TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455878.2.1
(1327 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF000976.1|MSAF000976 Medicago sativa 7-O-methyltransfer... 68 4e-032
gb|U97125.1|MSU97125 Medicago sativa isoflavone-O-methytran... 68 6e-032
emb|AX050436.1| Sequence 1 from Patent WO0071736 68 6e-032
gb|AF000975.1|MSAF000975 Medicago sativa 7-O-methyltransfer... 68 7e-032
gb|AF023481.1|AF023481 Medicago sativa o-methytransferase (... 68 3e-025
>gb|AF000976.1|MSAF000976 Medicago sativa 7-O-methyltransferase (7-IOMT(9)) mRNA, complete
cds
Length = 1227
Score = 68.4 bits (143), Expect(4) = 4e-032
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +2 / +3
Query: 68 AELLQAQADLWRHSLYYLTSMALKCAVELHIPTAIHNLGGSATLPDLVAALSLPAAKLPF 247
+E+ +AQA L++H ++ SM+LK AV ++IP IHN G +L +LV+ L +P++K+
Sbjct: 54 SEIFKAQALLYKHIYAFIDSMSLKWAVGMNIPNIIHNHGKPISLSNLVSILQVPSSKIGN 233
Query: 248 LGRVMRLLVTSGVF 289
+ R+MR L +G F
Sbjct: 234 VRRLMRYLAHNGFF 275
Score = 57.0 bits (118), Expect(4) = 4e-032
Identities = 20/45 (44%), Positives = 35/45 (77%)
Frame = +2 / +3
Query: 785 AQAVMLKLVLHFWSDDDCVKILELCRKAIPSREEGGKVIIIEILL 919
A AV+LK +LH W+D DC++IL+ C++A+ + + GKV II++++
Sbjct: 762 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 896
Score = 48.3 bits (99), Expect(4) = 4e-032
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2 / +3
Query: 977 MVNTKGRQRGEDDWRHIFTKAGFSDYKVVKKIGARGVIEVYP* 1105
M G++R E++W+ +F +AGF YK+ G +IE+YP*
Sbjct: 954 MACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP* 1082
Score = 23.5 bits (45), Expect(4) = 4e-032
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 680 SAAAIVKAFPDIKCTVLNLPR 742
+A I + FP +KC V + P+
Sbjct: 627 TAKIICETFPKLKCIVFDRPQ 689
>gb|U97125.1|MSU97125 Medicago sativa isoflavone-O-methytransferase mRNA, complete cds
Length = 1231
Score = 68.0 bits (142), Expect(4) = 6e-032
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +2 / +1
Query: 68 AELLQAQADLWRHSLYYLTSMALKCAVELHIPTAIHNLGGSATLPDLVAALSLPAAKLPF 247
+E+ +AQA L++H ++ SM+LK AVE++IP I N G +L +LV+ L +P++K+
Sbjct: 55 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 234
Query: 248 LGRVMRLLVTSGVF 289
+ R+MR L +G F
Sbjct: 235 VRRLMRYLAHNGFF 276
Score = 57.0 bits (118), Expect(4) = 6e-032
Identities = 20/45 (44%), Positives = 35/45 (77%)
Frame = +2 / +1
Query: 785 AQAVMLKLVLHFWSDDDCVKILELCRKAIPSREEGGKVIIIEILL 919
A AV+LK +LH W+D DC++IL+ C++A+ + + GKV II++++
Sbjct: 763 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 897
Score = 48.3 bits (99), Expect(4) = 6e-032
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2 / +1
Query: 977 MVNTKGRQRGEDDWRHIFTKAGFSDYKVVKKIGARGVIEVYP* 1105
M G++R E++W+ +F +AGF YK+ G +IE+YP*
Sbjct: 955 MACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP* 1083
Score = 23.5 bits (45), Expect(4) = 6e-032
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2 / +1
Query: 680 SAAAIVKAFPDIKCTVLNLPR 742
+A I + FP +KC V + P+
Sbjct: 628 TAKIICETFPKLKCIVFDRPQ 690
>emb|AX050436.1| Sequence 1 from Patent WO0071736
Length = 1231
Score = 68.0 bits (142), Expect(4) = 6e-032
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +2 / +1
Query: 68 AELLQAQADLWRHSLYYLTSMALKCAVELHIPTAIHNLGGSATLPDLVAALSLPAAKLPF 247
+E+ +AQA L++H ++ SM+LK AVE++IP I N G +L +LV+ L +P++K+
Sbjct: 55 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 234
Query: 248 LGRVMRLLVTSGVF 289
+ R+MR L +G F
Sbjct: 235 VRRLMRYLAHNGFF 276
Score = 57.0 bits (118), Expect(4) = 6e-032
Identities = 20/45 (44%), Positives = 35/45 (77%)
Frame = +2 / +1
Query: 785 AQAVMLKLVLHFWSDDDCVKILELCRKAIPSREEGGKVIIIEILL 919
A AV+LK +LH W+D DC++IL+ C++A+ + + GKV II++++
Sbjct: 763 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 897
Score = 48.3 bits (99), Expect(4) = 6e-032
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2 / +1
Query: 977 MVNTKGRQRGEDDWRHIFTKAGFSDYKVVKKIGARGVIEVYP* 1105
M G++R E++W+ +F +AGF YK+ G +IE+YP*
Sbjct: 955 MACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP* 1083
Score = 23.5 bits (45), Expect(4) = 6e-032
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2 / +1
Query: 680 SAAAIVKAFPDIKCTVLNLPR 742
+A I + FP +KC V + P+
Sbjct: 628 TAKIICETFPKLKCIVFDRPQ 690
>gb|AF000975.1|MSAF000975 Medicago sativa 7-O-methyltransferase (7-IOMT(6)) mRNA, complete
cds
Length = 1284
Score = 68.0 bits (142), Expect(4) = 7e-032
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +2 / +3
Query: 68 AELLQAQADLWRHSLYYLTSMALKCAVELHIPTAIHNLGGSATLPDLVAALSLPAAKLPF 247
+E+ +AQA L++H ++ SM+LK AVE++IP I N G +L +LV+ L +P++K+
Sbjct: 60 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 239
Query: 248 LGRVMRLLVTSGVF 289
+ R+MR L +G F
Sbjct: 240 VRRLMRYLAHNGFF 281
Score = 57.0 bits (118), Expect(4) = 7e-032
Identities = 20/45 (44%), Positives = 35/45 (77%)
Frame = +2 / +3
Query: 785 AQAVMLKLVLHFWSDDDCVKILELCRKAIPSREEGGKVIIIEILL 919
A AV+LK +LH W+D DC++IL+ C++A+ + + GKV II++++
Sbjct: 768 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 902
Score = 48.3 bits (99), Expect(4) = 7e-032
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2 / +3
Query: 977 MVNTKGRQRGEDDWRHIFTKAGFSDYKVVKKIGARGVIEVYP* 1105
M G++R E++W+ +F +AGF YK+ G +IE+YP*
Sbjct: 960 MACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP* 1088
Score = 23.5 bits (45), Expect(4) = 7e-032
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2 / +3
Query: 680 SAAAIVKAFPDIKCTVLNLPR 742
+A I + FP +KC V + P+
Sbjct: 633 TAKIICETFPKLKCIVFDRPQ 695
>gb|AF023481.1|AF023481 Medicago sativa o-methytransferase (iomt2003) mRNA, complete cds
Length = 1194
Score = 68.0 bits (142), Expect(4) = 3e-025
Identities = 30/74 (40%), Positives = 50/74 (67%)
Frame = +2 / +1
Query: 68 AELLQAQADLWRHSLYYLTSMALKCAVELHIPTAIHNLGGSATLPDLVAALSLPAAKLPF 247
+E+ +AQA L++H ++ SM+LK AVE++IP I N G +L +LV+ L +P++K+
Sbjct: 58 SEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGN 237
Query: 248 LGRVMRLLVTSGVF 289
+ R+MR L +G F
Sbjct: 238 VRRLMRYLAHNGFF 279
Score = 48.3 bits (99), Expect(4) = 3e-025
Identities = 17/43 (39%), Positives = 27/43 (62%)
Frame = +2 / +1
Query: 977 MVNTKGRQRGEDDWRHIFTKAGFSDYKVVKKIGARGVIEVYP* 1105
M G++R E++W+ +F +AGF YK+ G +IE+YP*
Sbjct: 931 MACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP* 1059
Score = 33.6 bits (67), Expect(4) = 3e-025
Identities = 11/29 (37%), Positives = 23/29 (79%)
Frame = +2 / +1
Query: 833 DCVKILELCRKAIPSREEGGKVIIIEILL 919
DC++IL+ C++A+ + + GKV II++++
Sbjct: 787 DCLRILKKCKEAVTNDGKRGKVTIIDMVI 873
Score = 23.5 bits (45), Expect(4) = 3e-025
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2 / +1
Query: 680 SAAAIVKAFPDIKCTVLNLPR 742
+A I + FP +KC V + P+
Sbjct: 631 TAKIICETFPKLKCIVFDRPQ 693
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 8,964,596
Number of Sequences: 7669
Number of extensions: 112398
Number of successful extensions: 867
Number of sequences better than 1.0e-020: 5
length of database: 1,248,568
effective HSP length: 44
effective length of database: 911,132
effective search space used: 361719404
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)