TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478065.2.2
(688 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DQ122831.1| Medicago sativa clone C3 ribosomal protein L... 284 9e-078
gb|CO514103.1|CO514103 s13dSG75C1200086_156868 Glandular tr... 282 2e-077
gb|CO513365.1|CO513365 s13dSG38B0700057_129894 Glandular tr... 275 3e-075
gb|AW698393.1|AW698393 G240 glandular-haired subtracted cDN... 230 1e-061
gb|CO513652.1|CO513652 s13dSG17C0900066_140086 Glandular tr... 210 2e-055
gb|CO515624.1|CO515624 s13dSG47G0800068_418307 Glandular tr... 138 7e-034
>gb|DQ122831.1| Medicago sativa clone C3 ribosomal protein L32 mRNA, complete cds
Length = 558
Score = 284 bits (614), Expect = 9e-078
Identities = 121/139 (87%), Positives = 127/139 (91%)
Frame = +1 / +1
Query: 112 SGRLKMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPN 291
S R KMAVPLLT+KIVKKRVK+F RP R C+K SWRRPKGIDSRVRRKFKG TLMPN
Sbjct: 46 SSRDKMAVPLLTKKIVKKRVKRFIRPQSGRKICVKQSWRRPKGIDSRVRRKFKGVTLMPN 225
Query: 292 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQ 471
IGYGSDKKTRHYLPN FKKFVVHNV +LELLMMHNRTYCAEIAHNVST+KRKEIVERAAQ
Sbjct: 226 IGYGSDKKTRHYLPNGFKKFVVHNVQDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQ 405
Query: 472 LDIVVTNKLARLRSQEDE* 528
LD+VVTNKLARLRSQEDE*
Sbjct: 406 LDVVVTNKLARLRSQEDE* 462
Score = 148 bits (317), Expect(2) = 2e-042
Identities = 68/84 (80%), Positives = 71/84 (84%)
Frame = -3 / -2
Query: 488 VTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCTTNFLNLLGR*CLVFL 309
VTT S+ AARSTIS F VDTLCAISAQYVLLCII +S S TLCTTNFLN LG+* VFL
Sbjct: 422 VTTTSNCAARSTISFLFRVDTLCAISAQYVLLCIIKSSRSWTLCTTNFLNPLGK*WRVFL 243
Query: 308 SEPYPMLGIKVHPLNFRLTRESIP 237
SEPYPMLGIKV PLNF LTRESIP
Sbjct: 242 SEPYPMLGIKVTPLNFLLTRESIP 171
Score = 138 bits (295), Expect = 9e-034
Identities = 55/104 (52%), Positives = 80/104 (76%)
Frame = -2 / -1
Query: 525 LIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQLQLRNIVHDKL 346
L+FL A+ G+L+GD+N++L + +D L+ H+VC+ STVCPVVHH++LQ+ +IVHD+L
Sbjct: 459 LVFLTAQPGQLVGDNNIQLCCTFNDLLSFSG*HIVCNLSTVCPVVHHQKLQVLDIVHDEL 280
Query: 345 LKLVGKIVPGLLVRAISNVRHQGASLELPPDTGVDTLGPAPAWL 214
L+ + +IV GLLV A+SNVRHQ S E P++ ++TL PAPA L
Sbjct: 279 LESIRQIVAGLLV*AVSNVRHQSNSFEFSPNS*INTLWPAPALL 148
Score = 97.3 bits (206), Expect = 2e-021
Identities = 59/138 (42%), Positives = 76/138 (55%)
Frame = +3 / +3
Query: 123 EDGGAAVDSEDREEAGQAVQEAPPRPLQVPQAKLAQAQGYRLPCQAEVQGMHLDA*HWIW 302
+DG + ED EEA Q V +A + +AKLAQA+GY ++Q + DA*HWI
Sbjct: 57 QDGRSIAHQEDCEEACQEVHQATKWQENMCEAKLAQAKGY*FTS*EKIQRSYFDA*HWIR 236
Query: 303 L*QEDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRTQRVH*EAQGNRGASCSA*HC 482
L QED L + + EV RAQC G DAQQDILC*+ TQ V+ + +G+R + C
Sbjct: 237 LRQEDPPLFA*WIQEVRRAQCPGPGAFDDAQQDILC*DCTQCVNPKKKGDR*TCSTIGCC 416
Query: 483 GHQ*ACPSPQPGR*VNCF 536
HQ A Q R V F
Sbjct: 417 CHQQAGQVAQSRRRVIAF 470
Score = 39.1 bits (79), Expect(2) = 2e-042
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = -3 / -2
Query: 188 GLLNCLTRFFTIF*VNSGTAI 126
GL+N LTRFFTIF V++GTAI
Sbjct: 122 GLMNLLTRFFTIFLVSNGTAI 60
>gb|CO514103.1|CO514103 s13dSG75C1200086_156868 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 505
Score = 282 bits (611), Expect = 2e-077
Identities = 118/135 (87%), Positives = 126/135 (93%)
Frame = +1 / +2
Query: 127 MAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 306
MAVPLLT+KI+KKRVK+F RP DR C+K SWRRPKGIDSRVRRKFKG TLMPNIGYGS
Sbjct: 50 MAVPLLTKKIIKKRVKRFIRPQSDRKICVKQSWRRPKGIDSRVRRKFKGVTLMPNIGYGS 229
Query: 307 DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVV 486
DKKTRHYLPN FKKFVVHNV +LELLMMHNRTYCAEIAHNVST+KRKEIVERAAQLD+VV
Sbjct: 230 DKKTRHYLPNGFKKFVVHNVQDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVV 409
Query: 487 TNKLARLRSQEDE*T 531
TNKLARLRSQEDE*+
Sbjct: 410 TNKLARLRSQEDE*S 454
Score = 150 bits (323), Expect(2) = 4e-042
Identities = 69/84 (82%), Positives = 71/84 (84%)
Frame = -3 / -2
Query: 488 VTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCTTNFLNLLGR*CLVFL 309
VTT S+*AARSTIS FLVDTLCAISAQYVLLCII +S S TLCTTNFL LGR* VFL
Sbjct: 411 VTTTSN*AARSTISFLFLVDTLCAISAQYVLLCIIKSSKSWTLCTTNFLKPLGR*WRVFL 232
Query: 308 SEPYPMLGIKVHPLNFRLTRESIP 237
SEPYPM GIKV PLN RLTRESIP
Sbjct: 231 SEPYPMFGIKVTPLNLRLTRESIP 160
Score = 143 bits (307), Expect = 2e-035
Identities = 59/126 (46%), Positives = 85/126 (67%)
Frame = -2 / -1
Query: 573 PLKPHHSKTTASRNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPV 394
P+ + L+FL A+ G+L+G++N++LS + +D L+ H+VCD STVCPV
Sbjct: 496 PINSKSKNNLTLQKRSLVFLTAQPGELVGNNNIQLSCTFNDLLSFPG*HIVCDLSTVCPV 317
Query: 393 VHHKQLQLRNIVHDKLLKLVGKIVPGLLVRAISNVRHQGASLELPPDTGVDTLGPAPAWL 214
VHH++ Q+ +IVH+KLL+ + +IV GLLV AISNV HQ S EL P+TG++TL P PA L
Sbjct: 316 VHHQKFQILDIVHNKLLETIRQIVAGLLV*AISNVWHQSNSFELTPNTGINTLWPTPALL 137
Query: 213 EALVAV 196
+ V
Sbjct: 136 DTYFPV 119
Score = 112 bits (239), Expect = 5e-026
Identities = 66/137 (48%), Positives = 80/137 (58%)
Frame = +3 / +1
Query: 126 DGGAAVDSEDREEAGQAVQEAPPRPLQVPQAKLAQAQGYRLPCQAEVQGMHLDA*HWIWL 305
DG ++V+ ED +EA Q V +A + QAKLA A+GY PC A VQ + DA HWIWL
Sbjct: 49 DGCSSVN*EDYQEACQEVHQASK*QENMCQAKLA*AKGY*FPC*A*VQRSYFDAKHWIWL 228
Query: 306 *QEDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRTQRVH*EAQGNRGASCSA*HCG 485
QED LS+ EVC AQC G DAQQDILC*+RTQ V+ E +G+R S C
Sbjct: 229 RQEDPPLSA*WFQEVCCAQCPGFGTFDDAQQDILC*DRTQCVNQEKKGDR*TCSSIGCCC 408
Query: 486 HQ*ACPSPQPGR*VNCF 536
+Q A Q R V F
Sbjct: 409 YQQARQVAQSRRRVIVF 459
Score = 109 bits (232), Expect = 5e-025
Identities = 56/105 (53%), Positives = 62/105 (59%)
Frame = -1 / -3
Query: 535 KQFTHLPGCGDGQAYW*PQCQAEQLAPRFPCAS*WTRCVRFQHSMSCCAS*ATPAQKHCA 356
K T L C +A W* Q E R P S T CVR QHSMSCCAS P HCA
Sbjct: 458 KTITRLLDCATWRACW*QQHPIELHVQRSPFFSWLTHCVRSQHSMSCCASSKVPNPGHCA 279
Query: 355 RQTS*TCWEDSAWSSCQSHIQC*ASRCIP*TSA*HGSRYPWACAS 221
+QTS* DS SSC SHIQC AS+ + *T A*HG++YP A AS
Sbjct: 278 QQTS*NH*ADSGGSSCLSHIQCLASK*LL*TYA*HGNQYPLAYAS 144
Score = 35.0 bits (70), Expect(2) = 4e-042
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -3 / -2
Query: 188 GLLNCLTRFFTIF*VNSGTAI 126
GL+N LTRF IF VN GTAI
Sbjct: 111 GLMNLLTRFLIIFLVNRGTAI 49
>gb|CO513365.1|CO513365 s13dSG38B0700057_129894 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 489
Score = 275 bits (596), Expect = 3e-075
Identities = 118/139 (84%), Positives = 124/139 (89%)
Frame = +1 / +1
Query: 112 SGRLKMAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPN 291
S R KM PL T+KIVKKRVK+ RP DR C+K SWRRPKGIDSRVRRKFKG TLMPN
Sbjct: 40 SSRDKMTGPLPTKKIVKKRVKRVIRPQSDRKICVKQSWRRPKGIDSRVRRKFKGVTLMPN 219
Query: 292 IGYGSDKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQ 471
IGYGSDKKTRHYLPN FKKFVVHNV +LELLMMHNRTYCAEIAHNVST+KRKEIVERAAQ
Sbjct: 220 IGYGSDKKTRHYLPNGFKKFVVHNVQDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQ 399
Query: 472 LDIVVTNKLARLRSQEDE* 528
LD+VVTNKLARLRSQEDE*
Sbjct: 400 LDVVVTNKLARLRSQEDE* 456
Score = 150 bits (323), Expect(2) = 5e-041
Identities = 69/84 (82%), Positives = 72/84 (85%)
Frame = -3 / -2
Query: 488 VTTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCTTNFLNLLGR*CLVFL 309
VTT S+ AARSTIS FLVDTLCAISAQYVLLCII +S S TLCTTNFLN LG+* VFL
Sbjct: 416 VTTTSNCAARSTISFLFLVDTLCAISAQYVLLCIIKSSRSWTLCTTNFLNPLGK*WRVFL 237
Query: 308 SEPYPMLGIKVHPLNFRLTRESIP 237
SEPYPMLGIKV PLNF LTRESIP
Sbjct: 236 SEPYPMLGIKVTPLNFLLTRESIP 165
Score = 136 bits (292), Expect = 2e-033
Identities = 55/110 (50%), Positives = 80/110 (72%)
Frame = -2 / -1
Query: 525 LIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQLQLRNIVHDKL 346
L+FL A+ G+L+GD+N++L + +D L+ H+VC+ STVCPVVHH++ Q+ +IVHDKL
Sbjct: 453 LVFLTAQPGQLVGDNNIQLCRTFNDLLSFSG*HIVCNLSTVCPVVHHQKFQVLDIVHDKL 274
Query: 345 LKLVGKIVPGLLVRAISNVRHQGASLELPPDTGVDTLGPAPAWLEALVAV 196
L+ + +IV GLLV A+SNVRHQ S + P++ ++TL PAPA L V
Sbjct: 273 LESIRQIVAGLLV*AVSNVRHQSNSFKFSPNS*INTLWPAPALLHTYFPV 124
Score = 31.3 bits (62), Expect(2) = 5e-041
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -3 / -2
Query: 188 GLLNCLTRFFTIF*VNSGTAI 126
GL+ LTRFFTIF V +G I
Sbjct: 116 GLMTLLTRFFTIFLVGNGPVI 54
>gb|AW698393.1|AW698393 G240 glandular-haired subtracted cDNA library Medicago sativa cDNA,
mRNA sequence
Length = 405
Score = 230 bits (497), Expect = 1e-061
Identities = 94/115 (81%), Positives = 102/115 (88%)
Frame = +1 / +1
Query: 142 LTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTR 321
LT+KI+K RVK+F RP DR C+K SWRRPKGIDS VRRKFKG TLMPNIGYGSDKKTR
Sbjct: 61 LTKKIIKNRVKRFIRPQSDRKICVKQSWRRPKGIDSHVRRKFKGVTLMPNIGYGSDKKTR 240
Query: 322 HYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVV 486
HYLPN FKKFVVHNV +LELLMMHNRTYCAEIAHNVST++RKEIVERAA L +VV
Sbjct: 241 HYLPNGFKKFVVHNVQDLELLMMHNRTYCAEIAHNVSTRRRKEIVERAAHLGVVV 405
Score = 138 bits (295), Expect = 9e-034
Identities = 64/83 (77%), Positives = 65/83 (78%)
Frame = -3 / -2
Query: 485 TTMSS*AARSTISLRFLVDTLCAISAQYVLLCIISNSSSETLCTTNFLNLLGR*CLVFLS 306
TT *AARSTIS LVDTLCAISAQYVLLCII +S S TLCTTNFL GR* VFLS
Sbjct: 404 TTTPK*AARSTISFLLLVDTLCAISAQYVLLCIIKSSKSWTLCTTNFLKPFGR*WRVFLS 225
Query: 305 EPYPMLGIKVHPLNFRLTRESIP 237
EPYPM GIKV PLN RLT ESIP
Sbjct: 224 EPYPMFGIKVTPLNLRLTWESIP 156
Score = 120 bits (256), Expect = 2e-028
Identities = 50/97 (51%), Positives = 69/97 (71%)
Frame = -2 / -1
Query: 486 DHNVKLSSSLHDFLALLSGHVVCDFSTVCPVVHHKQLQLRNIVHDKLLKLVGKIVPGLLV 307
D+N ++S + +D L+ H+VCD STVCPVVHH++ Q+ +IVH+KLL+ + +IV GLLV
Sbjct: 405 DNNTQMSCTFNDLLSSPG*HIVCDLSTVCPVVHHQKFQILDIVHNKLLETIWQIVAGLLV 226
Query: 306 RAISNVRHQGASLELPPDTGVDTLGPAPAWLEALVAV 196
AISNV HQ S EL P+ G++TL P PA L+ V
Sbjct: 225 *AISNVWHQSNSFELTPNMGINTLWPTPALLDTYFPV 115
Score = 103 bits (220), Expect = 2e-023
Identities = 54/108 (50%), Positives = 68/108 (62%)
Frame = +3 / +3
Query: 132 GAAVDSEDREEAGQAVQEAPPRPLQVPQAKLAQAQGYRLPCQAEVQGMHLDA*HWIWL*Q 311
G ++ +D +E Q V +A + QAKLA A+GY PC A VQ + DA HWIWL Q
Sbjct: 51 GPLLN*KDYQEPCQEVHQASK*QENMCQAKLA*AKGY*FPC*A*VQRSYFDAKHWIWLRQ 230
Query: 312 EDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRTQRVH*EAQGNR 455
ED LS++ EVC AQC G DAQQDILC*+RTQ V+ E +G+R
Sbjct: 231 EDPPLSAKWFQEVCCAQCPGFGTFDDAQQDILC*DRTQCVNQEKKGDR 374
Score = 97.3 bits (206), Expect = 2e-021
Identities = 47/78 (60%), Positives = 52/78 (66%)
Frame = -1 / -3
Query: 454 RFPCAS*WTRCVRFQHSMSCCAS*ATPAQKHCARQTS*TCWEDSAWSSCQSHIQC*ASRC 275
R P S T CVR QHSMSCCAS P HCA+QTS* DS SSC SHIQC AS+
Sbjct: 373 RSPFFSWLTHCVRSQHSMSCCASSKVPNPGHCAQQTS*NHLADSGGSSCLSHIQCLASK* 194
Query: 274 IP*TSA*HGSRYPWACAS 221
+ *T A*HG++YP A AS
Sbjct: 193 LL*TYA*HGNQYPLAYAS 140
>gb|CO513652.1|CO513652 s13dSG17C0900066_140086 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 351
Score = 210 bits (453), Expect = 2e-055
Identities = 85/99 (85%), Positives = 90/99 (90%)
Frame = +1 / +1
Query: 127 MAVPLLTQKIVKKRVKQFKRPHLDRYKCLKPSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 306
MAVPLLT+KI+KKRVK+F RP DR C+K SWRRPKGIDSRVRRKFKG TLMPNIGYGS
Sbjct: 55 MAVPLLTKKIIKKRVKRFIRPQSDRKICVKQSWRRPKGIDSRVRRKFKGVTLMPNIGYGS 234
Query: 307 DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAH 423
DKKTRHYLPN FKKFVVHNV +LELLMMHNRTYCAEIAH
Sbjct: 235 DKKTRHYLPNGFKKFVVHNVQDLELLMMHNRTYCAEIAH 351
Score = 113 bits (242), Expect(2) = 3e-030
Identities = 50/62 (80%), Positives = 51/62 (82%)
Frame = -3 / -2
Query: 422 CAISAQYVLLCIISNSSSETLCTTNFLNLLGR*CLVFLSEPYPMLGIKVHPLNFRLTRES 243
CAISAQYVLLCII +S S TLCTTNFL LGR* VFLSEPYPM GI V PLN RLTRES
Sbjct: 350 CAISAQYVLLCIIKSSKSWTLCTTNFLKPLGR*WRVFLSEPYPMFGINVTPLNLRLTRES 171
Query: 242 IP 237
IP
Sbjct: 170 IP 165
Score = 103 bits (220), Expect = 2e-023
Identities = 43/76 (56%), Positives = 57/76 (75%)
Frame = -2 / -1
Query: 423 VCDFSTVCPVVHHKQLQLRNIVHDKLLKLVGKIVPGLLVRAISNVRHQGASLELPPDTGV 244
VCD STVCPV+HH++ Q+ +IVH+KLL+ + +I+ GLLV AISNV HQ S EL P+TG+
Sbjct: 351 VCDLSTVCPVMHHQKFQILDIVHNKLLETIRQIMAGLLV*AISNVWHQRNSFELTPNTGI 172
Query: 243 DTLGPAPAWLEALVAV 196
+TL P PA L+ V
Sbjct: 171 NTLWPTPALLDTYFPV 124
Score = 95.9 bits (203), Expect = 5e-021
Identities = 51/99 (51%), Positives = 63/99 (63%)
Frame = +3 / +3
Query: 126 DGGAAVDSEDREEAGQAVQEAPPRPLQVPQAKLAQAQGYRLPCQAEVQGMHLDA*HWIWL 305
DG ++++ ED +EA Q V +A + QAKLA A+GY PC A VQ ++DA HWIWL
Sbjct: 54 DGCSSLN*EDYQEACQEVHQASK*QENMCQAKLA*AKGY*FPC*A*VQRSYVDAKHWIWL 233
Query: 306 *QEDQALSSQQV*EVCRAQCF*AGVAYDAQQDILC*NRT 422
QED LS+ EVC AQC G DA QDILC*+RT
Sbjct: 234 RQEDPPLSA*WFQEVCCAQCPGFGTFDDA*QDILC*DRT 350
Score = 32.2 bits (64), Expect(2) = 3e-030
Identities = 14/21 (66%), Positives = 15/21 (71%)
Frame = -3 / -2
Query: 188 GLLNCLTRFFTIF*VNSGTAI 126
GL+N LTRF IF V GTAI
Sbjct: 116 GLMNLLTRFLIIFLVKRGTAI 54
>gb|CO515624.1|CO515624 s13dSG47G0800068_418307 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 349
Score = 138 bits (296), Expect = 7e-034
Identities = 59/64 (92%), Positives = 62/64 (96%)
Frame = +1 / +2
Query: 343 KKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLARLRSQED 522
KKFVVHNV +LELLMMHNRTYCAEIAHNVST+KRKEIVERAAQLD+VVTNKLARLRSQED
Sbjct: 5 KKFVVHNVQDLELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVVTNKLARLRSQED 184
Query: 523 E*TV 534
E* V
Sbjct: 185 E*LV 196
Score = 95.0 bits (201), Expect = 9e-021
Identities = 35/77 (45%), Positives = 53/77 (68%)
Frame = -2 / -1
Query: 573 PLKPHHSKTTASRNSLLIFLAAETGKLIGDHNVKLSSSLHDFLALLSGHVVCDFSTVCPV 394
P+ +N L+FL A+ G+L+GD+N++LS + +D L+ H+VCD STVCPV
Sbjct: 235 PINSKSKNNLTLQNQSLVFLTAQPGELVGDNNIQLSCTFNDLLSFPG*HIVCDLSTVCPV 56
Query: 393 VHHKQLQLRNIVHDKLL 343
VHH++ Q+ +IVH+KLL
Sbjct: 55 VHHQKFQILDIVHNKLL 5
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,307,386
Number of Sequences: 7669
Number of extensions: 66926
Number of successful extensions: 874
Number of sequences better than 1.0e-020: 6
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 172323420
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)