TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485885.2.1
(1063 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516956.1|CO516956 s13dSG81A0400021_468458 Glandular tr... 95 1e-035
gb|CO513961.1|CO513961 s13dSG71F0900075_156584 Glandular tr... 69 4e-022
>gb|CO516956.1|CO516956 s13dSG81A0400021_468458 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 368
Score = 94.5 bits (200), Expect(2) = 1e-035
Identities = 37/63 (58%), Positives = 46/63 (73%)
Frame = +1 / +1
Query: 292 NLAELLPADFLARTKDRGLVWPTKAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVP 471
+L LLP F RTK++G+V APQ +L H ++GGFVTHCGWNSVLE++ GVPMV
Sbjct: 175 SLDGLLPEGFRERTKEKGMVVRNWAPQGAVLKHDSIGGFVTHCGWNSVLEAVCEGVPMVA 354
Query: 472 WPL 480
WPL
Sbjct: 355 WPL 363
Score = 74.8 bits (157), Expect(2) = 1e-022
Identities = 32/67 (47%), Positives = 41/67 (61%)
Frame = -3 / -1
Query: 485 APSGHGTIGTPCQRLSRTEFQPQCVTKPPTAAWASISFCGALVGHTSPLSFVLAKKSAGS 306
A +GH TIGTP S TEF PQCVT PP + S + CGA T P SFVL++ +G+
Sbjct: 368 AYNGHATIGTPSHTASNTEFHPQCVTNPPIESCFSTAPCGAQFLTTMPFSFVLSRNPSGN 189
Query: 305 SSARFPS 285
+ +R S
Sbjct: 188 NPSRLSS 168
Score = 70.3 bits (147), Expect(2) = 1e-035
Identities = 28/48 (58%), Positives = 35/48 (72%)
Frame = +1 / +1
Query: 109 CVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
C+ WL+SQP SVV L FGS G F+ Q +EIA GL++S RFLWV+R
Sbjct: 7 CLSWLESQPSQSVVLLSFGSMGRFSKAQINEIARGLEKSEQRFLWVVR 150
Score = 46.4 bits (95), Expect(2) = 1e-022
Identities = 23/47 (48%), Positives = 26/47 (55%)
Frame = -3 / -1
Query: 248 STHRNRCPLRSRPCAISCAWGAVKQPPLPKHRNTTELGGCESSQRTH 108
+TH+N C L S P AIS P LPK NTT GC+SSQ H
Sbjct: 146 TTHKNLCSLFSNPRAISLI*ALENLPMLPKLSNTTL*LGCDSSQLRH 6
>gb|CO513961.1|CO513961 s13dSG71F0900075_156584 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 574
Score = 68.9 bits (144), Expect(2) = 4e-022
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1 / +3
Query: 367 PQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMVPWP 477
PQ+++L H +VGGF+THCGWNS ES+ GVPM+ WP
Sbjct: 450 PQEQVLNHPSVGGFLTHCGWNSTTESICAGVPMLCWP 560
Score = 50.6 bits (104), Expect(2) = 4e-022
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1 / +3
Query: 106 ECVRWLDSQPPSSVVFLCFGSGGCFTAPQAHEIAHGLDRSGHRFLWVLR 252
EC+ WL S+ P SVV++ FGS T + E A GL FLW++R
Sbjct: 216 ECLEWLGSKEPGSVVYVNFGSLTVMTEEKLLEFAWGLANCNKPFLWIIR 362
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 9,544,248
Number of Sequences: 7669
Number of extensions: 146283
Number of successful extensions: 1582
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 43
effective length of database: 918,801
effective search space used: 284828310
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)