLGIILFFLLSRAAFPANSRT 302
Query: 289 XXXXXXXXXXXXTGAPVPTR 230
TGAPVPTR
Sbjct: 301 SAARYSRTAAR*TGAPVPTR 242
Score = 26.7 bits (52), Expect(2) = 2e-023
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2 / -2
Query: 187 TGNWRPAFTERETGFFLG 134
TGN RPA + T FFLG
Sbjct: 199 TGN*RPALMDLVTDFFLG 146
>gb|CO514802.1|CO514802 s13dSG59D0500046_328264 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 527
Score = 159 bits (341), Expect(2) = 3e-044
Identities = 66/91 (72%), Positives = 73/91 (80%)
Frame = +3 / +1
Query: 150 VSRSVKAGLQFPVGRIGRYLKQGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 329
V+RS++AGLQFPVGR+GRYLK+GRY+QRVGTGAP GNAARDNK
Sbjct: 163 VTRSIRAGLQFPVGRVGRYLKKGRYAQRVGTGAPVYLAAGLEYLAAEGLELAGNAARDNK 342
Query: 330 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHG 422
KNRIIPRHVLLA+RNDEELGKLLAGVTIAHG
Sbjct: 343 KNRIIPRHVLLAVRNDEELGKLLAGVTIAHG 435
Score = 34.5 bits (69), Expect(2) = 3e-044
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3 / +2
Query: 420 GGVLPNINPVLLP 458
GGVLPNINPVLLP
Sbjct: 434 GGVLPNINPVLLP 472
>gb|CO511985.1|CO511985 s13dSG07D0900078_103870 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 611
Score = 156 bits (335), Expect = 4e-039
Identities = 66/103 (64%), Positives = 75/103 (72%)
Frame = +3 / +3
Query: 150 VSRSVKAGLQFPVGRIGRYLKQGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 329
VSRS KAGLQFPVGRI R+LK G+Y++RVG GAP GNAARDNK
Sbjct: 153 VSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNK 332
Query: 330 KNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLP 458
KNRI+PRH+ LA+RNDEEL KLL VTIA+GGVLPNI+ LLP
Sbjct: 333 KNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQTLLP 461
>gb|CO514230.1|CO514230 s13dSG76A1000069_157122 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 431
Score = 153 bits (328), Expect = 4e-038
Identities = 65/89 (73%), Positives = 71/89 (79%)
Frame = +3 / +1
Query: 150 VSRSVKAGLQFPVGRIGRYLKQGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNK 329
V+RS++AGLQFPVGRIGRYLK+GRY+QRVGTGAP GNAARDNK
Sbjct: 163 VTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNK 342
Query: 330 KNRIIPRHVLLAIRNDEELGKLLAGVTIA 416
KNRIIPRHVLLA+RNDEELGKLLAGVTIA
Sbjct: 343 KNRIIPRHVLLAVRNDEELGKLLAGVTIA 429
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,006,939
Number of Sequences: 7669
Number of extensions: 59651
Number of successful extensions: 1740
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 234396910
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)