TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521556.2.1
(1267 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular tr... 104 7e-042
gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular tr... 111 8e-041
gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular tr... 157 3e-039
gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular tr... 156 6e-039
gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular tr... 153 5e-038
gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular tr... 149 5e-037
gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular tr... 101 6e-035
gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular tr... 112 7e-034
gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular tr... 111 5e-033
gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular tr... 103 9e-033
gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular tr... 111 1e-032
gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular tr... 133 6e-032
gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x va... 129 6e-031
gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular tr... 104 3e-030
gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x va... 127 4e-030
gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular tr... 103 2e-029
gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular tr... 101 4e-029
gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Ka... 99 1e-028
gb|CO514214.1|CO514214 s13dSG70G0900068_157090 Glandular tr... 108 2e-024
>gb|CO512932.1|CO512932 s13dSG86E0600039_121790 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 569
Score = 104 bits (222), Expect(3) = 7e-042
Identities = 40/75 (53%), Positives = 56/75 (74%)
Frame = +2 / +2
Query: 98 LFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPE 277
L G W S + RV+ AL+LKG++++YVEED+ NK+ LL NPVHKKVPVLVH + + E
Sbjct: 44 LVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKKVPVLVHAQKPIAE 223
Query: 278 SVIILQYLDDAWPET 322
S IIL+Y+D+ W ++
Sbjct: 224 SFIILEYIDETWKQS 268
Score = 61.1 bits (127), Expect(3) = 7e-042
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +2 / +2
Query: 326 PLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQEAAVRQVHENLALIESELR 499
PLLP ++RALARFW FA+ KL A ++GE+QE A++ E + IE E++
Sbjct: 269 PLLPQHPYERALARFWADFAEQKLLNAAWIAMCNSGEEQEKALKVAREAIEKIEEEIK 442
Score = 38.6 bits (78), Expect(3) = 7e-042
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2 / +2
Query: 536 DEVGLLDVVLGCGSYWLAVFEEV 604
D +G LD+ LG SYWL VFEEV
Sbjct: 464 DNIGYLDLALGWISYWLPVFEEV 532
>gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 111 bits (237), Expect(2) = 8e-041
Identities = 42/80 (52%), Positives = 60/80 (75%)
Frame = +2 / +2
Query: 80 AASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHG 259
A L L G W S + RV+ AL LKG+++ YVEED NKSD LL++NPV++KVPVLVH
Sbjct: 38 AGDSLTLLGFWGSPFVLRVKWALELKGIQYQYVEEDFRNKSDMLLQYNPVYRKVPVLVHD 217
Query: 260 GRALPESVIILQYLDDAWPE 319
G+++ ES++IL+Y+D+ W +
Sbjct: 218 GKSISESLVILEYVDEIWKQ 277
Score = 71.2 bits (149), Expect(2) = 8e-041
Identities = 29/57 (50%), Positives = 37/57 (64%)
Frame = +2 / +2
Query: 326 PLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQEAAVRQVHENLALIESEL 496
PLLP D ++RA ARFW FADDK PA F GE+Q+ A ++ ENL ++ES L
Sbjct: 281 PLLPHDPYERAKARFWAKFADDKCVPAFIATFFKIGEEQQKAAQEARENLKILESGL 451
>gb|CO512411.1|CO512411 s13dSG80F0100011_114336 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 578
Score = 157 bits (337), Expect = 3e-039
Identities = 63/140 (45%), Positives = 94/140 (67%)
Frame = +2 / +1
Query: 83 ASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGG 262
A ++L SWAS + R+++AL KG++ +Y EEDL NKS LL+ NPVHKK+PVL+H G
Sbjct: 79 ADEVILLDSWASPFGMRLRIALAEKGIKHEYKEEDLSNKSPLLLQMNPVHKKIPVLIHNG 258
Query: 263 RALPESVIILQYLDDAWPETRPLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQ 442
+ + ES++ +QY+D+ W E PLLP+D + R+ ARFW + D K+ ++A GE+Q
Sbjct: 259 KPICESLVAVQYIDEVWNEKSPLLPSDPYQRSRARFWADYVDKKIYEGGRNLWAKKGEEQ 438
Query: 443 EAAVRQVHENLALIESELRD 502
E A ++ + L L+E EL D
Sbjct: 439 EDAKKEFIDVLKLLEQELGD 498
>gb|CO512017.1|CO512017 s13dSG07H0100016_103934 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 156 bits (335), Expect = 6e-039
Identities = 64/140 (45%), Positives = 93/140 (66%)
Frame = +2 / +2
Query: 83 ASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGG 262
A+ ++L W S + RV++AL KG++ +Y EEDL NKS LL+ NPVHKK+PVL+H G
Sbjct: 71 ANEVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNG 250
Query: 263 RALPESVIILQYLDDAWPETRPLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQ 442
+ + ES+I +QY+D+ W E PLLP+D + R+ ARFW + D K+ ++ GE+Q
Sbjct: 251 KPICESLIAVQYIDEVWNEKSPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQ 430
Query: 443 EAAVRQVHENLALIESELRD 502
EAA ++ E L L+E EL D
Sbjct: 431 EAAKKEFIEALKLLEQELGD 490
>gb|CO512266.1|CO512266 s13dSG03H1100092_114046 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 573
Score = 153 bits (328), Expect = 5e-038
Identities = 63/140 (45%), Positives = 91/140 (65%)
Frame = +2 / +3
Query: 83 ASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGG 262
A ++L W S + RV++AL KG++ +Y EEDL NKS LL+ NPVHKK+PVL+H G
Sbjct: 87 ADEVILLDYWVSPFGIRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNG 266
Query: 263 RALPESVIILQYLDDAWPETRPLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQ 442
+ + ES+I QY+D+ W + PLLP+D + R+ ARFW + D K+ ++ GE+Q
Sbjct: 267 KPICESLIAAQYIDEVWNDKSPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQ 446
Query: 443 EAAVRQVHENLALIESELRD 502
EAA ++ E L L+E EL D
Sbjct: 447 EAAKKEFIEALKLLEQELGD 506
>gb|CO512012.1|CO512012 s13dSG07G0600052_103924 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 506
Score = 149 bits (321), Expect = 5e-037
Identities = 61/138 (44%), Positives = 91/138 (65%)
Frame = +2 / +2
Query: 83 ASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGG 262
A ++L W S + RV++AL KG++ +Y EEDL NKS LL+ +PVHKK+PVL+H G
Sbjct: 89 ADGVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMDPVHKKIPVLIHNG 268
Query: 263 RALPESVIILQYLDDAWPETRPLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQ 442
+ + ES+I +QY+D+ W + PLLP+D + R+ ARFW + D K+ ++ GE+Q
Sbjct: 269 KPICESLIAVQYIDEVWNDKSPLLPSDPYQRSQARFWADYVDKKIYEVGRNLWTKKGEEQ 448
Query: 443 EAAVRQVHENLALIESEL 496
EAA ++ E L L+E EL
Sbjct: 449 EAAKKEFIEALKLLEQEL 502
>gb|CO512672.1|CO512672 s13dSG19C0200006_121270 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 565
Score = 101 bits (216), Expect(2) = 6e-035
Identities = 39/75 (52%), Positives = 55/75 (73%)
Frame = +2 / +2
Query: 98 LFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPE 277
L G W S + RV+ AL+LKG++++YVEED+ NK+ LL NPVHKKVPVLVH + + E
Sbjct: 98 LVGFWVSPFVKRVEWALKLKGVDYEYVEEDIFNKTPLLLELNPVHKKVPVLVHAQKPIAE 277
Query: 278 SVIILQYLDDAWPET 322
IIL+Y+D+ W ++
Sbjct: 278 LFIILEYIDETWKQS 322
Score = 61.1 bits (127), Expect(2) = 6e-035
Identities = 25/58 (43%), Positives = 36/58 (62%)
Frame = +2 / +2
Query: 326 PLLPADAFDRALARFWCHFADDKLGPAVGTVFASTGEDQEAAVRQVHENLALIESELR 499
PLLP ++RALARFW FA+ KL A ++GE+QE A++ E + IE E++
Sbjct: 323 PLLPQHPYERALARFWADFAEQKLLNAARIAMCNSGEEQEKALKVAREAIEKIEEEIK 496
>gb|CO516142.1|CO516142 s13dSG65H0600060_445612 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 112 bits (239), Expect(2) = 7e-034
Identities = 43/80 (53%), Positives = 60/80 (75%)
Frame = +2 / +1
Query: 80 AASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHG 259
A L L G W S + RV+ AL LKG+++ YVEED NKSD LL++NPV+KKVPVLVH
Sbjct: 40 AGDSLTLLGFWGSPFVLRVKWALELKGVQYQYVEEDFRNKSDMLLQYNPVYKKVPVLVHD 219
Query: 260 GRALPESVIILQYLDDAWPE 319
G+++ ES++IL+Y+D+ W +
Sbjct: 220 GKSISESLVILEYVDEIWKQ 279
Score = 46.9 bits (96), Expect(2) = 7e-034
Identities = 18/27 (66%), Positives = 20/27 (74%)
Frame = +2 / +1
Query: 326 PLLPADAFDRALARFWCHFADDKLGPA 406
PLLP D ++RA ARFW FADDK PA
Sbjct: 283 PLLPHDPYERAKARFWAKFADDKCVPA 363
>gb|CO511777.1|CO511777 s13dSG01H1100096_103454 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 111 bits (238), Expect(2) = 5e-033
Identities = 41/74 (55%), Positives = 58/74 (78%)
Frame = +2 / +2
Query: 92 LMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRAL 271
+ L G S + RVQ+AL+LKG+E+ Y+EE+L NKSD LL++NP+HKKVPV VH G+ L
Sbjct: 113 VQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPL 292
Query: 272 PESVIILQYLDDAW 313
ES++IL+Y+D+ W
Sbjct: 293 AESLVILEYIDETW 334
Score = 44.6 bits (91), Expect(2) = 5e-033
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +2 / +2
Query: 317 ETRPLLPADAFDRALARFWCHFADDKLGPAV 409
E P+ P +++ALARFW F DDK+ PA+
Sbjct: 335 ENYPIFPQQPYEKALARFWSRFIDDKILPAI 427
>gb|CO513560.1|CO513560 s13dSG12H0800064_139902 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 585
Score = 103 bits (220), Expect(3) = 9e-033
Identities = 38/74 (51%), Positives = 58/74 (78%)
Frame = +2 / +3
Query: 98 LFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPE 277
LFG S ++ RV++AL+LKG+E+ Y EE GN SD ++++NPV+KKVPVLVH G+ + E
Sbjct: 72 LFGLVGSPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPISE 251
Query: 278 SVIILQYLDDAWPE 319
S++IL+Y+D+ W +
Sbjct: 252 SLVILEYIDETWKQ 293
Score = 42.8 bits (87), Expect(3) = 9e-033
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +3
Query: 326 PLLPADAFDRALARFWCHFADDK 394
P+LP+D + RALARFW F DDK
Sbjct: 297 PILPSDPYKRALARFWSKFIDDK 365
Score = 31.3 bits (62), Expect(3) = 9e-033
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2 / +3
Query: 536 DEVGLLDVVLGCGSYWLAVFEEVTGVR 616
DE+GL+D+ + W + +EVTG++
Sbjct: 492 DEIGLIDITAVFIAXWFPIVQEVTGLK 572
>gb|CO515660.1|CO515660 s13dSG60C0900070_419469 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 111 bits (238), Expect(2) = 1e-032
Identities = 41/74 (55%), Positives = 58/74 (78%)
Frame = +2 / +1
Query: 92 LMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRAL 271
+ L G S + RVQ+AL+LKG+E+ Y+EE+L NKSD LL++NP+HKKVPV VH G+ L
Sbjct: 112 VQLLGVGGSPFVRRVQIALKLKGIEYTYIEENLRNKSDLLLKYNPIHKKVPVFVHNGKPL 291
Query: 272 PESVIILQYLDDAW 313
ES++IL+Y+D+ W
Sbjct: 292 AESLVILEYIDETW 333
Score = 43.2 bits (88), Expect(2) = 1e-032
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2 / +1
Query: 317 ETRPLLPADAFDRALARFWCHFADDKLGPAV 409
E P+ P + +ALARFW F DDK+ PA+
Sbjct: 334 ENYPIFPQQPYGKALARFWSRFIDDKILPAI 426
>gb|CO513935.1|CO513935 s13dSG71D0500042_156532 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 415
Score = 133 bits (284), Expect = 6e-032
Identities = 51/105 (48%), Positives = 74/105 (70%)
Frame = +2 / +2
Query: 83 ASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGG 262
A+ ++L W S + RV++AL KG++ +Y EEDL NKS LL+ NPVHKK+PVL+H G
Sbjct: 74 ANEVILLDYWVSPFGMRVRIALAEKGIKHEYREEDLRNKSPLLLQMNPVHKKIPVLIHNG 253
Query: 263 RALPESVIILQYLDDAWPETRPLLPADAFDRALARFWCHFADDKL 397
+ + ES+I +QY+D+ W E PLLP+D + R+ ARFW + D K+
Sbjct: 254 KPICESLIAVQYIDEVWNEKSPLLPSDPYQRSQARFWADYVDKKI 388
>gb|AJ888486.1|AJ888486 AJ888486 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 777
Score = 129 bits (277), Expect = 6e-031
Identities = 52/108 (48%), Positives = 73/108 (67%)
Frame = +2 / +1
Query: 179 EEDLGNKSDELLRHNPVHKKVPVLVHGGRALPESVIILQYLDDAWPETRPLLPADAFDRA 358
EEDL NKS LL NPVHKK+PVL+H G+ + ES+I +QY+D+ W + PLLP+D + R+
Sbjct: 7 EEDLSNKSPLLLXMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNDKSPLLPSDPYQRS 186
Query: 359 LARFWCHFADDKLGPAVGTVFASTGEDQEAAVRQVHENLALIESELRD 502
ARFW + D K+ ++AS GE+QE A ++ + L L+E EL D
Sbjct: 187 QARFWADYVDKKIYEGGRNLWASKGEEQEVAKKEFIDVLKLLEQELGD 330
>gb|CO516002.1|CO516002 s13dSG61G0700056_445332 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 482
Score = 104 bits (222), Expect(2) = 3e-030
Identities = 37/74 (50%), Positives = 58/74 (78%)
Frame = +2 / +3
Query: 98 LFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPE 277
L G+ S + RVQ+AL+LKG+E+++ EE+L KS++LL++NPVHKKVPV VH + + E
Sbjct: 84 LLGATGSPFVCRVQIALKLKGIEYEFAEENLATKSEQLLKYNPVHKKVPVFVHNEKPISE 263
Query: 278 SVIILQYLDDAWPE 319
S++IL+Y+D+ W +
Sbjct: 264 SLVILEYIDEVWKQ 305
Score = 42.3 bits (86), Expect(2) = 3e-030
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2 / +3
Query: 326 PLLPADAFDRALARFWCHFADDKL 397
P+LP+D RALARFW F DDK+
Sbjct: 309 PILPSDPHQRALARFWSKFIDDKI 380
>gb|AJ888508.1|AJ888508 AJ888508 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 739
Score = 127 bits (271), Expect = 4e-030
Identities = 50/108 (46%), Positives = 73/108 (67%)
Frame = +2 / +1
Query: 179 EEDLGNKSDELLRHNPVHKKVPVLVHGGRALPESVIILQYLDDAWPETRPLLPADAFDRA 358
+EDL NKS LL+ NPVHKK+PVL+H G+ + ES+I +QY+D+ W + PLLP+D + R+
Sbjct: 7 KEDLSNKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIDEVWNDKSPLLPSDPYQRS 186
Query: 359 LARFWCHFADDKLGPAVGTVFASTGEDQEAAVRQVHENLALIESELRD 502
ARFW + D K+ ++A GE+QE A ++ + L L+E EL D
Sbjct: 187 QARFWADYVDKKIYEGGRNLWAKKGEEQEVAKKEFIDVLKLLEQELGD 330
>gb|CO516448.1|CO516448 s13dSG28A0500034_446224 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 514
Score = 103 bits (219), Expect(2) = 2e-029
Identities = 38/74 (51%), Positives = 57/74 (77%)
Frame = +2 / +2
Query: 98 LFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPE 277
L G S + RVQ+AL+ KG+E+++V+EDL NKSD LL++NPVHKK+PV VH + + E
Sbjct: 101 LLGIVGSPFFCRVQIALKFKGIEYEFVKEDLTNKSDLLLKYNPVHKKIPVFVHNEKPISE 280
Query: 278 SVIILQYLDDAWPE 319
S++IL+Y+D+ W +
Sbjct: 281 SLVILEYIDEVWKQ 322
Score = 41.4 bits (84), Expect(2) = 2e-029
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2 / +2
Query: 326 PLLPADAFDRALARFWCHFADDKL 397
P+LP+D + ++LARFW F DDK+
Sbjct: 326 PILPSDPYQKSLARFWSKFIDDKI 397
>gb|CO512339.1|CO512339 s13dSG68G0900068_114192 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 515
Score = 101 bits (216), Expect(2) = 4e-029
Identities = 38/74 (51%), Positives = 56/74 (75%)
Frame = +2 / +2
Query: 98 LFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPE 277
L G S + RVQ AL+ KG+E+++V+EDL NKSD LL++NPVHKK+PV VH + + E
Sbjct: 101 LLGIVGSPFFCRVQTALKFKGIEYEFVKEDLTNKSDLLLKYNPVHKKIPVFVHNEKPISE 280
Query: 278 SVIILQYLDDAWPE 319
S++IL+Y+D+ W +
Sbjct: 281 SLVILEYIDEVWKQ 322
Score = 41.4 bits (84), Expect(2) = 4e-029
Identities = 13/24 (54%), Positives = 19/24 (79%)
Frame = +2 / +2
Query: 326 PLLPADAFDRALARFWCHFADDKL 397
P+LP+D + ++LARFW F DDK+
Sbjct: 326 PILPSDPYQKSLARFWSKFIDDKI 397
>gb|AJ410143.1|AJ410143 AJ410143 Medicago sativa library (Kalo P) Medicago sativa cDNA
clone U62, mRNA sequence
Length = 822
Score = 98.7 bits (209), Expect(2) = 1e-028
Identities = 35/68 (51%), Positives = 55/68 (80%)
Frame = +2 / +1
Query: 116 SSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGGRALPESVIILQ 295
S ++ RV++AL+LKG+E+ Y EE GN SD ++++NPV+KKVPVLVH G+ + ES++IL+
Sbjct: 10 SPFSTRVEIALKLKGVEYKYEEEKQGNLSDTVIKYNPVYKKVPVLVHNGKPISESLVILE 189
Query: 296 YLDDAWPE 319
Y+D+ W +
Sbjct: 190 YIDETWKQ 213
Score = 42.8 bits (87), Expect(2) = 1e-028
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2 / +1
Query: 326 PLLPADAFDRALARFWCHFADDK 394
P+LP+D + RALARFW F DDK
Sbjct: 217 PILPSDPYKRALARFWSKFIDDK 285
>gb|CO514214.1|CO514214 s13dSG70G0900068_157090 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 344
Score = 108 bits (230), Expect = 2e-024
Identities = 43/97 (44%), Positives = 65/97 (67%)
Frame = +2 / +3
Query: 83 ASPLMLFGSWASSYTHRVQLALRLKGLEFDYVEEDLGNKSDELLRHNPVHKKVPVLVHGG 262
A+ ++L A + RV++AL K +++Y EEDL NKS LL+ NP+HKK+PVL+H G
Sbjct: 54 ANEVVLLDGGAXMFGMRVRIALXEKSGKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNG 233
Query: 263 RALPESVIILQYLDDAWPETRPLLPADAFDRALARFW 373
+ + ES II QY+D+ W + +P+ ++RA ARFW
Sbjct: 234 KPIWESAIIGQYIDEVWNDKASFMPSHPYERAQARFW 344
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 7,519,719
Number of Sequences: 7669
Number of extensions: 93114
Number of successful extensions: 4980
Number of sequences better than 1.0e-020: 24
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 347306778
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)