TBLASTX 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.1
(755 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x va... 178 7e-049
>gb|AJ888496.1|AJ888496 AJ888496 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 470
Score = 178 bits (383), Expect(2) = 7e-049
Identities = 72/110 (65%), Positives = 83/110 (75%)
Frame = -2 / +1
Query: 637 GEVMAMDPDAVAKAFVEHYYRTFDTNRAALVGLYQETSMLTFEGQKFQGPSAIAGKLGSL 458
G V AMDP+A++KAFVEHYY TFDTNR L LYQ+ SMLTFEGQ+ G I KL SL
Sbjct: 31 GGVRAMDPNALSKAFVEHYYTTFDTNRPNLATLYQDGSMLTFEGQQIMGSQNIVAKLTSL 210
Query: 457 PFQACEHQIVTVDCQPSGPQGGMLVFVSGSIRTGPEEHPIKFSQAFHLLP 308
PFQ C H I TVDCQPSG GGMLVFVSG+++ E+H +KFSQ FHL+P
Sbjct: 211 PFQQCHHSITTVDCQPSGANGGMLVFVSGNLQLAGEQHALKFSQMFHLIP 360
Score = 104 bits (222), Expect(2) = 2e-026
Identities = 56/110 (50%), Positives = 62/110 (56%)
Frame = +3 / -1
Query: 309 GSKWNAWENLMGCSSGPVRMEPETKTSMPPWGPDGWQSTVTI*CSQAWKGRDPSLPAMAD 488
G KWN NL C S P TKTSMPP P+G QSTV + WKGR+ SL +
Sbjct: 359 GIKWNI*LNLRACCSPASWRLPLTKTSMPPLAPEG*QSTVVME*WHCWKGREVSLATIF* 180
Query: 489 GPWNFWPSKVSMEVSWYSPTSAARLVSNVR**CSTKAFATASGSIAITSP 638
P PSKVS+E SW RLVS V **CST AF A GSIA+T P
Sbjct: 179 DPIIC*PSKVSIEPSW*RVARLGRLVSKVV**CSTNAFDNAFGSIALTPP 30
Score = 30.4 bits (60), Expect(2) = 7e-049
Identities = 11/16 (68%), Positives = 14/16 (87%)
Frame = -2 / +1
Query: 301 GSFFVQNDMFRLNYG* 254
GS++V ND+FRLNY *
Sbjct: 370 GSYYVLNDIFRLNYA* 417
Score = 28.6 bits (56), Expect(2) = 2e-026
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1 / -2
Query: 211 KPLNNSFITRVSAVFSHSSGGTCHS 285
+P + R S F+HSS G CHS
Sbjct: 460 RPRYANLYIRQSIXFTHSSNGICHS 386
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
0.318 0.134 0.401
Matrix: BLOSUM62
Number of Hits to DB: 5,599,195
Number of Sequences: 7669
Number of extensions: 67870
Number of successful extensions: 767
Number of sequences better than 1.0e-020: 2
length of database: 1,248,568
effective HSP length: 42
effective length of database: 926,470
effective search space used: 193632230
frameshift window, decay const: 40, 0.5
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)